Wall clock time and date at job start Wed Apr 1 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34769 * 119.99783 * 2 1 4 4 O 1.21725 * 119.99971 * 180.02562 * 3 2 1 5 5 C 1.46256 * 120.00222 * 0.02562 * 3 2 1 6 6 C 1.35027 * 120.00111 * 186.98098 * 5 3 2 7 7 C 1.46963 * 119.99853 * 10.71771 * 6 5 3 8 8 C 1.40022 * 120.09759 * 226.47013 * 7 6 5 9 9 C 1.37604 * 119.89659 * 179.97438 * 8 7 6 10 10 C 1.39176 * 120.09864 * 359.97438 * 9 8 7 11 11 O 1.35572 * 119.89890 * 179.97438 * 10 9 8 12 12 C 1.34787 * 116.99859 * 5.77054 * 11 10 9 13 13 H 1.08004 * 119.99909 * 354.93062 * 12 11 10 14 14 C 1.38717 * 119.99873 * 174.65305 * 12 11 10 15 15 N 1.31505 * 120.00133 * 0.27804 * 14 12 11 16 16 Si 1.86805 * 119.99741 * 180.27336 * 14 12 11 17 17 H 1.48502 * 109.47276 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46572 * 120.00137 * 16 14 12 19 19 H 1.48491 * 109.47260 * 240.00158 * 16 14 12 20 20 C 1.39173 * 120.20183 * 0.25533 * 10 9 8 21 21 C 1.37593 * 120.10669 * 359.48714 * 20 10 9 22 22 C 1.46497 * 119.99922 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.50260 * 180.02562 * 22 2 1 24 24 C 1.53123 * 109.50290 * 59.99892 * 22 2 1 25 25 C 1.53116 * 109.16062 * 182.40274 * 24 22 2 26 26 C 1.53046 * 109.27653 * 57.65519 * 25 24 22 27 27 N 1.46847 * 109.52238 * 300.81811 * 26 25 24 28 28 C 1.46895 * 110.99881 * 185.84038 * 27 26 25 29 29 C 1.46847 * 111.19463 * 61.74551 * 27 26 25 30 30 H 1.09004 * 109.47674 * 89.99890 * 1 2 3 31 31 H 1.09005 * 109.47228 * 209.99531 * 1 2 3 32 32 H 1.08997 * 109.47466 * 329.99847 * 1 2 3 33 33 H 1.07999 * 120.00367 * 6.97965 * 5 3 2 34 34 H 1.07999 * 119.99940 * 190.71798 * 6 5 3 35 35 H 1.08004 * 120.05464 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.94982 * 180.02562 * 9 8 7 37 37 H 0.97000 * 119.99949 * 180.02562 * 15 14 12 38 38 H 1.08006 * 119.94561 * 179.74309 * 20 10 9 39 39 H 1.08000 * 120.05726 * 180.28064 * 21 20 10 40 40 H 1.09000 * 109.52298 * 302.30926 * 24 22 2 41 41 H 1.09001 * 109.52470 * 62.43521 * 24 22 2 42 42 H 1.09000 * 109.50547 * 177.59320 * 25 24 22 43 43 H 1.08998 * 109.50831 * 297.67817 * 25 24 22 44 44 H 1.08989 * 109.46274 * 60.83794 * 26 25 24 45 45 H 1.09004 * 109.45882 * 180.81825 * 26 25 24 46 46 H 1.09004 * 109.47693 * 63.95498 * 28 27 26 47 47 H 1.09001 * 109.47464 * 183.95991 * 28 27 26 48 48 H 1.09003 * 109.47150 * 303.95767 * 28 27 26 49 49 H 1.09002 * 109.45944 * 178.24410 * 29 27 26 50 50 H 1.08998 * 109.46541 * 58.27183 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3560 1.1672 -0.0005 5 6 1.4075 2.4338 0.0006 6 6 2.0751 3.5989 -0.1416 7 6 3.4923 3.5910 -0.5304 8 6 4.4133 4.3913 0.1564 9 6 5.7394 4.3804 -0.2108 10 6 6.1657 3.5749 -1.2627 11 8 7.4731 3.5676 -1.6214 12 6 8.3243 4.2681 -0.8458 13 1 7.9443 4.8680 -0.0321 14 6 9.6889 4.2139 -1.0892 15 7 10.1516 3.4835 -2.0800 16 14 10.8692 5.1786 -0.0095 17 1 10.1024 5.9144 1.0278 18 1 11.8170 4.2426 0.6470 19 1 11.6265 6.1452 -0.8445 20 6 5.2530 2.7814 -1.9513 21 6 3.9259 2.7819 -1.5877 22 6 2.1975 -1.2687 -0.0006 23 1 3.2693 -1.0701 0.0000 24 6 1.8280 -2.0717 -1.2509 25 6 2.5513 -3.4208 -1.2136 26 6 2.1681 -4.1642 0.0681 27 7 2.5426 -3.3555 1.2351 28 6 2.3165 -4.0962 2.4833 29 6 1.8245 -2.0746 1.2459 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 0.3336 2.4373 0.1146 34 1 1.5675 4.5365 0.0305 35 1 4.0835 5.0164 0.9732 36 1 6.4506 4.9970 0.3186 37 1 11.1058 3.4453 -2.2500 38 1 5.5876 2.1611 -2.7696 39 1 3.2191 2.1623 -2.1197 40 1 0.7508 -2.2364 -1.2729 41 1 2.1304 -1.5198 -2.1409 42 1 2.2591 -4.0144 -2.0798 43 1 3.6287 -3.2568 -1.2315 44 1 1.0926 -4.3402 0.0781 45 1 2.6927 -5.1190 0.1047 46 1 2.9699 -4.9682 2.5119 47 1 2.5352 -3.4504 3.3338 48 1 1.2767 -4.4197 2.5307 49 1 2.0995 -1.5116 2.1379 50 1 0.7505 -2.2603 1.2504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255057554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:34 Heat of formation + Delta-G solvation = 4.990264 kcal Electronic energy + Delta-G solvation = -30185.268443 eV Core-core repulsion = 26179.375446 eV Total energy + Delta-G solvation = -4005.892996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.30858 -39.06109 -38.43860 -36.55218 -35.34656 -33.33678 -32.92790 -32.09143 -30.37019 -30.07367 -27.93520 -27.05989 -26.83819 -25.42113 -24.02119 -23.10624 -22.15774 -21.68818 -20.62417 -19.61895 -18.43216 -17.85059 -17.28945 -16.81434 -16.38643 -15.61985 -15.51135 -14.99240 -14.76361 -14.53061 -14.45350 -14.13079 -13.90668 -13.84864 -13.50708 -13.41582 -13.27700 -13.11215 -12.86087 -12.76078 -12.58956 -12.46720 -12.36451 -12.09084 -11.95325 -11.66269 -11.54942 -11.28252 -11.09407 -10.95376 -10.75507 -10.72942 -10.61093 -10.56059 -10.36829 -9.43233 -9.34440 -9.11645 -8.70354 -8.66478 -8.50160 -7.89150 -6.83280 -6.41802 -3.97539 1.29308 2.45826 2.70737 2.97554 3.16132 3.17852 3.22849 3.61647 3.78755 4.00619 4.55925 4.59287 4.71651 4.72753 4.81293 4.89053 5.01215 5.06358 5.11600 5.14275 5.17117 5.23528 5.29810 5.32317 5.39467 5.40774 5.43705 5.51990 5.59959 5.62016 5.63371 5.73673 5.77348 5.88671 5.92845 6.04261 6.15905 6.28726 6.34519 6.43885 6.55336 6.63488 6.78343 6.82021 6.87037 7.07560 7.16524 7.39668 7.47630 7.54509 7.56578 7.96305 8.05091 8.53942 9.04120 9.76490 10.76280 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.002634 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.254379 B =10626.599005 C =11929.551845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.618 5.618 3 C 0.542 3.458 4 O -0.506 6.506 5 C -0.265 4.265 6 C 0.027 3.973 7 C -0.186 4.186 8 C -0.043 4.043 9 C -0.248 4.248 10 C 0.171 3.829 11 O -0.174 6.174 12 C -0.389 4.389 13 H 0.094 0.906 14 C 0.039 3.961 15 N -0.860 5.860 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.200 4.200 21 C 0.007 3.993 22 C 0.144 3.856 23 H 0.113 0.887 24 C -0.127 4.127 25 C -0.116 4.116 26 C 0.055 3.945 27 N -0.540 5.540 28 C 0.028 3.972 29 C 0.051 3.949 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.270 0.730 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.023 0.977 49 H 0.077 0.923 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 -10.929 5.440 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.353 5.353 3 C 0.333 3.667 4 O -0.381 6.381 5 C -0.286 4.286 6 C 0.007 3.993 7 C -0.186 4.186 8 C -0.061 4.061 9 C -0.268 4.268 10 C 0.116 3.884 11 O -0.076 6.076 12 C -0.465 4.465 13 H 0.111 0.889 14 C -0.166 4.166 15 N -0.495 5.495 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.219 4.219 21 C -0.012 4.012 22 C 0.040 3.960 23 H 0.131 0.869 24 C -0.165 4.165 25 C -0.155 4.155 26 C -0.072 4.072 27 N -0.265 5.265 28 C -0.121 4.121 29 C -0.077 4.077 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.095 0.905 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.835 -10.987 5.120 24.104 hybrid contribution -0.599 0.160 0.769 0.988 sum -21.434 -10.827 5.889 24.725 Atomic orbital electron populations 1.21729 0.80538 1.02623 1.01481 1.47814 1.06333 1.05711 1.75484 1.18522 0.87692 0.83933 0.76540 1.91001 1.12956 1.86419 1.47721 1.22728 0.99379 0.92434 1.14096 1.22365 0.93390 0.96497 0.87044 1.18289 0.92229 1.05572 1.02556 1.20717 0.92664 0.95833 0.96907 1.20953 0.96239 1.06543 1.03025 1.19513 0.85509 0.91879 0.91496 1.83909 1.12304 1.63116 1.48304 1.21437 0.86723 1.25747 1.12603 0.88879 1.25318 0.96573 0.97392 0.97300 1.70032 1.14443 1.37147 1.27867 0.85640 0.79731 0.78867 0.79160 1.19049 1.20118 1.20150 1.20000 0.92311 1.04846 1.04769 1.20411 0.94019 0.92685 0.94057 1.20944 0.99453 0.82407 0.93225 0.86902 1.21915 1.00039 0.96130 0.98454 1.21564 1.01971 0.95484 0.96458 1.22133 0.98115 0.96577 0.90416 1.61781 1.57905 1.04170 1.02656 1.22346 0.99187 0.98758 0.91779 1.22394 0.95506 0.90566 0.99274 0.92953 0.91803 0.90818 0.85947 0.86089 0.87671 0.85675 0.92048 0.86858 0.88190 0.92270 0.91127 0.91088 0.90424 0.95076 0.90570 0.91132 0.91283 0.95837 0.90471 0.94899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 9.21 59.85 0.55 1.18 16 2 N -0.62 -7.38 2.76 -175.54 -0.49 -7.87 16 3 C 0.54 8.28 6.74 -13.04 -0.09 8.20 16 4 O -0.51 -10.13 11.65 5.17 0.06 -10.07 16 5 C -0.27 -3.42 9.15 -37.50 -0.34 -3.76 16 6 C 0.03 0.38 9.79 -37.19 -0.36 0.01 16 7 C -0.19 -3.48 4.43 -105.03 -0.47 -3.94 16 8 C -0.04 -0.85 9.78 -39.14 -0.38 -1.23 16 9 C -0.25 -5.77 9.14 -39.46 -0.36 -6.13 16 10 C 0.17 4.41 6.66 -38.89 -0.26 4.15 16 11 O -0.17 -5.18 9.74 0.72 0.01 -5.18 16 12 C -0.39 -11.24 9.48 30.91 0.29 -10.95 16 13 H 0.09 2.50 5.18 -52.48 -0.27 2.23 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 16 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 C -0.20 -4.67 9.97 -39.47 -0.39 -5.06 16 21 C 0.01 0.14 6.67 -39.15 -0.26 -0.12 16 22 C 0.14 1.74 2.69 -67.85 -0.18 1.56 16 23 H 0.11 1.81 6.90 -51.93 -0.36 1.45 16 24 C -0.13 -1.28 5.32 -26.61 -0.14 -1.42 16 25 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 26 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 27 N -0.54 -5.60 4.91 -242.96 -1.19 -6.79 16 28 C 0.03 0.23 9.62 60.06 0.58 0.80 16 29 C 0.05 0.54 4.74 -3.83 -0.02 0.53 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 32 H 0.07 0.50 6.02 -51.93 -0.31 0.18 16 33 H 0.12 1.13 6.14 -52.49 -0.32 0.81 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 36 H 0.13 2.88 5.62 -52.49 -0.29 2.59 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 2.58 8.06 -52.48 -0.42 2.16 16 39 H 0.10 1.86 7.27 -52.49 -0.38 1.48 16 40 H 0.06 0.51 7.60 -51.93 -0.39 0.12 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.25 8.14 -51.94 -0.42 -0.17 16 45 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 48 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 50 H 0.03 0.30 6.62 -51.93 -0.34 -0.04 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -34.16 395.47 -9.66 -43.83 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.63 Total: 5.12 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.12 Total: -15.97 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.92 Total: -39.71 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.07 Total: -15.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.16 -9.66 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255057554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.816 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds