Wall clock time and date at job start Wed Apr 1 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47026 * 2 1 4 4 C 1.37098 * 120.00338 * 265.47635 * 3 2 1 5 5 H 1.07997 * 120.00306 * 178.15503 * 4 3 2 6 6 C 1.38954 * 119.99570 * 358.15335 * 4 3 2 7 7 N 1.31411 * 120.00023 * 308.10531 * 6 4 3 8 8 Si 1.86795 * 119.99845 * 128.10999 * 6 4 3 9 9 H 1.48496 * 109.47212 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.46957 * 299.99682 * 8 6 4 11 11 H 1.48504 * 109.47460 * 59.99666 * 8 6 4 12 12 C 1.34777 * 120.00067 * 85.48093 * 3 2 1 13 13 O 1.21296 * 120.00037 * 4.03635 * 12 3 2 14 14 C 1.50696 * 120.00322 * 184.03506 * 12 3 2 15 15 C 1.53004 * 109.49565 * 57.51847 * 14 12 3 16 16 C 1.53040 * 109.50085 * 177.61288 * 14 12 3 17 17 C 1.53034 * 109.54070 * 181.31829 * 16 14 12 18 18 C 1.53197 * 109.31301 * 298.63640 * 17 16 14 19 19 N 1.46924 * 108.77256 * 54.63409 * 18 17 16 20 20 C 1.34780 * 120.62848 * 126.41071 * 19 18 17 21 21 O 1.21552 * 120.00167 * 185.29695 * 20 19 18 22 22 C 1.47847 * 120.00026 * 5.30564 * 20 19 18 23 23 C 1.39571 * 120.14772 * 29.55395 * 22 20 19 24 24 C 1.37961 * 119.85562 * 179.74898 * 23 22 20 25 25 C 1.38354 * 120.13986 * 0.53580 * 24 23 22 26 26 C 1.38362 * 120.29927 * 359.73965 * 25 24 23 27 27 C 1.37960 * 120.13902 * 359.97438 * 26 25 24 28 28 C 1.46925 * 118.74308 * 306.39047 * 19 18 17 29 29 H 1.09002 * 109.46910 * 184.97646 * 1 2 3 30 30 H 1.09002 * 109.47022 * 304.98142 * 1 2 3 31 31 H 1.08997 * 109.46998 * 64.97955 * 1 2 3 32 32 H 1.09004 * 109.47054 * 239.99889 * 2 1 3 33 33 H 1.09004 * 109.46789 * 120.00522 * 2 1 3 34 34 H 0.96998 * 120.00334 * 354.12583 * 7 6 4 35 35 H 1.09008 * 109.46689 * 66.77625 * 15 14 12 36 36 H 1.09003 * 109.47156 * 186.76827 * 15 14 12 37 37 H 1.08995 * 109.47336 * 306.77994 * 15 14 12 38 38 H 1.09003 * 109.46210 * 301.34459 * 16 14 12 39 39 H 1.09008 * 109.45577 * 61.29900 * 16 14 12 40 40 H 1.08996 * 109.49806 * 178.68817 * 17 16 14 41 41 H 1.08999 * 109.52473 * 58.60725 * 17 16 14 42 42 H 1.08991 * 109.58876 * 294.84715 * 18 17 16 43 43 H 1.08999 * 109.70244 * 174.48753 * 18 17 16 44 44 H 1.08005 * 120.06835 * 0.02562 * 23 22 20 45 45 H 1.07994 * 119.92648 * 180.27832 * 24 23 22 46 46 H 1.08008 * 119.85193 * 179.72144 * 25 24 23 47 47 H 1.07992 * 119.93064 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.06926 * 179.97438 * 27 26 25 49 49 H 1.08995 * 109.58690 * 293.82551 * 28 19 18 50 50 H 1.08999 * 109.70623 * 173.46549 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3351 1.9963 -1.1836 5 1 2.6667 3.0241 -1.1862 6 6 2.2296 1.2973 -2.3798 7 7 2.8101 0.1254 -2.5094 8 14 1.2628 2.0233 -3.8037 9 1 1.3028 1.0885 -4.9568 10 1 -0.1466 2.2366 -3.3873 11 1 1.8641 3.3223 -4.1991 12 6 2.1563 2.0472 1.1636 13 8 1.9464 1.4805 2.2153 14 6 2.5712 3.4959 1.1580 15 6 1.5748 4.3093 0.3294 16 6 2.5953 4.0259 2.5935 17 6 2.9847 5.5059 2.5862 18 6 4.3882 5.6576 1.9912 19 7 4.4118 5.0208 0.6673 20 6 4.8313 5.7043 -0.4160 21 8 4.7559 5.2001 -1.5195 22 6 5.3832 7.0672 -0.2622 23 6 6.0395 7.4289 0.9153 24 6 6.5568 8.7007 1.0504 25 6 6.4164 9.6202 0.0262 26 6 5.7619 9.2700 -1.1415 27 6 5.2452 7.9996 -1.2916 28 6 3.9699 3.6248 0.5467 29 1 -0.3633 -1.0238 0.0891 30 1 -0.3633 0.5892 0.8420 31 1 -0.3633 0.4346 -0.9312 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3819 -0.2134 -1.8030 35 1 0.6067 4.3172 0.8304 36 1 1.9382 5.3316 0.2250 37 1 1.4695 3.8585 -0.6574 38 1 1.6070 3.9126 3.0391 39 1 3.3232 3.4617 3.1767 40 1 2.9790 5.8886 3.6068 41 1 2.2711 6.0673 1.9831 42 1 5.1156 5.1733 2.6425 43 1 4.6331 6.7151 1.8924 44 1 6.1460 6.7132 1.7172 45 1 7.0688 8.9804 1.9592 46 1 6.8193 10.6160 0.1387 47 1 5.6561 9.9922 -1.9373 48 1 4.7342 7.7276 -2.2033 49 1 4.6632 2.9747 1.0804 50 1 3.9369 3.3392 -0.5047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266067151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:47 Heat of formation + Delta-G solvation = 0.566515 kcal Electronic energy + Delta-G solvation = -32274.692310 eV Core-core repulsion = 28268.607485 eV Total energy + Delta-G solvation = -4006.084825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.79150 -39.43209 -38.13839 -36.91914 -35.20382 -33.59536 -31.85074 -31.68975 -31.13621 -31.10330 -29.42939 -26.60412 -25.71860 -24.73174 -23.72860 -23.09135 -22.53662 -22.04705 -20.29874 -19.36974 -18.58751 -17.73994 -16.90141 -16.64022 -16.00695 -15.74080 -15.08470 -14.95726 -14.70241 -14.42948 -14.15603 -14.04156 -13.81217 -13.62126 -13.44120 -13.19444 -13.02743 -13.00774 -12.74365 -12.66271 -12.23377 -11.95749 -11.74640 -11.56756 -11.42385 -11.29973 -11.20906 -11.07539 -10.78614 -10.65637 -10.55435 -10.44658 -10.29624 -10.22604 -10.00855 -9.65174 -9.45683 -9.12125 -8.98946 -8.79711 -8.43477 -8.20861 -7.88356 -6.86699 -3.74231 0.81747 1.17712 2.92583 3.15055 3.25261 3.37752 3.53993 3.73440 3.87666 4.19028 4.49395 4.54844 4.66504 4.74314 4.82603 4.89048 5.04353 5.10499 5.19512 5.23799 5.32403 5.51139 5.54108 5.62654 5.64745 5.78345 5.80552 5.94138 6.02877 6.04044 6.14604 6.16142 6.19298 6.25816 6.27302 6.28141 6.35461 6.41951 6.47257 6.56881 6.64814 6.66883 6.71193 6.79473 6.86120 6.93692 7.06537 7.10809 7.55904 7.65939 8.04909 8.25293 8.40348 8.96346 9.53588 9.90042 10.27938 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.004072 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.401681 B = 6873.851898 C = 8317.920030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.086 3.914 3 N -0.423 5.423 4 C -0.492 4.492 5 H 0.125 0.875 6 C 0.050 3.950 7 N -0.813 5.813 8 Si 1.027 2.973 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.453 3.547 13 O -0.617 6.617 14 C -0.062 4.062 15 C -0.154 4.154 16 C -0.091 4.091 17 C -0.136 4.136 18 C 0.083 3.917 19 N -0.598 5.598 20 C 0.551 3.449 21 O -0.524 6.524 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.130 4.130 25 C -0.103 4.103 26 C -0.128 4.128 27 C -0.064 4.064 28 C 0.111 3.889 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.285 0.715 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.059 0.941 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.884 16.013 5.905 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.038 4.038 3 N -0.140 5.140 4 C -0.614 4.614 5 H 0.142 0.858 6 C -0.166 4.166 7 N -0.443 5.443 8 Si 0.852 3.148 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.242 3.758 13 O -0.505 6.505 14 C -0.066 4.066 15 C -0.211 4.211 16 C -0.129 4.129 17 C -0.174 4.174 18 C -0.039 4.039 19 N -0.331 5.331 20 C 0.339 3.661 21 O -0.400 6.400 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.148 4.148 25 C -0.121 4.121 26 C -0.146 4.146 27 C -0.083 4.083 28 C -0.011 4.011 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.158 0.842 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.152 0.848 49 H 0.077 0.923 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.232 15.059 4.251 16.210 hybrid contribution 0.509 0.349 1.644 1.756 sum 4.741 15.407 5.895 17.165 Atomic orbital electron populations 1.21924 0.97175 1.00228 1.01548 1.21657 0.93965 0.85245 1.02896 1.43679 1.53737 1.10811 1.05735 1.20573 1.56010 1.00699 0.84137 0.85786 1.26013 0.95805 0.94722 1.00044 1.70815 1.18901 1.21736 1.32830 0.84148 0.77682 0.76993 0.75946 1.20619 1.20810 1.20164 1.19566 0.84741 0.88138 0.83345 1.90500 1.59053 1.69727 1.31262 1.20603 0.95791 0.94459 0.95755 1.22132 0.97047 0.98718 1.03211 1.21302 1.02295 0.93656 0.95614 1.22009 0.96541 0.98188 1.00706 1.22498 0.98051 0.99269 0.84131 1.48001 1.63973 1.13798 1.07287 1.18333 0.78314 0.85079 0.84345 1.90841 1.55124 1.69450 1.24614 1.20057 1.02191 0.94608 0.95687 1.21768 0.96420 0.97191 0.96538 1.21116 1.00568 0.93663 0.99492 1.21331 0.97756 0.99458 0.93538 1.21146 0.98971 0.96370 0.98106 1.21301 0.96822 0.92296 0.97908 1.22187 0.93233 0.79325 1.06319 0.93324 0.93299 0.92733 0.88576 0.92586 0.90331 0.93689 0.93465 0.88161 0.91532 0.91832 0.91057 0.91189 0.91378 0.88132 0.84154 0.85537 0.85828 0.85468 0.84838 0.92280 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.09 2.02 5.56 -4.04 -0.02 2.00 16 3 N -0.42 -10.34 2.63 -114.81 -0.30 -10.64 16 4 C -0.49 -12.18 6.50 -14.93 -0.10 -12.28 16 5 H 0.13 3.10 3.12 -52.49 -0.16 2.94 16 6 C 0.05 1.25 4.58 -17.47 -0.08 1.17 16 7 N -0.81 -21.06 11.96 55.50 0.66 -20.39 16 8 Si 1.03 22.64 30.06 -169.99 -5.11 17.54 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.45 10.80 6.44 -10.99 -0.07 10.73 16 13 O -0.62 -16.09 15.62 5.54 0.09 -16.00 16 14 C -0.06 -1.23 0.49 -155.54 -0.08 -1.31 16 15 C -0.15 -2.99 7.49 37.16 0.28 -2.71 16 16 C -0.09 -1.54 4.00 -26.69 -0.11 -1.65 16 17 C -0.14 -1.77 5.74 -26.61 -0.15 -1.92 16 18 C 0.08 1.03 4.72 -3.71 -0.02 1.01 16 19 N -0.60 -9.74 2.30 -173.89 -0.40 -10.14 16 20 C 0.55 9.55 7.46 -12.33 -0.09 9.46 16 21 O -0.52 -11.28 16.13 5.32 0.09 -11.19 16 22 C -0.12 -1.67 5.48 -104.97 -0.57 -2.24 16 23 C -0.10 -1.07 7.41 -39.19 -0.29 -1.36 16 24 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 25 C -0.10 -0.86 10.04 -39.49 -0.40 -1.26 16 26 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 27 C -0.06 -0.80 9.60 -39.18 -0.38 -1.18 16 28 C 0.11 2.18 4.75 -3.71 -0.02 2.16 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.10 2.33 4.51 -51.93 -0.23 2.10 16 33 H 0.06 1.33 7.51 -51.93 -0.39 0.94 16 34 H 0.28 7.44 7.57 -40.82 -0.31 7.13 16 35 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 36 H 0.05 0.84 6.19 -51.93 -0.32 0.52 16 37 H 0.10 2.19 4.74 -51.93 -0.25 1.95 16 38 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.06 1.12 8.11 -51.92 -0.42 0.70 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.94 6.50 -51.93 -0.34 0.60 16 42 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 43 H 0.10 1.04 4.04 -51.93 -0.21 0.83 16 44 H 0.14 1.31 5.37 -52.48 -0.28 1.03 16 45 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 48 H 0.13 1.73 7.92 -52.49 -0.42 1.31 16 49 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.14 3.10 3.73 -51.93 -0.19 2.91 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -30.30 378.99 -8.73 -39.03 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.96 Total: 11.43 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.51 Total: -5.33 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.04 Total: -41.18 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.17 Total: -27.20 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.11 Total: 17.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.30 -8.73 -39.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266067151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.601 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds