Wall clock time and date at job start Wed Apr 1 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47097 * 2 1 4 4 C 1.37092 * 119.99837 * 275.25607 * 3 2 1 5 5 H 1.07998 * 120.00148 * 182.70197 * 4 3 2 6 6 C 1.38953 * 120.00522 * 2.69953 * 4 3 2 7 7 N 1.31412 * 119.99428 * 14.41754 * 6 4 3 8 8 Si 1.86798 * 120.00472 * 194.41665 * 6 4 3 9 9 H 1.48506 * 109.46851 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47076 * 119.99796 * 8 6 4 11 11 H 1.48497 * 109.47184 * 240.00088 * 8 6 4 12 12 C 1.34776 * 119.99642 * 95.25967 * 3 2 1 13 13 O 1.21285 * 120.00408 * 5.92567 * 12 3 2 14 14 C 1.50705 * 119.99513 * 185.92757 * 12 3 2 15 15 C 1.53006 * 109.49635 * 293.71788 * 14 12 3 16 16 C 1.53043 * 109.49516 * 173.65622 * 14 12 3 17 17 C 1.53040 * 109.53655 * 178.68655 * 16 14 12 18 18 C 1.53188 * 109.31898 * 61.35877 * 17 16 14 19 19 N 1.46928 * 108.77469 * 305.36921 * 18 17 16 20 20 C 1.34779 * 120.63149 * 233.62646 * 19 18 17 21 21 O 1.21547 * 120.00018 * 185.28246 * 20 19 18 22 22 C 1.47847 * 119.99635 * 5.27722 * 20 19 18 23 23 C 1.39579 * 120.14436 * 34.08612 * 22 20 19 24 24 C 1.37957 * 119.85140 * 179.74307 * 23 22 20 25 25 C 1.38364 * 120.14485 * 0.53218 * 24 23 22 26 26 C 1.38360 * 120.29064 * 359.74360 * 25 24 23 27 27 C 1.37951 * 120.14439 * 359.97438 * 26 25 24 28 28 C 1.46931 * 118.74086 * 53.60652 * 19 18 17 29 29 H 1.08998 * 109.47488 * 184.30795 * 1 2 3 30 30 H 1.09003 * 109.47110 * 304.30494 * 1 2 3 31 31 H 1.08993 * 109.47488 * 64.30767 * 1 2 3 32 32 H 1.09000 * 109.46882 * 239.99907 * 2 1 3 33 33 H 1.08995 * 109.47152 * 120.00391 * 2 1 3 34 34 H 0.97003 * 119.99581 * 179.97438 * 7 6 4 35 35 H 1.08991 * 109.46965 * 64.10770 * 15 14 12 36 36 H 1.08999 * 109.46911 * 184.10704 * 15 14 12 37 37 H 1.08994 * 109.47036 * 304.10751 * 15 14 12 38 38 H 1.09004 * 109.45750 * 298.70142 * 16 14 12 39 39 H 1.08993 * 109.46241 * 58.67452 * 16 14 12 40 40 H 1.09000 * 109.49542 * 181.31803 * 17 16 14 41 41 H 1.09011 * 109.49499 * 301.40927 * 17 16 14 42 42 H 1.09005 * 109.58464 * 65.15222 * 18 17 16 43 43 H 1.09001 * 109.58841 * 185.43680 * 18 17 16 44 44 H 1.08000 * 120.07100 * 0.02562 * 23 22 20 45 45 H 1.08005 * 119.92888 * 180.28055 * 24 23 22 46 46 H 1.07993 * 119.85278 * 179.76711 * 25 24 23 47 47 H 1.07996 * 119.92378 * 179.97438 * 26 25 24 48 48 H 1.08006 * 120.07507 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.58439 * 186.60476 * 28 19 18 50 50 H 1.08998 * 109.58406 * 66.17300 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1443 2.0637 -1.1823 5 1 2.5453 3.0664 -1.1869 6 6 1.7560 1.4654 -2.3748 7 7 1.0163 0.3794 -2.3545 8 14 2.2854 2.2046 -4.0065 9 1 3.1071 3.4163 -3.7576 10 1 3.0875 1.2102 -4.7635 11 1 1.0831 2.5748 -4.7956 12 6 2.3438 1.9808 1.1623 13 8 2.3356 1.3457 2.1955 14 6 2.7179 3.4406 1.1781 15 6 4.0326 3.6391 0.4210 16 6 2.8861 3.9091 2.6253 17 6 3.2980 5.3830 2.6415 18 6 2.1980 6.2238 1.9859 19 7 1.9287 5.6872 0.6449 20 6 1.9723 6.4894 -0.4373 21 8 1.6543 6.0568 -1.5278 22 6 2.4067 7.8957 -0.2979 23 6 3.3853 8.2376 0.6368 24 6 3.7900 9.5509 0.7581 25 6 3.2202 10.5298 -0.0365 26 6 2.2456 10.1984 -0.9610 27 6 1.8361 8.8881 -1.0964 28 6 1.6113 4.2593 0.5059 29 1 -0.3634 -1.0247 0.0772 30 1 -0.3633 0.5792 0.8489 31 1 -0.3634 0.4455 -0.9260 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.7450 -0.0381 -3.1870 35 1 3.8917 3.3750 -0.6270 36 1 4.3404 4.6821 0.4947 37 1 4.8022 3.0016 0.8560 38 1 1.9424 3.7900 3.1576 39 1 3.6562 3.3117 3.1132 40 1 3.4404 5.7096 3.6717 41 1 4.2290 5.5067 2.0882 42 1 1.2912 6.1732 2.5886 43 1 2.5276 7.2598 1.9078 44 1 3.8280 7.4750 1.2604 45 1 4.5504 9.8161 1.4778 46 1 3.5379 11.5569 0.0650 47 1 1.8045 10.9673 -1.5779 48 1 1.0749 8.6307 -1.8181 49 1 1.5547 3.9988 -0.5510 50 1 0.6567 4.0486 0.9880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266067148.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:44 Heat of formation + Delta-G solvation = 7.119766 kcal Electronic energy + Delta-G solvation = -32434.247005 eV Core-core repulsion = 28428.446351 eV Total energy + Delta-G solvation = -4005.800654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81633 -39.39653 -38.10630 -36.91192 -35.12008 -33.52687 -31.88150 -31.38924 -31.13992 -31.03105 -29.23399 -26.66694 -25.68993 -25.02156 -23.60434 -22.95158 -22.55384 -22.00281 -20.27120 -19.24448 -18.26296 -17.73033 -16.89638 -16.59272 -16.10665 -15.66485 -15.14386 -14.92346 -14.47582 -14.38395 -14.24097 -14.12485 -13.78586 -13.46216 -13.42215 -13.15786 -13.06304 -12.91635 -12.52869 -12.44122 -12.37240 -11.73246 -11.72655 -11.51991 -11.32930 -11.25294 -11.09653 -11.02483 -10.79311 -10.72588 -10.53906 -10.45924 -10.36323 -10.19311 -9.74345 -9.65313 -9.28334 -9.12304 -8.98505 -8.78093 -8.38640 -8.17250 -7.74250 -6.25965 -3.84666 0.82293 1.17117 2.91753 3.14985 3.18504 3.28405 3.35869 3.69755 3.91550 4.12911 4.49415 4.67286 4.70517 4.75416 4.88463 5.02550 5.05716 5.10461 5.18582 5.22025 5.31051 5.50274 5.57178 5.61127 5.64156 5.79390 5.81044 5.90830 6.00925 6.14362 6.16433 6.20662 6.25642 6.29143 6.35922 6.42591 6.46747 6.61754 6.65163 6.70220 6.79210 6.82634 6.87295 6.90180 6.97887 7.12986 7.41287 7.57319 7.67644 7.79334 7.94894 8.39772 8.48235 9.09648 9.55837 9.94558 10.62481 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.004318 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.063040 B = 6482.680111 C = 8007.683213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.130 3.870 3 N -0.435 5.435 4 C -0.340 4.340 5 H 0.123 0.877 6 C 0.035 3.965 7 N -0.860 5.860 8 Si 0.915 3.085 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.459 3.541 13 O -0.611 6.611 14 C -0.070 4.070 15 C -0.147 4.147 16 C -0.090 4.090 17 C -0.139 4.139 18 C 0.076 3.924 19 N -0.598 5.598 20 C 0.552 3.448 21 O -0.525 6.525 22 C -0.121 4.121 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.103 4.103 26 C -0.127 4.127 27 C -0.067 4.067 28 C 0.108 3.892 29 H 0.029 0.971 30 H 0.015 0.985 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.132 0.868 49 H 0.137 0.863 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 17.121 5.258 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.007 3.993 3 N -0.151 5.151 4 C -0.466 4.466 5 H 0.140 0.860 6 C -0.168 4.168 7 N -0.499 5.499 8 Si 0.742 3.258 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.247 3.753 13 O -0.499 6.499 14 C -0.074 4.074 15 C -0.205 4.205 16 C -0.128 4.128 17 C -0.177 4.177 18 C -0.046 4.046 19 N -0.330 5.330 20 C 0.340 3.660 21 O -0.402 6.402 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.122 4.122 26 C -0.145 4.145 27 C -0.086 4.086 28 C -0.013 4.013 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.122 0.878 44 H 0.160 0.840 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.150 0.850 49 H 0.154 0.846 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.622 16.383 4.987 17.504 hybrid contribution 0.116 0.272 -0.731 0.788 sum 3.737 16.655 4.256 17.591 Atomic orbital electron populations 1.22156 0.96875 0.98735 1.01950 1.21418 0.94342 0.82978 1.00548 1.43863 1.54261 1.11989 1.05013 1.20321 1.41748 1.01169 0.83395 0.85989 1.25222 0.95478 0.96424 0.99708 1.70207 1.32394 1.20268 1.27054 0.86003 0.78956 0.79069 0.81785 1.18833 1.20747 1.20608 1.19626 0.83965 0.88084 0.83644 1.90506 1.60586 1.66002 1.32770 1.20727 0.96612 0.94095 0.95934 1.22060 0.95327 1.00406 1.02665 1.21273 1.02345 0.93767 0.95408 1.22040 0.98598 0.96489 1.00530 1.22471 0.99218 0.99376 0.83578 1.48015 1.68928 1.09901 1.06190 1.18314 0.78156 0.85258 0.84256 1.90830 1.48086 1.75469 1.25828 1.20067 0.99687 0.93876 0.98798 1.21664 0.96419 0.97208 0.96469 1.21126 1.00435 0.92821 1.00304 1.21324 0.95978 0.99481 0.95368 1.21134 0.98132 0.96151 0.99122 1.21267 0.98485 0.91969 0.96853 1.22274 0.96039 0.76671 1.06362 0.95177 0.96554 0.88654 0.87879 0.94567 0.92376 0.89603 0.93190 0.92991 0.91767 0.91135 0.90840 0.91153 0.91517 0.87844 0.84038 0.85480 0.85817 0.85506 0.84991 0.84599 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.62 37.16 0.36 -2.93 16 2 C 0.13 3.23 5.50 -4.04 -0.02 3.21 16 3 N -0.43 -10.87 2.63 -114.81 -0.30 -11.17 16 4 C -0.34 -8.43 7.05 -14.93 -0.11 -8.53 16 5 H 0.12 2.96 2.76 -52.49 -0.14 2.82 16 6 C 0.04 0.88 5.25 -17.47 -0.09 0.79 16 7 N -0.86 -21.61 7.39 55.50 0.41 -21.20 16 8 Si 0.92 20.41 29.58 -169.99 -5.03 15.38 16 9 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.46 11.02 6.46 -10.98 -0.07 10.94 16 13 O -0.61 -16.13 15.44 5.55 0.09 -16.04 16 14 C -0.07 -1.35 0.49 -155.53 -0.08 -1.43 16 15 C -0.15 -2.72 7.76 37.16 0.29 -2.44 16 16 C -0.09 -1.48 4.05 -26.69 -0.11 -1.59 16 17 C -0.14 -1.68 5.41 -26.61 -0.14 -1.82 16 18 C 0.08 0.93 5.53 -3.71 -0.02 0.91 16 19 N -0.60 -9.65 2.48 -173.88 -0.43 -10.09 16 20 C 0.55 9.49 7.40 -12.33 -0.09 9.39 16 21 O -0.53 -11.20 16.25 5.32 0.09 -11.12 16 22 C -0.12 -1.64 5.45 -104.97 -0.57 -2.21 16 23 C -0.10 -1.07 7.41 -39.18 -0.29 -1.36 16 24 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 25 C -0.10 -0.86 10.04 -39.49 -0.40 -1.26 16 26 C -0.13 -1.20 10.03 -39.64 -0.40 -1.60 16 27 C -0.07 -0.82 9.61 -39.19 -0.38 -1.19 16 28 C 0.11 2.10 4.66 -3.71 -0.02 2.08 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 2.41 5.87 -51.93 -0.30 2.10 16 32 H 0.10 2.67 5.87 -51.93 -0.30 2.36 16 33 H 0.04 0.91 7.21 -51.93 -0.37 0.54 16 34 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 35 H 0.09 1.78 5.01 -51.93 -0.26 1.52 16 36 H 0.05 0.80 5.87 -51.93 -0.30 0.50 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.83 5.77 -51.92 -0.30 0.53 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 1.05 3.49 -51.94 -0.18 0.87 16 44 H 0.14 1.38 5.06 -52.49 -0.27 1.12 16 45 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 47 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.13 1.64 7.99 -52.48 -0.42 1.22 16 49 H 0.14 3.08 3.59 -51.93 -0.19 2.89 16 50 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -30.32 372.79 -8.92 -39.24 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.82 Total: 9.92 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.53 Total: -0.54 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.32 Total: -42.45 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: 0.17 Total: -27.16 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.32 -8.92 -39.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266067148.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.359 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds