Wall clock time and date at job start Wed Apr 1 2020 03:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46847 * 111.00099 * 2 1 4 4 C 1.53033 * 109.52253 * 185.83788 * 3 2 1 5 5 C 1.53115 * 109.27922 * 300.81877 * 4 3 2 6 6 C 1.53113 * 109.16341 * 57.65538 * 5 4 3 7 7 H 1.08999 * 109.50401 * 62.32250 * 6 5 4 8 8 C 1.52996 * 109.50657 * 182.40351 * 6 5 4 9 9 N 1.46503 * 109.47132 * 184.99734 * 8 6 5 10 10 C 1.34779 * 119.99897 * 180.02562 * 9 8 6 11 11 O 1.21722 * 120.00071 * 359.72388 * 10 9 8 12 12 C 1.46249 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.35024 * 120.00128 * 172.93622 * 12 10 9 14 14 C 1.46962 * 119.99681 * 348.69680 * 13 12 10 15 15 C 1.40024 * 120.09905 * 316.46393 * 14 13 12 16 16 C 1.37603 * 119.89380 * 179.72053 * 15 14 13 17 17 C 1.39176 * 120.10288 * 0.53778 * 16 15 14 18 18 O 1.35566 * 119.90089 * 179.74099 * 17 16 15 19 19 C 1.34785 * 116.99953 * 174.39614 * 18 17 16 20 20 H 1.07993 * 120.00214 * 5.05638 * 19 18 17 21 21 C 1.38720 * 119.99759 * 185.05703 * 19 18 17 22 22 N 1.31507 * 120.00032 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99833 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47101 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46623 * 120.00403 * 23 21 19 26 26 H 1.48501 * 109.47062 * 239.99972 * 23 21 19 27 27 C 1.39182 * 120.20001 * 359.76090 * 17 16 15 28 28 C 1.37597 * 120.10221 * 359.96019 * 27 17 16 29 29 C 1.46852 * 110.99874 * 124.20808 * 2 1 3 30 30 H 1.09004 * 109.46869 * 63.95845 * 1 2 3 31 31 H 1.09000 * 109.47503 * 183.95577 * 1 2 3 32 32 H 1.09000 * 109.47471 * 303.95474 * 1 2 3 33 33 H 1.09001 * 109.46209 * 65.81935 * 3 2 1 34 34 H 1.09003 * 109.46040 * 305.85098 * 3 2 1 35 35 H 1.09009 * 109.50287 * 180.87512 * 4 3 2 36 36 H 1.09002 * 109.53529 * 60.78227 * 4 3 2 37 37 H 1.09002 * 109.52024 * 297.75038 * 5 4 3 38 38 H 1.08997 * 109.57641 * 177.59673 * 5 4 3 39 39 H 1.09004 * 109.46895 * 65.00369 * 8 6 5 40 40 H 1.08993 * 109.47309 * 304.99999 * 8 6 5 41 41 H 0.97000 * 119.99684 * 0.02562 * 9 8 6 42 42 H 1.08001 * 120.00276 * 352.93273 * 12 10 9 43 43 H 1.07995 * 120.00136 * 168.69827 * 13 12 10 44 44 H 1.07997 * 120.05494 * 359.97438 * 15 14 13 45 45 H 1.08003 * 119.94818 * 180.28043 * 16 15 14 46 46 H 0.97002 * 120.00223 * 179.97438 * 22 21 19 47 47 H 1.08003 * 119.94905 * 179.97438 * 27 17 16 48 48 H 1.08001 * 120.04682 * 180.02562 * 28 27 17 49 49 H 1.09002 * 109.46105 * 54.14265 * 29 2 1 50 50 H 1.09003 * 109.45659 * 294.17870 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1187 0.5370 1.0144 6 6 3.5181 -0.8714 1.0210 7 1 3.7819 -1.3839 0.0958 8 6 4.0680 -1.6558 2.2140 9 7 3.5870 -3.0382 2.1531 10 6 3.9457 -3.9192 3.1079 11 8 4.6735 -3.5676 4.0180 12 6 3.4660 -5.2995 3.0468 13 6 3.9365 -6.2170 3.9185 14 6 5.1001 -5.9027 4.7593 15 6 6.2118 -5.2554 4.2063 16 6 7.2967 -4.9579 4.9988 17 6 7.2948 -5.3094 6.3454 18 8 8.3679 -5.0191 7.1212 19 6 8.2587 -5.2797 8.4391 20 1 7.3785 -5.7757 8.8203 21 6 9.2771 -4.9108 9.3057 22 7 10.3488 -4.3063 8.8415 23 14 9.1255 -5.2713 11.1323 24 1 7.8333 -5.9534 11.3966 25 1 10.2446 -6.1499 11.5579 26 1 9.1786 -3.9979 11.8943 27 6 6.1945 -5.9585 6.8980 28 6 5.1029 -6.2549 6.1145 29 6 1.9952 -0.7708 1.1338 30 1 -0.3633 0.4512 -0.9234 31 1 -0.3634 -1.0252 0.0709 32 1 -0.3634 0.5740 0.8524 33 1 1.7324 1.8608 0.9376 34 1 1.5635 1.9257 -0.8330 35 1 3.9099 2.3512 -0.1311 36 1 3.7819 0.8571 -1.0906 37 1 3.8886 1.0355 1.9560 38 1 5.1998 0.4714 0.8918 39 1 3.7280 -1.1933 3.1407 40 1 5.1574 -1.6484 2.1826 41 1 3.0103 -3.3194 1.4256 42 1 2.7353 -5.5849 2.3044 43 1 3.4578 -7.1818 3.9978 44 1 6.2161 -4.9863 3.1604 45 1 8.1527 -4.4546 4.5741 46 1 11.0608 -4.0479 9.4476 47 1 6.1975 -6.2298 7.9434 48 1 4.2494 -6.7582 6.5443 49 1 1.5633 -1.7715 1.1243 50 1 1.7323 -0.2707 2.0660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255663517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:22 Heat of formation + Delta-G solvation = -13.945806 kcal Electronic energy + Delta-G solvation = -29231.053413 eV Core-core repulsion = 25224.339287 eV Total energy + Delta-G solvation = -4006.714126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.00928 -39.29412 -38.59468 -36.55452 -35.28682 -33.53696 -33.01012 -32.11901 -31.32003 -30.09020 -28.16414 -27.21952 -26.25466 -25.33912 -23.43209 -22.91917 -21.82944 -21.63231 -20.84743 -20.14302 -19.11938 -17.90800 -17.18980 -16.61654 -16.13581 -15.94376 -15.65783 -15.05831 -14.88229 -14.58847 -14.56522 -14.42703 -14.18287 -13.83626 -13.56594 -13.44712 -13.22333 -13.16144 -12.91959 -12.79644 -12.64768 -12.49635 -12.42467 -12.15116 -11.79305 -11.67863 -11.42616 -11.34382 -11.01284 -11.00007 -10.79861 -10.69007 -10.66318 -10.57619 -10.38721 -9.46516 -9.38210 -9.13523 -8.91788 -8.74312 -8.67358 -7.89082 -6.83442 -6.43971 -3.99595 1.27822 2.45204 2.73186 3.14695 3.16131 3.21166 3.37009 3.49591 3.68795 3.98667 4.38563 4.41821 4.53945 4.69567 4.72369 4.87485 4.98613 5.05883 5.08471 5.10607 5.15073 5.20268 5.25819 5.38109 5.38345 5.40680 5.42884 5.46873 5.51479 5.61550 5.62434 5.71567 5.76085 5.83386 5.87870 5.89439 6.07716 6.27836 6.36221 6.46607 6.57310 6.63096 6.65181 6.66685 6.81937 7.06447 7.15172 7.39221 7.48039 7.52977 7.71354 7.95109 8.03054 8.59098 9.01875 9.74282 10.74027 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002026 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.034235 B =13819.532294 C =14879.668303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.095 4.095 7 H 0.085 0.915 8 C 0.127 3.873 9 N -0.737 5.737 10 C 0.537 3.463 11 O -0.511 6.511 12 C -0.267 4.267 13 C 0.027 3.973 14 C -0.189 4.189 15 C 0.013 3.987 16 C -0.203 4.203 17 C 0.171 3.829 18 O -0.173 6.173 19 C -0.389 4.389 20 H 0.094 0.906 21 C 0.038 3.962 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.251 4.251 28 C -0.042 4.042 29 C 0.060 3.940 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.720 6.385 -18.400 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.074 4.074 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.114 4.114 7 H 0.104 0.896 8 C 0.002 3.998 9 N -0.390 5.390 10 C 0.327 3.673 11 O -0.388 6.388 12 C -0.288 4.288 13 C 0.007 3.993 14 C -0.190 4.190 15 C -0.005 4.005 16 C -0.222 4.222 17 C 0.117 3.883 18 O -0.076 6.076 19 C -0.465 4.465 20 H 0.112 0.888 21 C -0.166 4.166 22 N -0.495 5.495 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.270 4.270 28 C -0.060 4.060 29 C -0.068 4.068 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.229 0.771 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.124 0.876 49 H 0.093 0.907 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.571 6.632 -18.096 26.080 hybrid contribution -0.871 0.181 1.271 1.551 sum -18.442 6.813 -16.826 25.877 Atomic orbital electron populations 1.22357 0.87206 1.02016 1.00796 1.61920 1.07580 1.13866 1.43447 1.22123 0.95832 0.89047 1.00435 1.21570 0.94180 1.00300 0.99306 1.21567 1.00506 0.94451 0.98874 1.21421 0.94418 0.96579 0.98965 0.89619 1.21283 0.99451 0.81343 0.97683 1.46006 1.53717 1.10824 1.28471 1.18497 0.80540 0.86358 0.81892 1.91002 1.34908 1.79336 1.33513 1.22600 1.07609 0.93096 1.05513 1.22329 0.90832 0.96451 0.89685 1.18292 0.95423 1.11055 0.94229 1.20440 0.91201 0.91353 0.97544 1.20007 1.00680 1.09468 0.92061 1.19526 0.86710 0.91088 0.91021 1.83906 1.32179 1.71858 1.19642 1.21442 1.06108 1.39401 0.79563 0.88846 1.25330 0.94824 0.96188 1.00302 1.70033 1.06875 1.36750 1.35803 0.85630 0.78717 0.78412 0.80576 1.19046 1.20133 1.20126 1.20953 0.95667 1.09395 1.01008 1.20741 0.96358 0.96399 0.92538 1.22160 0.94902 0.98250 0.91483 0.91325 0.91315 0.95677 0.94880 0.90821 0.91269 0.90966 0.91788 0.91034 0.91752 0.91153 0.77148 0.86221 0.86128 0.88090 0.86859 0.92033 0.85669 0.87639 0.90662 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.62 60.06 0.58 0.73 16 2 N -0.54 -4.14 4.91 -242.95 -1.19 -5.34 16 3 C 0.05 0.37 5.46 -3.84 -0.02 0.35 16 4 C -0.12 -0.77 6.09 -26.65 -0.16 -0.94 16 5 C -0.12 -0.89 5.29 -26.61 -0.14 -1.03 16 6 C -0.09 -0.76 2.39 -90.54 -0.22 -0.98 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 8 C 0.13 1.36 5.07 -4.04 -0.02 1.34 16 9 N -0.74 -8.01 5.29 -61.76 -0.33 -8.34 16 10 C 0.54 7.93 6.77 -13.04 -0.09 7.84 16 11 O -0.51 -10.06 12.17 5.17 0.06 -10.00 16 12 C -0.27 -3.38 9.90 -37.51 -0.37 -3.75 16 13 C 0.03 0.38 9.80 -37.19 -0.36 0.01 16 14 C -0.19 -3.54 4.54 -105.03 -0.48 -4.02 16 15 C 0.01 0.27 6.59 -39.14 -0.26 0.01 16 16 C -0.20 -4.73 9.97 -39.46 -0.39 -5.12 16 17 C 0.17 4.42 6.66 -38.88 -0.26 4.16 16 18 O -0.17 -5.15 9.74 0.74 0.01 -5.14 16 19 C -0.39 -11.19 9.48 30.91 0.29 -10.90 16 20 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 23 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.25 -5.81 9.14 -39.46 -0.36 -6.17 16 28 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 29 C 0.06 0.47 4.61 -3.83 -0.02 0.46 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 8.02 -51.93 -0.42 -0.02 16 32 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.39 3.16 7.65 -40.82 -0.31 2.84 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.10 1.87 7.02 -52.49 -0.37 1.50 16 45 H 0.11 2.58 8.06 -52.48 -0.42 2.15 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.13 2.87 5.62 -52.48 -0.29 2.57 16 48 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 49 H 0.07 0.56 7.11 -51.93 -0.37 0.19 16 50 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -34.02 402.15 -10.34 -44.36 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.93 Total: 5.67 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.76 Total: -18.24 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.76 Total: -38.61 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.07 Total: -15.14 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.02 -10.34 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255663517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.415 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds