Wall clock time and date at job start Wed Apr 1 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21280 * 119.99912 * 2 1 4 4 N 1.34776 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.47229 * 121.33406 * 6.09079 * 4 2 1 6 6 C 1.52792 * 107.91332 * 115.75984 * 5 4 2 7 7 C 1.50591 * 110.85659 * 47.47678 * 6 5 4 8 8 C 1.38979 * 117.61961 * 160.50334 * 7 6 5 9 9 C 1.37912 * 120.58277 * 178.77675 * 8 7 6 10 10 C 1.38264 * 119.82453 * 0.03997 * 9 8 7 11 11 C 1.37952 * 119.71824 * 0.26919 * 10 9 8 12 12 C 1.37672 * 122.85832 * 339.80270 * 7 6 5 13 13 C 1.46687 * 121.33553 * 186.05895 * 4 2 1 14 14 H 1.09001 * 109.43181 * 104.37784 * 13 4 2 15 15 C 1.53003 * 109.40230 * 344.48329 * 13 4 2 16 16 C 1.50707 * 109.46989 * 77.30411 * 15 13 4 17 17 O 1.21275 * 119.99964 * 357.93147 * 16 15 13 18 18 N 1.34770 * 119.99820 * 177.92890 * 16 15 13 19 19 C 1.46499 * 120.00186 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47339 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.47042 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.46573 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00733 * 0.02562 * 22 21 20 24 24 C 1.37887 * 119.99571 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99888 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99847 * 359.97438 * 24 22 21 27 27 H 1.48509 * 109.46660 * 90.00319 * 26 24 22 28 28 H 1.48493 * 109.47130 * 210.00396 * 26 24 22 29 29 H 1.48502 * 109.47301 * 330.00373 * 26 24 22 30 30 H 1.08997 * 109.46710 * 185.50446 * 1 2 3 31 31 H 1.08999 * 109.46894 * 305.50739 * 1 2 3 32 32 H 1.08993 * 109.46903 * 65.50537 * 1 2 3 33 33 H 1.09003 * 109.77166 * 356.15994 * 5 4 2 34 34 H 1.08992 * 109.81998 * 235.38889 * 5 4 2 35 35 H 1.08994 * 109.20390 * 287.11625 * 6 5 4 36 36 H 1.09006 * 109.19515 * 167.82862 * 6 5 4 37 37 H 1.08003 * 119.70736 * 358.78986 * 8 7 6 38 38 H 1.07999 * 120.08272 * 180.02562 * 9 8 7 39 39 H 1.08003 * 120.13811 * 180.23874 * 10 9 8 40 40 H 1.08007 * 119.74858 * 179.90300 * 11 10 9 41 41 H 1.09000 * 109.47007 * 197.30079 * 15 13 4 42 42 H 1.08997 * 109.47042 * 317.30377 * 15 13 4 43 43 H 0.96999 * 120.00294 * 0.02562 * 18 16 15 44 44 H 1.08999 * 109.47150 * 300.00073 * 19 18 16 45 45 H 1.08994 * 109.47388 * 60.00126 * 19 18 16 46 46 H 1.08994 * 109.47250 * 299.99719 * 20 19 18 47 47 H 1.09004 * 109.47118 * 60.00178 * 20 19 18 48 48 H 1.08998 * 109.46732 * 299.99616 * 21 20 19 49 49 H 1.08994 * 109.46879 * 60.00134 * 21 20 19 50 50 H 0.97003 * 119.99766 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4808 -2.4555 -0.1323 6 6 1.9305 -3.1019 -1.4418 7 6 3.4298 -3.0572 -1.5746 8 6 4.0242 -3.9406 -2.4679 9 6 5.3903 -3.9348 -2.6563 10 6 6.1780 -3.0439 -1.9509 11 6 5.5915 -2.1703 -1.0588 12 6 4.2167 -2.1779 -0.8653 13 6 3.6414 -1.2048 0.1328 14 1 3.9061 -1.5210 1.1418 15 6 4.2116 0.1905 -0.1296 16 6 3.9958 1.0577 1.0839 17 8 3.4074 0.6160 2.0480 18 7 4.4567 2.3241 1.0977 19 6 4.2475 3.1669 2.2776 20 6 4.8627 4.5465 2.0344 21 6 4.6435 5.4270 3.2664 22 6 5.2490 6.7860 3.0266 23 1 5.7404 7.0005 2.0892 24 6 5.1754 7.7557 4.0041 25 7 5.7042 8.9416 3.7951 26 14 4.3247 7.3850 5.6253 27 1 5.3136 6.8397 6.5898 28 1 3.7362 8.6337 6.1724 29 1 3.2481 6.3867 5.4025 30 1 -0.3632 -1.0229 0.0986 31 1 -0.3633 0.5969 0.8366 32 1 -0.3633 0.4261 -0.9351 33 1 0.4038 -2.2894 -0.1540 34 1 1.7371 -3.1035 0.7057 35 1 1.4804 -2.5676 -2.2784 36 1 1.5997 -4.1404 -1.4609 37 1 3.4107 -4.6376 -3.0195 38 1 5.8436 -4.6245 -3.3528 39 1 7.2480 -3.0324 -2.0974 40 1 6.2065 -1.4752 -0.5064 41 1 5.2791 0.1138 -0.3361 42 1 3.7064 0.6340 -0.9876 43 1 4.9270 2.6775 0.3265 44 1 3.1787 3.2737 2.4629 45 1 4.7219 2.7047 3.1431 46 1 5.9314 4.4402 1.8489 47 1 4.3878 5.0087 1.1689 48 1 3.5747 5.5333 3.4515 49 1 5.1181 4.9650 4.1321 50 1 5.6521 9.6238 4.4826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:32 Heat of formation + Delta-G solvation = -34.353709 kcal Electronic energy + Delta-G solvation = -30306.455885 eV Core-core repulsion = 26298.856806 eV Total energy + Delta-G solvation = -4007.599079 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38892 -39.49268 -38.62551 -36.43236 -35.31869 -34.07489 -33.12600 -32.51433 -31.34614 -30.40963 -29.51123 -28.65292 -26.80851 -25.06091 -24.02834 -22.83157 -21.89319 -21.33968 -20.49275 -19.62572 -18.95649 -17.72803 -17.08102 -16.85958 -16.61738 -16.24956 -15.85577 -15.35714 -15.21048 -14.94959 -14.76746 -14.61640 -14.16426 -13.95765 -13.79670 -13.70844 -13.52504 -13.18401 -13.09241 -12.72750 -12.60097 -12.55660 -12.30245 -12.12737 -12.08648 -11.88569 -11.79229 -11.38556 -11.28297 -11.13136 -10.93742 -10.79225 -10.05090 -9.82788 -9.68577 -9.54913 -9.35774 -9.15440 -9.07939 -8.94704 -8.81313 -8.50625 -8.48601 -6.00581 -3.98409 0.95858 0.99294 2.39992 2.66727 3.31864 3.35686 3.37583 3.42640 3.48601 3.69124 4.13137 4.14971 4.41968 4.46956 4.50007 4.59811 4.70471 4.74298 4.79519 4.83542 5.00402 5.10633 5.12995 5.19881 5.20845 5.22551 5.31809 5.33739 5.42311 5.47967 5.62267 5.64825 5.70497 5.80148 5.84003 5.85596 6.03822 6.13455 6.15764 6.20039 6.36459 6.59499 6.61054 6.62687 6.88073 7.04737 7.18560 7.33299 7.46826 7.82159 8.02123 8.05808 8.57276 8.77627 9.03960 9.62133 11.12771 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002222 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.301975 B =12598.402358 C =13604.315279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.526 3.474 3 O -0.526 6.526 4 N -0.606 5.606 5 C 0.103 3.897 6 C -0.097 4.097 7 C -0.071 4.071 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.111 4.111 12 C -0.088 4.088 13 C 0.204 3.796 14 H 0.095 0.905 15 C -0.133 4.133 16 C 0.552 3.448 17 O -0.568 6.568 18 N -0.727 5.727 19 C 0.122 3.878 20 C -0.112 4.112 21 C -0.011 4.011 22 C -0.519 4.519 23 H 0.072 0.928 24 C 0.065 3.935 25 N -0.904 5.904 26 Si 0.880 3.120 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.264 1.264 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.395 0.605 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.018 0.982 49 H 0.013 0.987 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 -32.267 -15.470 36.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.316 3.684 3 O -0.404 6.404 4 N -0.339 5.339 5 C -0.019 4.019 6 C -0.135 4.135 7 C -0.071 4.071 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.137 4.137 11 C -0.129 4.129 12 C -0.089 4.089 13 C 0.100 3.900 14 H 0.113 0.887 15 C -0.173 4.173 16 C 0.341 3.659 17 O -0.448 6.448 18 N -0.377 5.377 19 C -0.001 4.001 20 C -0.150 4.150 21 C -0.049 4.049 22 C -0.557 4.557 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.544 5.544 26 Si 0.707 3.293 27 H -0.203 1.203 28 H -0.214 1.214 29 H -0.189 1.189 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.228 0.772 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.031 0.969 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.679 -31.806 -14.682 35.863 hybrid contribution -0.102 0.045 0.414 0.429 sum -7.782 -31.761 -14.267 35.678 Atomic orbital electron populations 1.22004 0.91843 1.04241 1.05395 1.20609 0.90420 0.82645 0.74697 1.90561 1.68719 1.31728 1.49380 1.47932 1.06492 1.06281 1.73230 1.21859 0.97989 0.84628 0.97471 1.20852 0.92049 1.01980 0.98616 1.19428 0.95162 0.95825 0.96725 1.21153 0.95101 0.99084 0.98509 1.21095 0.93866 0.99036 0.99699 1.21103 1.00024 0.95844 0.96699 1.21149 0.93895 0.99192 0.98699 1.19832 0.93844 0.97259 0.97971 1.19702 0.79272 0.93361 0.97632 0.88719 1.22109 1.01505 0.93727 0.99991 1.19696 0.76753 0.82156 0.87299 1.90606 1.42843 1.73823 1.37562 1.45901 1.59419 1.12997 1.19425 1.21474 1.00704 0.90901 0.87022 1.21683 0.99907 0.92475 1.00960 1.19502 0.96971 0.95321 0.93111 1.21126 1.36437 0.94988 1.03162 0.91027 1.25035 0.95065 0.94918 0.98559 1.69918 1.45717 1.04132 1.34595 0.86771 0.80587 0.77833 0.84098 1.20279 1.21411 1.18892 0.90237 0.88480 0.88851 0.88344 0.90472 0.90060 0.89459 0.86095 0.86016 0.85754 0.85518 0.90055 0.87146 0.77243 0.92312 0.92458 0.92351 0.92237 0.96391 0.96852 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 10.09 36.01 0.36 -1.03 16 2 C 0.53 6.33 6.94 -10.98 -0.08 6.26 16 3 O -0.53 -8.37 10.60 -16.92 -0.18 -8.54 16 4 N -0.61 -6.13 2.92 -166.77 -0.49 -6.62 16 5 C 0.10 0.64 6.34 -3.75 -0.02 0.61 16 6 C -0.10 -0.52 5.86 -28.04 -0.16 -0.69 16 7 C -0.07 -0.55 5.76 -104.61 -0.60 -1.16 16 8 C -0.12 -0.82 9.59 -39.43 -0.38 -1.20 16 9 C -0.12 -0.81 10.04 -39.69 -0.40 -1.20 16 10 C -0.12 -0.87 10.05 -39.68 -0.40 -1.27 16 11 C -0.11 -0.95 8.90 -39.46 -0.35 -1.30 16 12 C -0.09 -0.81 5.44 -104.56 -0.57 -1.38 16 13 C 0.20 2.26 2.54 -68.93 -0.18 2.08 16 14 H 0.10 1.20 7.49 -51.93 -0.39 0.81 16 15 C -0.13 -1.63 4.65 -27.88 -0.13 -1.76 16 16 C 0.55 9.02 4.95 -10.99 -0.05 8.97 16 17 O -0.57 -11.10 14.44 -16.91 -0.24 -11.34 16 18 N -0.73 -11.88 5.56 -60.30 -0.33 -12.21 16 19 C 0.12 2.31 5.67 -4.04 -0.02 2.29 16 20 C -0.11 -2.31 5.27 -26.73 -0.14 -2.45 16 21 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 22 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 23 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 24 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 25 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 26 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 30 H 0.08 0.39 5.26 -51.93 -0.27 0.12 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.38 5.19 -51.93 -0.27 0.11 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.29 8.11 -51.93 -0.42 -0.13 16 37 H 0.12 0.57 8.05 -52.48 -0.42 0.14 16 38 H 0.12 0.58 8.06 -52.49 -0.42 0.15 16 39 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.97 6.64 -52.48 -0.35 0.62 16 41 H 0.08 0.81 6.03 -51.93 -0.31 0.50 16 42 H 0.11 1.44 6.40 -51.93 -0.33 1.10 16 43 H 0.39 5.50 8.47 -40.82 -0.35 5.16 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 49 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 50 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -37.26 390.93 -10.61 -47.87 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.70 Total: 2.17 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.67 Total: -7.32 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.05 Total: -46.54 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.42 Total: -19.88 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.26 -10.61 -47.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.518 kcal (2) G-P(sol) polarization free energy of solvation -37.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds