Wall clock time and date at job start Wed Apr 1 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47026 * 2 1 4 4 C 1.37098 * 120.00338 * 265.47635 * 3 2 1 5 5 H 1.07997 * 120.00306 * 178.15503 * 4 3 2 6 6 C 1.38954 * 119.99570 * 358.15335 * 4 3 2 7 7 N 1.31411 * 120.00023 * 308.10531 * 6 4 3 8 8 Si 1.86795 * 119.99845 * 128.10999 * 6 4 3 9 9 H 1.48496 * 109.47212 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.46957 * 299.99682 * 8 6 4 11 11 H 1.48504 * 109.47460 * 59.99666 * 8 6 4 12 12 C 1.34777 * 120.00067 * 85.48093 * 3 2 1 13 13 O 1.21296 * 120.00037 * 4.03635 * 12 3 2 14 14 C 1.50696 * 120.00322 * 184.03506 * 12 3 2 15 15 C 1.53004 * 109.49565 * 57.51847 * 14 12 3 16 16 C 1.53040 * 109.50085 * 177.61288 * 14 12 3 17 17 C 1.53034 * 109.54070 * 181.31829 * 16 14 12 18 18 C 1.53197 * 109.31301 * 298.63640 * 17 16 14 19 19 N 1.46924 * 108.77256 * 54.63409 * 18 17 16 20 20 C 1.34780 * 120.62848 * 126.41071 * 19 18 17 21 21 O 1.21552 * 120.00167 * 185.29695 * 20 19 18 22 22 C 1.47847 * 120.00026 * 5.30564 * 20 19 18 23 23 C 1.39571 * 120.14772 * 29.55395 * 22 20 19 24 24 C 1.37961 * 119.85562 * 179.74898 * 23 22 20 25 25 C 1.38354 * 120.13986 * 0.53580 * 24 23 22 26 26 C 1.38362 * 120.29927 * 359.73965 * 25 24 23 27 27 C 1.37960 * 120.13902 * 359.97438 * 26 25 24 28 28 C 1.46925 * 118.74308 * 306.39047 * 19 18 17 29 29 H 1.09002 * 109.46910 * 184.97646 * 1 2 3 30 30 H 1.09002 * 109.47022 * 304.98142 * 1 2 3 31 31 H 1.08997 * 109.46998 * 64.97955 * 1 2 3 32 32 H 1.09004 * 109.47054 * 239.99889 * 2 1 3 33 33 H 1.09004 * 109.46789 * 120.00522 * 2 1 3 34 34 H 0.96998 * 120.00334 * 354.12583 * 7 6 4 35 35 H 1.09008 * 109.46689 * 66.77625 * 15 14 12 36 36 H 1.09003 * 109.47156 * 186.76827 * 15 14 12 37 37 H 1.08995 * 109.47336 * 306.77994 * 15 14 12 38 38 H 1.09003 * 109.46210 * 301.34459 * 16 14 12 39 39 H 1.09008 * 109.45577 * 61.29900 * 16 14 12 40 40 H 1.08996 * 109.49806 * 178.68817 * 17 16 14 41 41 H 1.08999 * 109.52473 * 58.60725 * 17 16 14 42 42 H 1.08991 * 109.58876 * 294.84715 * 18 17 16 43 43 H 1.08999 * 109.70244 * 174.48753 * 18 17 16 44 44 H 1.08005 * 120.06835 * 0.02562 * 23 22 20 45 45 H 1.07994 * 119.92648 * 180.27832 * 24 23 22 46 46 H 1.08008 * 119.85193 * 179.72144 * 25 24 23 47 47 H 1.07992 * 119.93064 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.06926 * 179.97438 * 27 26 25 49 49 H 1.08995 * 109.58690 * 293.82551 * 28 19 18 50 50 H 1.08999 * 109.70623 * 173.46549 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3351 1.9963 -1.1836 5 1 2.6667 3.0241 -1.1862 6 6 2.2296 1.2973 -2.3798 7 7 2.8101 0.1254 -2.5094 8 14 1.2628 2.0233 -3.8037 9 1 1.3028 1.0885 -4.9568 10 1 -0.1466 2.2366 -3.3873 11 1 1.8641 3.3223 -4.1991 12 6 2.1563 2.0472 1.1636 13 8 1.9464 1.4805 2.2153 14 6 2.5712 3.4959 1.1580 15 6 1.5748 4.3093 0.3294 16 6 2.5953 4.0259 2.5935 17 6 2.9847 5.5059 2.5862 18 6 4.3882 5.6576 1.9912 19 7 4.4118 5.0208 0.6673 20 6 4.8313 5.7043 -0.4160 21 8 4.7559 5.2001 -1.5195 22 6 5.3832 7.0672 -0.2622 23 6 6.0395 7.4289 0.9153 24 6 6.5568 8.7007 1.0504 25 6 6.4164 9.6202 0.0262 26 6 5.7619 9.2700 -1.1415 27 6 5.2452 7.9996 -1.2916 28 6 3.9699 3.6248 0.5467 29 1 -0.3633 -1.0238 0.0891 30 1 -0.3633 0.5892 0.8420 31 1 -0.3633 0.4346 -0.9312 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3819 -0.2134 -1.8030 35 1 0.6067 4.3172 0.8304 36 1 1.9382 5.3316 0.2250 37 1 1.4695 3.8585 -0.6574 38 1 1.6070 3.9126 3.0391 39 1 3.3232 3.4617 3.1767 40 1 2.9790 5.8886 3.6068 41 1 2.2711 6.0673 1.9831 42 1 5.1156 5.1733 2.6425 43 1 4.6331 6.7151 1.8924 44 1 6.1460 6.7132 1.7172 45 1 7.0688 8.9804 1.9592 46 1 6.8193 10.6160 0.1387 47 1 5.6561 9.9922 -1.9373 48 1 4.7342 7.7276 -2.2033 49 1 4.6632 2.9747 1.0804 50 1 3.9369 3.3392 -0.5047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266067151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:46 Heat of formation + Delta-G solvation = -15.666165 kcal Electronic energy + Delta-G solvation = -32275.396211 eV Core-core repulsion = 28268.607485 eV Total energy + Delta-G solvation = -4006.788726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14811 -40.88594 -39.30449 -38.39393 -37.13868 -35.02137 -33.74602 -33.09925 -32.14646 -31.91365 -31.08851 -28.11822 -27.04124 -26.57774 -25.24419 -24.13625 -23.78068 -23.20474 -21.71054 -21.09455 -20.02514 -19.33369 -18.18889 -17.70944 -17.55868 -17.01234 -16.77653 -16.31546 -16.02415 -15.73345 -15.64858 -15.38333 -15.26352 -14.89510 -14.81881 -14.68363 -14.56908 -14.37842 -14.10464 -13.72243 -13.61591 -13.53385 -13.13548 -13.07634 -12.98019 -12.83725 -12.62098 -12.45369 -12.25757 -12.18869 -12.07499 -12.00022 -11.91543 -11.67930 -11.61978 -11.15995 -10.94856 -10.72106 -10.24774 -9.95955 -9.87031 -9.81935 -9.61410 -8.86620 -5.73237 -0.05429 0.42236 1.39746 1.53798 1.72125 1.76764 1.88117 2.06115 2.35171 2.69735 2.85889 2.99395 3.44524 3.78507 3.80935 3.92208 3.95507 4.02151 4.08178 4.12311 4.16010 4.26105 4.34333 4.44805 4.50331 4.51547 4.54026 4.59556 4.62207 4.71191 4.76343 4.81076 4.86541 4.87489 4.91451 4.98594 5.03580 5.06981 5.09133 5.22723 5.26701 5.29352 5.37414 5.44246 5.50159 5.52020 5.53957 5.61063 5.98910 6.04799 6.27084 6.39753 7.00494 7.09959 7.58950 7.95044 8.26058 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.004072 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.401681 B = 6873.851898 C = 8317.920030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 N -0.433 5.433 4 C -0.491 4.491 5 H 0.121 0.879 6 C 0.016 3.984 7 N -0.830 5.830 8 Si 1.070 2.930 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.277 1.277 12 C 0.441 3.559 13 O -0.643 6.643 14 C -0.059 4.059 15 C -0.142 4.142 16 C -0.086 4.086 17 C -0.127 4.127 18 C 0.078 3.922 19 N -0.595 5.595 20 C 0.546 3.454 21 O -0.583 6.583 22 C -0.147 4.147 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.091 4.091 26 C -0.127 4.127 27 C -0.086 4.086 28 C 0.122 3.878 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.273 0.727 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.154 0.846 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.149 0.851 48 H 0.112 0.888 49 H 0.048 0.952 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 19.796 7.692 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 N -0.148 5.148 4 C -0.614 4.614 5 H 0.138 0.862 6 C -0.196 4.196 7 N -0.460 5.460 8 Si 0.892 3.108 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.202 1.202 12 C 0.232 3.768 13 O -0.533 6.533 14 C -0.062 4.062 15 C -0.199 4.199 16 C -0.124 4.124 17 C -0.165 4.165 18 C -0.042 4.042 19 N -0.326 5.326 20 C 0.336 3.664 21 O -0.463 6.463 22 C -0.150 4.150 23 C -0.120 4.120 24 C -0.139 4.139 25 C -0.109 4.109 26 C -0.145 4.145 27 C -0.105 4.105 28 C -0.001 4.001 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.148 0.852 44 H 0.172 0.828 45 H 0.181 0.819 46 H 0.178 0.822 47 H 0.167 0.833 48 H 0.130 0.870 49 H 0.066 0.934 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.902 18.861 6.072 20.411 hybrid contribution 0.396 -0.788 1.148 1.447 sum 5.298 18.072 7.220 20.169 Atomic orbital electron populations 1.21814 0.95132 1.01928 1.00796 1.21715 0.95673 0.84983 1.01893 1.43896 1.53763 1.11195 1.05991 1.20641 1.55872 1.00531 0.84371 0.86160 1.26980 0.95897 0.94753 1.01948 1.70905 1.19958 1.22651 1.32496 0.83565 0.77139 0.76215 0.73836 1.20424 1.19457 1.20211 1.20344 0.83958 0.89825 0.82687 1.90462 1.60074 1.70828 1.31967 1.20606 0.95642 0.91918 0.98072 1.21984 0.97295 0.99128 1.01543 1.21278 1.01725 0.96521 0.92890 1.22001 0.96533 0.94805 1.03134 1.22881 0.98406 1.00904 0.82040 1.48033 1.63256 1.12332 1.09002 1.19068 0.77390 0.86395 0.83514 1.90798 1.57640 1.71046 1.26866 1.19829 1.04785 0.92515 0.97901 1.21916 0.95988 0.98591 0.95532 1.21549 0.99212 0.92354 1.00765 1.21811 0.95797 1.00957 0.92343 1.21420 0.98233 0.95269 0.99546 1.21312 0.98161 0.93823 0.97244 1.21702 0.93139 0.81666 1.03624 0.90380 0.94143 0.93216 0.89429 0.93590 0.91563 0.93125 0.91923 0.90868 0.92469 0.92588 0.87107 0.91359 0.89389 0.85189 0.82826 0.81909 0.82218 0.83282 0.86968 0.93382 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 10.21 71.98 0.73 -5.17 16 2 C 0.08 3.94 5.56 86.38 0.48 4.42 16 3 N -0.43 -22.05 2.63 -635.53 -1.67 -23.73 16 4 C -0.49 -25.48 6.50 84.04 0.55 -24.94 16 5 H 0.12 6.39 3.12 -2.91 -0.01 6.38 16 6 C 0.02 0.83 4.58 84.93 0.39 1.22 16 7 N -0.83 -44.63 11.96 21.66 0.26 -44.37 16 8 Si 1.07 47.10 30.06 68.60 2.06 49.16 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.44 21.82 6.44 87.66 0.56 22.39 16 13 O -0.64 -34.49 15.62 -3.08 -0.05 -34.54 16 14 C -0.06 -2.38 0.49 -52.85 -0.03 -2.40 16 15 C -0.14 -5.62 7.49 71.98 0.54 -5.08 16 16 C -0.09 -2.86 4.00 30.62 0.12 -2.73 16 17 C -0.13 -2.92 5.74 30.67 0.18 -2.74 16 18 C 0.08 1.72 4.72 86.36 0.41 2.13 16 19 N -0.60 -19.41 2.30 -822.33 -1.90 -21.31 16 20 C 0.55 19.43 7.46 86.79 0.65 20.08 16 21 O -0.58 -26.84 16.13 -3.88 -0.06 -26.90 16 22 C -0.15 -3.89 5.48 -20.09 -0.11 -4.00 16 23 C -0.10 -1.83 7.41 22.53 0.17 -1.67 16 24 C -0.12 -1.47 10.03 22.23 0.22 -1.24 16 25 C -0.09 -1.08 10.04 22.33 0.22 -0.85 16 26 C -0.13 -2.08 10.03 22.23 0.22 -1.86 16 27 C -0.09 -2.12 9.60 22.53 0.22 -1.90 16 28 C 0.12 5.00 4.75 86.36 0.41 5.41 16 29 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 4.44 4.51 -2.38 -0.01 4.43 16 33 H 0.05 2.28 7.51 -2.38 -0.02 2.26 16 34 H 0.27 15.05 7.57 -92.71 -0.70 14.35 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.06 2.24 6.19 -2.39 -0.01 2.22 16 37 H 0.07 3.32 4.74 -2.39 -0.01 3.31 16 38 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 39 H 0.06 1.93 8.11 -2.38 -0.02 1.91 16 40 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.63 6.50 -2.39 -0.02 1.62 16 42 H 0.09 1.65 8.02 -2.39 -0.02 1.63 16 43 H 0.13 2.19 4.04 -2.39 -0.01 2.18 16 44 H 0.15 2.27 5.37 -2.91 -0.02 2.25 16 45 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 46 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 47 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.11 3.12 7.92 -2.91 -0.02 3.09 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.10 4.79 3.73 -2.39 -0.01 4.78 16 Total: -1.00 -71.62 378.99 5.62 -66.00 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 1.04 Total: 34.60 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.94 Total: 1.07 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -3.31 Total: -89.40 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -0.11 Total: -61.44 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.06 Total: 49.16 kcal Total: -71.62 5.62 -66.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266067151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.334 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds