Wall clock time and date at job start Wed Apr 1 2020 03:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21280 * 119.99912 * 2 1 4 4 N 1.34776 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.47229 * 121.33406 * 6.09079 * 4 2 1 6 6 C 1.52792 * 107.91332 * 115.75984 * 5 4 2 7 7 C 1.50591 * 110.85659 * 47.47678 * 6 5 4 8 8 C 1.38979 * 117.61961 * 160.50334 * 7 6 5 9 9 C 1.37912 * 120.58277 * 178.77675 * 8 7 6 10 10 C 1.38264 * 119.82453 * 0.03997 * 9 8 7 11 11 C 1.37952 * 119.71824 * 0.26919 * 10 9 8 12 12 C 1.37672 * 122.85832 * 339.80270 * 7 6 5 13 13 C 1.46687 * 121.33553 * 186.05895 * 4 2 1 14 14 H 1.09001 * 109.43181 * 104.37784 * 13 4 2 15 15 C 1.53003 * 109.40230 * 344.48329 * 13 4 2 16 16 C 1.50707 * 109.46989 * 77.30411 * 15 13 4 17 17 O 1.21275 * 119.99964 * 357.93147 * 16 15 13 18 18 N 1.34770 * 119.99820 * 177.92890 * 16 15 13 19 19 C 1.46499 * 120.00186 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47339 * 180.02562 * 19 18 16 21 21 C 1.53007 * 109.47042 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.46573 * 180.02562 * 21 20 19 23 23 H 1.07995 * 120.00733 * 0.02562 * 22 21 20 24 24 C 1.37887 * 119.99571 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99888 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99847 * 359.97438 * 24 22 21 27 27 H 1.48509 * 109.46660 * 90.00319 * 26 24 22 28 28 H 1.48493 * 109.47130 * 210.00396 * 26 24 22 29 29 H 1.48502 * 109.47301 * 330.00373 * 26 24 22 30 30 H 1.08997 * 109.46710 * 185.50446 * 1 2 3 31 31 H 1.08999 * 109.46894 * 305.50739 * 1 2 3 32 32 H 1.08993 * 109.46903 * 65.50537 * 1 2 3 33 33 H 1.09003 * 109.77166 * 356.15994 * 5 4 2 34 34 H 1.08992 * 109.81998 * 235.38889 * 5 4 2 35 35 H 1.08994 * 109.20390 * 287.11625 * 6 5 4 36 36 H 1.09006 * 109.19515 * 167.82862 * 6 5 4 37 37 H 1.08003 * 119.70736 * 358.78986 * 8 7 6 38 38 H 1.07999 * 120.08272 * 180.02562 * 9 8 7 39 39 H 1.08003 * 120.13811 * 180.23874 * 10 9 8 40 40 H 1.08007 * 119.74858 * 179.90300 * 11 10 9 41 41 H 1.09000 * 109.47007 * 197.30079 * 15 13 4 42 42 H 1.08997 * 109.47042 * 317.30377 * 15 13 4 43 43 H 0.96999 * 120.00294 * 0.02562 * 18 16 15 44 44 H 1.08999 * 109.47150 * 300.00073 * 19 18 16 45 45 H 1.08994 * 109.47388 * 60.00126 * 19 18 16 46 46 H 1.08994 * 109.47250 * 299.99719 * 20 19 18 47 47 H 1.09004 * 109.47118 * 60.00178 * 20 19 18 48 48 H 1.08998 * 109.46732 * 299.99616 * 21 20 19 49 49 H 1.08994 * 109.46879 * 60.00134 * 21 20 19 50 50 H 0.97003 * 119.99766 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4808 -2.4555 -0.1323 6 6 1.9305 -3.1019 -1.4418 7 6 3.4298 -3.0572 -1.5746 8 6 4.0242 -3.9406 -2.4679 9 6 5.3903 -3.9348 -2.6563 10 6 6.1780 -3.0439 -1.9509 11 6 5.5915 -2.1703 -1.0588 12 6 4.2167 -2.1779 -0.8653 13 6 3.6414 -1.2048 0.1328 14 1 3.9061 -1.5210 1.1418 15 6 4.2116 0.1905 -0.1296 16 6 3.9958 1.0577 1.0839 17 8 3.4074 0.6160 2.0480 18 7 4.4567 2.3241 1.0977 19 6 4.2475 3.1669 2.2776 20 6 4.8627 4.5465 2.0344 21 6 4.6435 5.4270 3.2664 22 6 5.2490 6.7860 3.0266 23 1 5.7404 7.0005 2.0892 24 6 5.1754 7.7557 4.0041 25 7 5.7042 8.9416 3.7951 26 14 4.3247 7.3850 5.6253 27 1 5.3136 6.8397 6.5898 28 1 3.7362 8.6337 6.1724 29 1 3.2481 6.3867 5.4025 30 1 -0.3632 -1.0229 0.0986 31 1 -0.3633 0.5969 0.8366 32 1 -0.3633 0.4261 -0.9351 33 1 0.4038 -2.2894 -0.1540 34 1 1.7371 -3.1035 0.7057 35 1 1.4804 -2.5676 -2.2784 36 1 1.5997 -4.1404 -1.4609 37 1 3.4107 -4.6376 -3.0195 38 1 5.8436 -4.6245 -3.3528 39 1 7.2480 -3.0324 -2.0974 40 1 6.2065 -1.4752 -0.5064 41 1 5.2791 0.1138 -0.3361 42 1 3.7064 0.6340 -0.9876 43 1 4.9270 2.6775 0.3265 44 1 3.1787 3.2737 2.4629 45 1 4.7219 2.7047 3.1431 46 1 5.9314 4.4402 1.8489 47 1 4.3878 5.0087 1.1689 48 1 3.5747 5.5333 3.4515 49 1 5.1181 4.9650 4.1321 50 1 5.6521 9.6238 4.4826 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171505108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:31 Heat of formation + Delta-G solvation = -57.812261 kcal Electronic energy + Delta-G solvation = -30307.473124 eV Core-core repulsion = 26298.856806 eV Total energy + Delta-G solvation = -4008.616318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20387 -40.32545 -39.73002 -37.16016 -36.93461 -35.09362 -34.84837 -33.31470 -33.09806 -31.07997 -30.16411 -29.71907 -28.37095 -25.89832 -24.80890 -24.24101 -22.75894 -22.22637 -21.98973 -20.98152 -19.72955 -18.99709 -18.54358 -17.91444 -17.62197 -16.93006 -16.86458 -16.60914 -16.48909 -16.14844 -15.74246 -15.58426 -15.34350 -15.10229 -14.80369 -14.75926 -14.48555 -14.15147 -13.92413 -13.83780 -13.75536 -13.62614 -13.56936 -13.28486 -12.94415 -12.80975 -12.73687 -12.66360 -12.57110 -12.29349 -11.94960 -11.85448 -11.77135 -11.66141 -11.62054 -11.36175 -10.80489 -10.78421 -10.30716 -9.95046 -9.79462 -9.56820 -9.50453 -8.31628 -6.35563 0.38923 0.45999 1.34164 1.35830 1.47209 1.48595 1.96077 2.15067 2.34435 2.40154 2.81820 3.03404 3.43896 3.63325 3.75843 3.87746 3.95726 4.05754 4.10531 4.14834 4.18048 4.24020 4.30057 4.33254 4.41008 4.41560 4.48452 4.58926 4.65837 4.68922 4.71733 4.77260 4.86645 4.88817 4.92953 5.00315 5.01617 5.10104 5.10332 5.22652 5.39598 5.40405 5.52079 5.58531 5.59763 5.62972 5.64991 5.70313 6.09476 6.25330 6.43871 6.70527 6.75015 7.19501 7.28878 7.49058 8.84845 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002222 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.301975 B =12598.402358 C =13604.315279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.510 3.490 3 O -0.575 6.575 4 N -0.605 5.605 5 C 0.096 3.904 6 C -0.093 4.093 7 C -0.079 4.079 8 C -0.123 4.123 9 C -0.121 4.121 10 C -0.128 4.128 11 C -0.126 4.126 12 C -0.106 4.106 13 C 0.206 3.794 14 H 0.071 0.929 15 C -0.120 4.120 16 C 0.550 3.450 17 O -0.603 6.603 18 N -0.725 5.725 19 C 0.138 3.862 20 C -0.098 4.098 21 C -0.010 4.010 22 C -0.531 4.531 23 H 0.037 0.963 24 C 0.005 3.995 25 N -0.949 5.949 26 Si 0.949 3.051 27 H -0.265 1.265 28 H -0.281 1.281 29 H -0.252 1.252 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.406 0.594 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.017 0.983 49 H 0.020 0.980 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 -35.473 -16.247 40.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.301 3.699 3 O -0.457 6.457 4 N -0.337 5.337 5 C -0.025 4.025 6 C -0.130 4.130 7 C -0.080 4.080 8 C -0.141 4.141 9 C -0.139 4.139 10 C -0.146 4.146 11 C -0.145 4.145 12 C -0.107 4.107 13 C 0.102 3.898 14 H 0.089 0.911 15 C -0.160 4.160 16 C 0.341 3.659 17 O -0.486 6.486 18 N -0.376 5.376 19 C 0.014 3.986 20 C -0.136 4.136 21 C -0.048 4.048 22 C -0.569 4.569 23 H 0.055 0.945 24 C -0.192 4.192 25 N -0.589 5.589 26 Si 0.772 3.228 27 H -0.190 1.190 28 H -0.206 1.206 29 H -0.176 1.176 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.241 0.759 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.035 0.965 49 H 0.038 0.962 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.029 -35.066 -15.495 39.386 hybrid contribution 0.370 1.003 0.560 1.207 sum -8.659 -34.063 -14.935 38.188 Atomic orbital electron populations 1.22012 0.88817 1.06329 1.05591 1.21410 0.92095 0.82416 0.73941 1.90510 1.69907 1.33478 1.51801 1.48094 1.06303 1.07355 1.71946 1.22183 0.99225 0.82834 0.98241 1.20904 0.90435 1.03647 0.98035 1.19763 0.96501 0.95333 0.96364 1.21474 0.95473 0.99024 0.98144 1.21452 0.94117 0.98841 0.99497 1.21347 1.01035 0.95726 0.96456 1.21268 0.93895 0.99896 0.99395 1.19738 0.94337 0.97934 0.98715 1.19523 0.80267 0.92864 0.97160 0.91144 1.21994 1.02804 0.93712 0.97473 1.20345 0.75584 0.82049 0.87888 1.90570 1.44314 1.74527 1.39169 1.45820 1.59699 1.13037 1.19087 1.21092 0.99241 0.90298 0.88015 1.21462 1.00481 0.92637 0.99002 1.19449 0.96360 0.93777 0.95200 1.21437 1.36290 0.97269 1.01953 0.94494 1.25991 0.95850 0.94602 1.02767 1.70056 1.47296 1.05345 1.36215 0.85679 0.79846 0.78179 0.79099 1.18991 1.20633 1.17594 0.86888 0.89667 0.87471 0.85655 0.90327 0.89375 0.86609 0.83575 0.83821 0.84292 0.85660 0.88142 0.87715 0.75878 0.94054 0.92868 0.91657 0.92411 0.96492 0.96163 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.09 71.24 0.72 -1.71 16 2 C 0.51 12.12 6.94 87.66 0.61 12.73 16 3 O -0.58 -18.74 10.60 18.46 0.20 -18.54 16 4 N -0.60 -11.81 2.92 -799.92 -2.34 -14.14 16 5 C 0.10 0.96 6.34 86.17 0.55 1.51 16 6 C -0.09 -0.71 5.86 29.74 0.17 -0.53 16 7 C -0.08 -1.06 5.76 -19.85 -0.11 -1.18 16 8 C -0.12 -1.31 9.59 22.37 0.21 -1.10 16 9 C -0.12 -1.33 10.04 22.20 0.22 -1.11 16 10 C -0.13 -1.69 10.05 22.21 0.22 -1.47 16 11 C -0.13 -2.08 8.90 22.35 0.20 -1.88 16 12 C -0.11 -1.89 5.44 -19.82 -0.11 -2.00 16 13 C 0.21 4.60 2.54 44.24 0.11 4.71 16 14 H 0.07 1.88 7.49 -2.39 -0.02 1.86 16 15 C -0.12 -3.00 4.65 29.85 0.14 -2.86 16 16 C 0.55 18.44 4.95 87.66 0.43 18.87 16 17 O -0.60 -24.29 14.44 18.48 0.27 -24.02 16 18 N -0.73 -24.06 5.56 -463.08 -2.57 -26.63 16 19 C 0.14 5.27 5.67 86.38 0.49 5.76 16 20 C -0.10 -4.05 5.27 30.60 0.16 -3.89 16 21 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 22 C -0.53 -31.77 9.66 25.60 0.25 -31.53 16 23 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 24 C 0.00 0.29 5.47 84.66 0.46 0.76 16 25 N -0.95 -60.86 13.96 21.45 0.30 -60.57 16 26 Si 0.95 46.24 27.47 68.60 1.88 48.12 16 27 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 30 H 0.11 0.76 5.26 -2.39 -0.01 0.75 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.13 0.51 5.19 -2.39 -0.01 0.50 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.26 8.11 -2.38 -0.02 0.24 16 37 H 0.15 0.77 8.05 -2.91 -0.02 0.74 16 38 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.13 1.95 6.64 -2.91 -0.02 1.93 16 41 H 0.10 2.03 6.03 -2.39 -0.01 2.01 16 42 H 0.10 2.79 6.40 -2.39 -0.02 2.77 16 43 H 0.41 11.42 8.47 -92.71 -0.79 10.63 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 48 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 49 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 50 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -83.40 390.93 2.70 -80.69 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.11 Total: 20.37 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.85 Total: -5.28 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -4.61 Total: -101.34 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: 0.46 Total: -42.57 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.88 Total: 48.12 kcal Total: -83.40 2.70 -80.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.882 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds