Wall clock time and date at job start Wed Apr 1 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21285 * 119.99532 * 2 1 4 4 N 1.34776 * 120.00347 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.62950 * 354.42067 * 4 2 1 6 6 C 1.53195 * 108.77224 * 233.58258 * 5 4 2 7 7 C 1.53042 * 109.31231 * 305.36293 * 6 5 4 8 8 C 1.53036 * 109.53726 * 61.36563 * 7 6 5 9 9 H 1.09000 * 109.52489 * 58.60222 * 8 7 6 10 10 C 1.50699 * 109.49787 * 178.68141 * 8 7 6 11 11 O 1.21287 * 119.99551 * 359.84029 * 10 8 7 12 12 N 1.34773 * 120.00185 * 179.83880 * 10 8 7 13 13 C 1.46505 * 119.99765 * 180.02562 * 12 10 8 14 14 H 1.08993 * 109.47407 * 34.99696 * 13 12 10 15 15 C 1.53008 * 109.46800 * 155.00033 * 13 12 10 16 16 C 1.50700 * 109.46786 * 294.99583 * 15 13 12 17 17 H 1.08000 * 120.00636 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99701 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00043 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99900 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47285 * 269.99922 * 20 18 16 22 22 H 1.48507 * 109.47243 * 150.00133 * 20 18 16 23 23 H 1.48499 * 109.47321 * 30.00073 * 20 18 16 24 24 C 1.50693 * 109.46998 * 274.99477 * 13 12 10 25 25 C 1.38237 * 120.00171 * 319.73157 * 24 13 12 26 26 C 1.38239 * 120.00111 * 179.78622 * 25 24 13 27 27 C 1.38236 * 119.99945 * 0.46057 * 26 25 24 28 28 C 1.38242 * 119.99927 * 359.77019 * 27 26 25 29 29 C 1.38234 * 119.99887 * 0.02562 * 28 27 26 30 30 C 1.46925 * 120.62997 * 174.38825 * 4 2 1 31 31 H 1.09002 * 109.47212 * 184.88046 * 1 2 3 32 32 H 1.09006 * 109.47411 * 304.87545 * 1 2 3 33 33 H 1.08997 * 109.47911 * 64.87832 * 1 2 3 34 34 H 1.09003 * 109.58829 * 353.36750 * 5 4 2 35 35 H 1.08995 * 109.59116 * 113.65363 * 5 4 2 36 36 H 1.08999 * 109.49953 * 65.31734 * 6 5 4 37 37 H 1.09005 * 109.49680 * 185.40738 * 6 5 4 38 38 H 1.08999 * 109.45760 * 301.34362 * 7 6 5 39 39 H 1.09002 * 109.45346 * 181.38821 * 7 6 5 40 40 H 0.96995 * 119.99981 * 359.97438 * 12 10 8 41 41 H 1.08993 * 109.46837 * 174.99910 * 15 13 12 42 42 H 1.08993 * 109.47114 * 54.99571 * 15 13 12 43 43 H 0.97000 * 120.00032 * 359.97438 * 19 18 16 44 44 H 1.07997 * 120.00001 * 359.97438 * 25 24 13 45 45 H 1.08000 * 120.00124 * 180.25533 * 26 25 24 46 46 H 1.07989 * 120.00349 * 179.78808 * 27 26 25 47 47 H 1.07991 * 120.00290 * 179.97438 * 28 27 26 48 48 H 1.08003 * 120.00334 * 179.97438 * 29 28 27 49 49 H 1.08995 * 109.58911 * 6.63229 * 30 4 2 50 50 H 1.09003 * 109.70578 * 246.27056 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4655 -2.4445 0.1240 6 6 2.0724 -3.2392 1.2846 7 6 3.5805 -3.3818 1.0665 8 6 4.2272 -1.9951 1.0403 9 1 4.0235 -1.4803 1.9792 10 6 5.7163 -2.1379 0.8578 11 8 6.2124 -3.2405 0.7614 12 7 6.4967 -1.0406 0.8018 13 6 7.9443 -1.1795 0.6239 14 1 8.1506 -2.0316 -0.0237 15 6 8.5041 0.0935 -0.0142 16 6 7.9444 0.2463 -1.4050 17 1 7.2576 -0.4905 -1.7948 18 6 8.3089 1.3269 -2.1799 19 7 9.1456 2.2239 -1.7055 20 14 7.6157 1.5160 -3.9041 21 1 8.5094 0.8344 -4.8745 22 1 7.5232 2.9584 -4.2451 23 1 6.2632 0.9057 -3.9636 24 6 8.5965 -1.3981 1.9646 25 6 8.1618 -0.6886 3.0686 26 6 8.7572 -0.8923 4.2995 27 6 9.7935 -1.7985 4.4245 28 6 10.2314 -2.5046 3.3195 29 6 9.6332 -2.3039 2.0896 30 6 3.6448 -1.1863 -0.1231 31 1 -0.3634 -1.0239 0.0874 32 1 -0.3634 0.5876 0.8431 33 1 -0.3635 0.4363 -0.9304 34 1 0.4108 -2.2549 0.3231 35 1 1.5666 -3.0109 -0.8017 36 1 1.8885 -2.7131 2.2213 37 1 1.6157 -4.2281 1.3266 38 1 3.7640 -3.8862 0.1178 39 1 4.0109 -3.9681 1.8784 40 1 6.0999 -0.1589 0.8785 41 1 9.5908 0.0266 -0.0652 42 1 8.2211 0.9566 0.5883 43 1 9.5058 2.1255 -0.8103 44 1 7.3551 0.0226 2.9700 45 1 8.4148 -0.3410 5.1628 46 1 10.2609 -1.9552 5.3853 47 1 11.0413 -3.2122 3.4170 48 1 9.9755 -2.8552 1.2262 49 1 4.0279 -0.1665 -0.0871 50 1 3.9278 -1.6499 -1.0682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153229578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:56 Heat of formation + Delta-G solvation = -82.661703 kcal Electronic energy + Delta-G solvation = -30921.793395 eV Core-core repulsion = 26912.099524 eV Total energy + Delta-G solvation = -4009.693871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.72054 -40.84189 -39.88868 -38.16641 -37.00050 -35.00789 -34.25803 -33.08028 -32.06795 -31.75145 -30.50647 -30.15242 -26.68763 -26.12918 -25.10587 -24.03596 -23.50978 -22.71629 -21.53243 -21.07184 -20.01593 -19.12355 -18.41476 -17.91222 -17.81517 -17.26333 -16.92125 -16.54169 -16.33993 -15.87104 -15.73894 -15.56698 -15.24079 -15.08431 -14.88222 -14.68340 -14.39393 -14.30762 -14.25006 -14.13062 -13.80853 -13.68718 -13.40049 -13.25260 -13.07281 -13.00563 -12.58584 -12.55192 -12.28415 -12.09776 -12.00960 -11.99427 -11.86132 -11.78850 -11.68358 -11.05299 -10.88959 -10.73870 -10.58097 -10.09252 -9.85927 -9.75513 -9.62753 -8.70288 -6.41168 0.40332 0.45610 1.46490 1.48020 1.55068 1.61371 1.72185 1.96436 2.24907 2.50135 2.86912 3.13575 3.49615 3.58266 3.72560 3.83416 3.87184 3.91697 3.98796 4.04651 4.11036 4.16056 4.22929 4.29732 4.39529 4.46965 4.49386 4.60437 4.63680 4.64517 4.66926 4.70724 4.78608 4.88500 4.94932 4.99022 5.05684 5.08512 5.10876 5.17402 5.20418 5.35580 5.41368 5.45387 5.51924 5.54640 5.76493 5.90369 6.07920 6.14519 6.39910 6.49066 6.57859 7.13209 7.19252 7.37675 8.70130 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007090 B = 0.004546 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3948.172498 B = 6157.370060 C = 8944.961130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.499 3.501 3 O -0.602 6.602 4 N -0.609 5.609 5 C 0.093 3.907 6 C -0.125 4.125 7 C -0.096 4.096 8 C -0.105 4.105 9 H 0.107 0.893 10 C 0.515 3.485 11 O -0.577 6.577 12 N -0.698 5.698 13 C 0.207 3.793 14 H 0.059 0.941 15 C 0.021 3.979 16 C -0.601 4.601 17 H 0.045 0.955 18 C -0.030 4.030 19 N -0.934 5.934 20 Si 1.111 2.889 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.276 1.276 24 C -0.100 4.100 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.132 4.132 30 C 0.124 3.876 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.403 0.597 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.257 0.743 44 H 0.114 0.886 45 H 0.147 0.853 46 H 0.155 0.845 47 H 0.147 0.853 48 H 0.113 0.887 49 H 0.072 0.928 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 -11.991 10.859 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.291 3.709 3 O -0.484 6.484 4 N -0.342 5.342 5 C -0.027 4.027 6 C -0.163 4.163 7 C -0.135 4.135 8 C -0.127 4.127 9 H 0.125 0.875 10 C 0.302 3.698 11 O -0.457 6.457 12 N -0.346 5.346 13 C 0.101 3.899 14 H 0.077 0.923 15 C -0.016 4.016 16 C -0.639 4.639 17 H 0.063 0.937 18 C -0.228 4.228 19 N -0.571 5.571 20 Si 0.933 3.067 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.139 4.139 29 C -0.151 4.151 30 C -0.001 4.001 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.238 0.762 41 H 0.019 0.981 42 H 0.021 0.979 43 H 0.067 0.933 44 H 0.132 0.868 45 H 0.165 0.835 46 H 0.172 0.828 47 H 0.165 0.835 48 H 0.131 0.869 49 H 0.090 0.910 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.854 -11.261 9.441 22.361 hybrid contribution 0.742 -0.187 1.014 1.271 sum -16.111 -11.448 10.455 22.359 Atomic orbital electron populations 1.22065 0.87326 1.06993 1.06160 1.21875 0.92728 0.82239 0.74102 1.90746 1.72106 1.33181 1.52322 1.48301 1.05885 1.07860 1.72155 1.22316 0.98220 0.82434 0.99746 1.21946 0.93166 1.02395 0.98762 1.21338 0.96368 0.92818 1.02932 1.21632 0.89378 1.00705 1.00997 0.87477 1.20989 0.89771 0.83790 0.75225 1.90632 1.76576 1.26788 1.51741 1.45980 1.07180 1.09320 1.72152 1.19562 0.79731 0.98667 0.91906 0.92294 1.19293 0.95010 0.91869 0.95420 1.22202 1.30070 1.10991 1.00630 0.93694 1.27143 0.95071 0.92442 1.08187 1.70882 1.30586 1.36755 1.18892 0.83000 0.75984 0.76560 0.71149 1.19809 1.20750 1.20078 1.20412 0.97163 0.97006 0.95559 1.21040 1.00652 0.99473 0.93071 1.21442 0.96706 0.98815 0.97106 1.21501 0.97010 0.96228 0.99604 1.21417 1.00196 1.00222 0.92025 1.21176 0.96742 0.98332 0.98832 1.21241 0.81497 1.00488 0.96846 0.86438 0.87860 0.87891 0.85130 0.90139 0.90691 0.87157 0.92028 0.91474 0.76215 0.98123 0.97858 0.93345 0.86784 0.83538 0.82761 0.83523 0.86924 0.90987 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.11 71.23 0.72 -1.24 16 2 C 0.50 12.10 7.79 87.65 0.68 12.78 16 3 O -0.60 -21.94 16.52 -3.05 -0.05 -21.99 16 4 N -0.61 -13.17 2.97 -818.92 -2.43 -15.60 16 5 C 0.09 1.09 6.31 86.36 0.54 1.63 16 6 C -0.12 -1.51 6.08 30.67 0.19 -1.32 16 7 C -0.10 -2.08 4.46 30.62 0.14 -1.94 16 8 C -0.11 -2.85 2.68 -11.46 -0.03 -2.88 16 9 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 10 C 0.52 18.86 7.11 87.66 0.62 19.48 16 11 O -0.58 -24.64 15.64 -3.05 -0.05 -24.68 16 12 N -0.70 -27.51 3.95 -446.09 -1.76 -29.27 16 13 C 0.21 9.19 2.11 44.24 0.09 9.28 16 14 H 0.06 2.91 7.44 -2.39 -0.02 2.89 16 15 C 0.02 1.12 3.80 29.85 0.11 1.23 16 16 C -0.60 -34.25 8.84 25.60 0.23 -34.02 16 17 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 18 C -0.03 -1.75 5.46 84.66 0.46 -1.29 16 19 N -0.93 -58.17 13.65 21.45 0.29 -57.88 16 20 Si 1.11 52.29 29.90 68.60 2.05 54.34 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.10 -3.94 4.91 -19.87 -0.10 -4.04 16 25 C -0.12 -4.30 9.32 22.27 0.21 -4.09 16 26 C -0.12 -3.44 10.05 22.27 0.22 -3.21 16 27 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 28 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 29 C -0.13 -4.78 9.67 22.27 0.22 -4.57 16 30 C 0.12 3.57 5.58 86.36 0.48 4.06 16 31 H 0.12 0.48 5.14 -2.39 -0.01 0.47 16 32 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.13 0.54 5.14 -2.39 -0.01 0.53 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 39 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 40 H 0.40 15.52 8.14 -92.71 -0.75 14.76 16 41 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 42 H 0.00 0.17 8.01 -2.39 -0.02 0.15 16 43 H 0.26 16.17 7.22 -92.71 -0.67 15.50 16 44 H 0.11 3.86 7.73 -2.91 -0.02 3.84 16 45 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 46 H 0.15 2.74 8.06 -2.92 -0.02 2.72 16 47 H 0.15 3.25 8.06 -2.92 -0.02 3.22 16 48 H 0.11 4.07 8.04 -2.91 -0.02 4.05 16 49 H 0.07 2.54 6.59 -2.39 -0.02 2.52 16 50 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -81.90 404.89 3.58 -78.33 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.29 Total: 33.13 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 5.24 Total: -16.37 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.90 Total: -102.75 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.10 Total: -46.68 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 2.05 Total: 54.34 kcal Total: -81.90 3.58 -78.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153229578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.335 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds