Wall clock time and date at job start Wed Apr 1 2020 03:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34769 * 119.99783 * 2 1 4 4 O 1.21725 * 119.99971 * 180.02562 * 3 2 1 5 5 C 1.46256 * 120.00222 * 0.02562 * 3 2 1 6 6 C 1.35027 * 120.00111 * 186.98098 * 5 3 2 7 7 C 1.46963 * 119.99853 * 10.71771 * 6 5 3 8 8 C 1.40022 * 120.09759 * 226.47013 * 7 6 5 9 9 C 1.37604 * 119.89659 * 179.97438 * 8 7 6 10 10 C 1.39176 * 120.09864 * 359.97438 * 9 8 7 11 11 O 1.35572 * 119.89890 * 179.97438 * 10 9 8 12 12 C 1.34787 * 116.99859 * 5.77054 * 11 10 9 13 13 H 1.08004 * 119.99909 * 354.93062 * 12 11 10 14 14 C 1.38717 * 119.99873 * 174.65305 * 12 11 10 15 15 N 1.31505 * 120.00133 * 0.27804 * 14 12 11 16 16 Si 1.86805 * 119.99741 * 180.27336 * 14 12 11 17 17 H 1.48502 * 109.47276 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46572 * 120.00137 * 16 14 12 19 19 H 1.48491 * 109.47260 * 240.00158 * 16 14 12 20 20 C 1.39173 * 120.20183 * 0.25533 * 10 9 8 21 21 C 1.37593 * 120.10669 * 359.48714 * 20 10 9 22 22 C 1.46497 * 119.99922 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.50260 * 180.02562 * 22 2 1 24 24 C 1.53123 * 109.50290 * 59.99892 * 22 2 1 25 25 C 1.53116 * 109.16062 * 182.40274 * 24 22 2 26 26 C 1.53046 * 109.27653 * 57.65519 * 25 24 22 27 27 N 1.46847 * 109.52238 * 300.81811 * 26 25 24 28 28 C 1.46895 * 110.99881 * 185.84038 * 27 26 25 29 29 C 1.46847 * 111.19463 * 61.74551 * 27 26 25 30 30 H 1.09004 * 109.47674 * 89.99890 * 1 2 3 31 31 H 1.09005 * 109.47228 * 209.99531 * 1 2 3 32 32 H 1.08997 * 109.47466 * 329.99847 * 1 2 3 33 33 H 1.07999 * 120.00367 * 6.97965 * 5 3 2 34 34 H 1.07999 * 119.99940 * 190.71798 * 6 5 3 35 35 H 1.08004 * 120.05464 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.94982 * 180.02562 * 9 8 7 37 37 H 0.97000 * 119.99949 * 180.02562 * 15 14 12 38 38 H 1.08006 * 119.94561 * 179.74309 * 20 10 9 39 39 H 1.08000 * 120.05726 * 180.28064 * 21 20 10 40 40 H 1.09000 * 109.52298 * 302.30926 * 24 22 2 41 41 H 1.09001 * 109.52470 * 62.43521 * 24 22 2 42 42 H 1.09000 * 109.50547 * 177.59320 * 25 24 22 43 43 H 1.08998 * 109.50831 * 297.67817 * 25 24 22 44 44 H 1.08989 * 109.46274 * 60.83794 * 26 25 24 45 45 H 1.09004 * 109.45882 * 180.81825 * 26 25 24 46 46 H 1.09004 * 109.47693 * 63.95498 * 28 27 26 47 47 H 1.09001 * 109.47464 * 183.95991 * 28 27 26 48 48 H 1.09003 * 109.47150 * 303.95767 * 28 27 26 49 49 H 1.09002 * 109.45944 * 178.24410 * 29 27 26 50 50 H 1.08998 * 109.46541 * 58.27183 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3560 1.1672 -0.0005 5 6 1.4075 2.4338 0.0006 6 6 2.0751 3.5989 -0.1416 7 6 3.4923 3.5910 -0.5304 8 6 4.4133 4.3913 0.1564 9 6 5.7394 4.3804 -0.2108 10 6 6.1657 3.5749 -1.2627 11 8 7.4731 3.5676 -1.6214 12 6 8.3243 4.2681 -0.8458 13 1 7.9443 4.8680 -0.0321 14 6 9.6889 4.2139 -1.0892 15 7 10.1516 3.4835 -2.0800 16 14 10.8692 5.1786 -0.0095 17 1 10.1024 5.9144 1.0278 18 1 11.8170 4.2426 0.6470 19 1 11.6265 6.1452 -0.8445 20 6 5.2530 2.7814 -1.9513 21 6 3.9259 2.7819 -1.5877 22 6 2.1975 -1.2687 -0.0006 23 1 3.2693 -1.0701 0.0000 24 6 1.8280 -2.0717 -1.2509 25 6 2.5513 -3.4208 -1.2136 26 6 2.1681 -4.1642 0.0681 27 7 2.5426 -3.3555 1.2351 28 6 2.3165 -4.0962 2.4833 29 6 1.8245 -2.0746 1.2459 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 0.3336 2.4373 0.1146 34 1 1.5675 4.5365 0.0305 35 1 4.0835 5.0164 0.9732 36 1 6.4506 4.9970 0.3186 37 1 11.1058 3.4453 -2.2500 38 1 5.5876 2.1611 -2.7696 39 1 3.2191 2.1623 -2.1197 40 1 0.7508 -2.2364 -1.2729 41 1 2.1304 -1.5198 -2.1409 42 1 2.2591 -4.0144 -2.0798 43 1 3.6287 -3.2568 -1.2315 44 1 1.0926 -4.3402 0.0781 45 1 2.6927 -5.1190 0.1047 46 1 2.9699 -4.9682 2.5119 47 1 2.5352 -3.4504 3.3338 48 1 1.2767 -4.4197 2.5307 49 1 2.0995 -1.5116 2.1379 50 1 0.7505 -2.2603 1.2504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255057554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:33 Heat of formation + Delta-G solvation = -18.017149 kcal Electronic energy + Delta-G solvation = -30186.266119 eV Core-core repulsion = 26179.375446 eV Total energy + Delta-G solvation = -4006.890673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.40783 -40.66070 -39.65486 -38.18483 -36.45734 -34.65285 -34.14263 -33.75807 -31.83117 -31.30128 -29.46575 -27.79831 -27.63330 -27.41269 -25.19277 -23.91351 -23.61789 -23.23110 -21.94705 -20.52860 -19.95470 -19.46484 -18.73670 -18.32066 -17.40241 -16.61194 -16.50194 -16.38036 -16.16720 -15.90633 -15.71267 -15.53955 -15.23606 -15.15250 -14.88611 -14.55371 -14.43826 -14.36206 -14.18744 -13.84652 -13.69502 -13.59508 -13.53089 -13.27009 -13.17462 -12.91134 -12.66667 -12.63805 -12.38003 -12.32146 -12.16158 -12.08397 -11.85848 -11.61905 -11.57111 -11.23911 -10.92922 -10.58872 -10.36925 -9.78276 -9.47703 -9.25926 -8.57138 -8.48672 -6.15926 0.01804 0.70702 1.09393 1.32928 1.44084 1.52555 2.04364 2.16832 2.45911 2.86411 3.03787 3.19497 3.52772 3.66046 3.76042 3.95900 3.97497 4.00002 4.06796 4.12870 4.15932 4.22018 4.36903 4.44852 4.48997 4.53048 4.53914 4.55842 4.59098 4.71020 4.74429 4.77503 4.86212 4.91097 4.96481 4.98305 5.03094 5.06301 5.09946 5.20305 5.23890 5.27303 5.33187 5.43234 5.61684 5.68209 5.72361 5.83505 6.02403 6.06206 6.10476 6.24877 6.53753 6.95328 7.39263 7.77739 8.75002 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.002634 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.254379 B =10626.599005 C =11929.551845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.524 3.476 4 O -0.568 6.568 5 C -0.230 4.230 6 C 0.005 3.995 7 C -0.155 4.155 8 C -0.049 4.049 9 C -0.256 4.256 10 C 0.126 3.874 11 O -0.232 6.232 12 C -0.415 4.415 13 H 0.102 0.898 14 C -0.025 4.025 15 N -0.921 5.921 16 Si 1.022 2.978 17 H -0.250 1.250 18 H -0.269 1.269 19 H -0.264 1.264 20 C -0.219 4.219 21 C 0.009 3.991 22 C 0.142 3.858 23 H 0.060 0.940 24 C -0.119 4.119 25 C -0.116 4.116 26 C 0.058 3.942 27 N -0.568 5.568 28 C 0.029 3.971 29 C 0.063 3.937 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.273 0.727 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.059 0.941 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.759 -10.891 7.593 30.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.317 3.683 4 O -0.448 6.448 5 C -0.250 4.250 6 C -0.014 4.014 7 C -0.156 4.156 8 C -0.067 4.067 9 C -0.276 4.276 10 C 0.075 3.925 11 O -0.138 6.138 12 C -0.491 4.491 13 H 0.119 0.881 14 C -0.222 4.222 15 N -0.559 5.559 16 Si 0.841 3.159 17 H -0.174 1.174 18 H -0.194 1.194 19 H -0.189 1.189 20 C -0.239 4.239 21 C -0.009 4.009 22 C 0.037 3.963 23 H 0.079 0.921 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.069 4.069 27 N -0.294 5.294 28 C -0.119 4.119 29 C -0.066 4.066 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.193 0.807 34 H 0.189 0.811 35 H 0.166 0.834 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.346 -10.981 7.284 29.458 hybrid contribution 0.545 -0.091 0.153 0.574 sum -25.801 -11.071 7.437 29.044 Atomic orbital electron populations 1.22094 0.77216 1.04705 1.03182 1.47903 1.08314 1.04688 1.73380 1.19209 0.87304 0.85784 0.76052 1.91004 1.15737 1.87417 1.50682 1.23172 1.01528 0.90268 1.10040 1.22621 0.90489 0.99294 0.88983 1.18876 0.95079 1.01854 0.99786 1.21166 0.91154 0.96546 0.97850 1.21092 0.98029 1.06108 1.02339 1.19985 0.84859 0.93994 0.93618 1.83877 1.14005 1.65630 1.50324 1.21927 0.87532 1.26374 1.13242 0.88056 1.26684 0.98141 0.98522 0.98855 1.70184 1.15005 1.40126 1.30632 0.84491 0.76797 0.77356 0.77269 1.17364 1.19369 1.18910 1.20173 0.93813 1.05041 1.04839 1.20621 0.92732 0.92866 0.94672 1.20867 0.96835 0.83180 0.95384 0.92130 1.21843 1.01570 0.95853 0.96435 1.21576 1.00207 0.95616 0.98070 1.22145 0.99259 0.96351 0.89138 1.61748 1.58876 1.04682 1.04084 1.22356 1.00321 0.98577 0.90618 1.22213 0.96714 0.90360 0.97313 0.91320 0.89965 0.88677 0.80666 0.81124 0.83437 0.86249 0.91769 0.88241 0.86548 0.89576 0.92884 0.88962 0.93244 0.93208 0.89783 0.90587 0.91767 0.94199 0.92201 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.21 127.77 1.18 1.89 16 2 N -0.61 -12.95 2.76 -827.49 -2.29 -15.24 16 3 C 0.52 14.87 6.74 86.33 0.58 15.45 16 4 O -0.57 -23.08 11.65 -4.43 -0.05 -23.13 16 5 C -0.23 -4.69 9.15 23.62 0.22 -4.48 16 6 C 0.01 0.12 9.79 23.82 0.23 0.36 16 7 C -0.16 -5.54 4.43 -20.13 -0.09 -5.63 16 8 C -0.05 -1.89 9.78 22.55 0.22 -1.67 16 9 C -0.26 -12.43 9.14 22.35 0.20 -12.22 16 10 C 0.13 7.06 6.66 22.72 0.15 7.21 16 11 O -0.23 -15.20 9.74 -20.34 -0.20 -15.40 16 12 C -0.41 -25.82 9.48 67.93 0.64 -25.17 16 13 H 0.10 5.82 5.18 -2.91 -0.02 5.80 16 14 C -0.02 -1.49 5.49 84.86 0.47 -1.02 16 15 N -0.92 -59.41 13.67 21.62 0.30 -59.11 16 16 Si 1.02 45.09 29.55 68.60 2.03 47.11 16 17 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 C -0.22 -11.06 9.97 22.34 0.22 -10.84 16 21 C 0.01 0.39 6.67 22.55 0.15 0.54 16 22 C 0.14 3.36 2.69 45.05 0.12 3.48 16 23 H 0.06 2.10 6.90 -2.39 -0.02 2.08 16 24 C -0.12 -2.23 5.32 30.67 0.16 -2.06 16 25 C -0.12 -2.05 6.09 30.65 0.19 -1.86 16 26 C 0.06 0.90 5.46 86.33 0.47 1.37 16 27 N -0.57 -11.13 4.91 -922.58 -4.53 -15.66 16 28 C 0.03 0.43 9.62 127.69 1.23 1.66 16 29 C 0.06 1.22 4.74 86.33 0.41 1.63 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 0.61 6.40 -2.38 -0.02 0.59 16 32 H 0.09 0.61 6.02 -2.39 -0.01 0.60 16 33 H 0.18 1.81 6.14 -2.91 -0.02 1.79 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.12 5.78 5.62 -2.91 -0.02 5.77 16 37 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 38 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.12 4.32 7.27 -2.91 -0.02 4.30 16 40 H 0.09 1.17 7.60 -2.39 -0.02 1.15 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 46 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.06 0.99 8.02 -2.39 -0.02 0.97 16 48 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 50 H 0.06 0.83 6.62 -2.39 -0.02 0.82 16 Total: -1.00 -86.73 395.47 2.95 -83.78 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.94 Total: 29.02 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 6.76 Total: -31.37 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -6.52 Total: -90.01 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.25 Total: -38.52 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -86.73 2.95 -83.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255057554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.765 kcal (2) G-P(sol) polarization free energy of solvation -86.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds