Wall clock time and date at job start Wed Apr 1 2020 03:35:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.47085 * 111.00338 * 2 1
4 4 C 1.52752 * 108.74075 * 188.17064 * 3 2 1
5 5 C 1.53099 * 110.36519 * 298.95621 * 4 3 2
6 6 H 1.08999 * 112.43168 * 286.30735 * 5 4 3
7 7 C 1.55829 * 107.44526 * 161.66430 * 5 4 3
8 8 C 1.54463 * 102.81671 * 280.86396 * 7 5 4
9 9 N 1.47339 * 107.16653 * 337.67688 * 8 7 5
10 10 C 1.34774 * 125.94619 * 178.59879 * 9 8 7
11 11 O 1.21287 * 120.00008 * 179.68597 * 10 9 8
12 12 C 1.50704 * 120.00294 * 359.69053 * 10 9 8
13 13 C 1.50703 * 109.47057 * 179.97438 * 12 10 9
14 14 C 1.38294 * 119.92983 * 90.00128 * 13 12 10
15 15 C 1.38096 * 120.06969 * 179.97438 * 14 13 12
16 16 C 1.38887 * 119.92909 * 359.97438 * 15 14 13
17 17 O 1.35746 * 120.06604 * 180.02562 * 16 15 14
18 18 C 1.34833 * 117.00531 * 5.54199 * 17 16 15
19 19 H 1.07995 * 119.99437 * 354.94399 * 18 17 16
20 20 C 1.38650 * 120.00178 * 174.66237 * 18 17 16
21 21 N 1.31555 * 119.99956 * 0.28234 * 20 18 17
22 22 Si 1.86799 * 120.00030 * 180.27275 * 20 18 17
23 23 H 1.48501 * 109.47176 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.47053 * 120.00131 * 22 20 18
25 25 H 1.48498 * 109.47480 * 240.00467 * 22 20 18
26 26 C 1.38871 * 119.86145 * 0.28182 * 16 15 14
27 27 C 1.38100 * 119.92983 * 359.42253 * 26 16 15
28 28 C 1.46607 * 108.10300 * 358.33513 * 9 8 7
29 29 H 1.08997 * 108.98329 * 268.66190 * 28 9 8
30 30 C 1.45378 * 111.17135 * 123.31347 * 2 1 3
31 31 H 1.09000 * 109.46988 * 63.95088 * 1 2 3
32 32 H 1.08994 * 109.47672 * 183.95050 * 1 2 3
33 33 H 1.09005 * 109.47184 * 303.95730 * 1 2 3
34 34 H 1.09003 * 109.59389 * 68.39162 * 3 2 1
35 35 H 1.09006 * 109.71590 * 308.02369 * 3 2 1
36 36 H 1.08999 * 109.32264 * 178.67633 * 4 3 2
37 37 H 1.09000 * 109.17041 * 59.14185 * 4 3 2
38 38 H 1.09004 * 110.76199 * 39.36998 * 7 5 4
39 39 H 1.08994 * 110.75821 * 162.74539 * 7 5 4
40 40 H 1.08994 * 110.01074 * 218.22889 * 8 7 5
41 41 H 1.09008 * 109.79793 * 96.99944 * 8 7 5
42 42 H 1.08999 * 109.47003 * 59.99937 * 12 10 9
43 43 H 1.08993 * 109.46977 * 299.99956 * 12 10 9
44 44 H 1.08006 * 119.96631 * 0.02562 * 14 13 12
45 45 H 1.07998 * 120.03684 * 179.97438 * 15 14 13
46 46 H 0.97000 * 120.00014 * 179.97438 * 21 20 18
47 47 H 1.07995 * 120.03647 * 179.71990 * 26 16 15
48 48 H 1.07999 * 119.96606 * 180.27624 * 27 26 16
49 49 H 1.09002 * 109.46982 * 54.89211 * 30 2 1
50 50 H 1.08993 * 108.02024 * 296.23629 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9962 1.3731 0.0000
4 6 3.5088 1.3181 -0.2056
5 6 4.1735 0.5414 0.9341
6 1 4.1989 1.1086 1.8645
7 6 5.5920 0.1190 0.4465
8 6 5.2970 -1.1083 -0.4437
9 7 3.9923 -1.6478 -0.0221
10 6 3.3598 -2.7054 -0.5678
11 8 2.2864 -3.0621 -0.1301
12 6 3.9863 -3.4449 -1.7219
13 6 3.0844 -4.5767 -2.1422
14 6 2.1143 -4.3650 -3.1048
15 6 1.2867 -5.4002 -3.4925
16 6 1.4296 -6.6552 -2.9150
17 8 0.6178 -7.6749 -3.2944
18 6 -0.2286 -7.4359 -4.3163
19 1 -0.2976 -6.4448 -4.7396
20 6 -1.0062 -8.4638 -4.8274
21 7 -0.9221 -9.6711 -4.3116
22 14 -2.1733 -8.1343 -6.2482
23 1 -2.0805 -6.7061 -6.6440
24 1 -1.8028 -8.9924 -7.4023
25 1 -3.5639 -8.4427 -5.8283
26 6 2.4011 -6.8632 -1.9447
27 6 3.2297 -5.8255 -1.5657
28 6 3.5049 -0.8376 1.0983
29 1 3.8419 -1.2859 2.0330
30 6 1.9940 -0.7446 1.1329
31 1 -0.3633 0.4513 -0.9233
32 1 -0.3634 -1.0251 0.0708
33 1 -0.3634 0.5741 0.8524
34 1 1.7741 1.8499 0.9547
35 1 1.5379 1.9430 -0.8084
36 1 3.9065 2.3326 -0.2307
37 1 3.7235 0.8232 -1.1527
38 1 6.0548 0.9175 -0.1334
39 1 6.2224 -0.1626 1.2899
40 1 6.0718 -1.8627 -0.3075
41 1 5.2521 -0.8038 -1.4894
42 1 4.9525 -3.8455 -1.4151
43 1 4.1257 -2.7609 -2.5589
44 1 2.0045 -3.3892 -3.5545
45 1 0.5290 -5.2342 -4.2441
46 1 -1.4663 -10.3901 -4.6689
47 1 2.5117 -7.8367 -1.4905
48 1 3.9884 -5.9878 -0.8144
49 1 1.5741 -1.7504 1.1327
50 1 1.6885 -0.2312 2.0445
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000272581593.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:35:00
Heat of formation + Delta-G solvation = -22.008925 kcal
Electronic energy + Delta-G solvation = -30629.516308 eV
Core-core repulsion = 26622.452539 eV
Total energy + Delta-G solvation = -4007.063769 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.95866 -39.08357 -38.19140 -36.71606 -36.27111 -33.00472 -32.40107 -31.54108
-30.46303 -30.05080 -29.83477 -26.53798 -26.28819 -25.07023 -23.58545 -23.34592
-21.92064 -21.86168 -20.89170 -19.78277 -18.55012 -17.88490 -16.89550 -16.80955
-16.54571 -15.68960 -15.49986 -15.13844 -14.75599 -14.57239 -14.35094 -14.31448
-14.01624 -13.77765 -13.52058 -13.37778 -13.28157 -12.95945 -12.81871 -12.60135
-12.52031 -12.36761 -12.23704 -12.02452 -11.89203 -11.75062 -11.59990 -11.39541
-11.19412 -11.07870 -10.76541 -10.67154 -10.61460 -10.56844 -10.50771 -10.35486
-9.24136 -9.22674 -8.74649 -8.55139 -8.35696 -8.03737 -7.05540 -6.37412
-3.95636 2.35266 2.37477 2.95193 3.08032 3.18382 3.18854 3.24353
3.81325 4.03372 4.10272 4.24853 4.39555 4.63867 4.81029 4.85034
4.93656 5.02558 5.04894 5.14122 5.18674 5.24338 5.24914 5.31811
5.34841 5.39353 5.42278 5.43218 5.47913 5.50011 5.59968 5.60884
5.70663 5.77601 5.79430 5.86237 5.90633 5.95355 5.97955 6.02617
6.32066 6.44537 6.53044 6.81300 6.98830 7.02574 7.06135 7.15659
7.34752 7.49170 7.54412 7.65766 7.95098 8.08605 8.50991 9.08732
9.80707 10.81097
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.017222 B = 0.002480 C = 0.002296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1625.423641 B =11289.743961 C =12189.668241
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.528 5.528
3 C 0.051 3.949
4 C -0.107 4.107
5 C -0.101 4.101
6 H 0.093 0.907
7 C -0.129 4.129
8 C 0.103 3.897
9 N -0.612 5.612
10 C 0.536 3.464
11 O -0.513 6.513
12 C -0.074 4.074
13 C -0.165 4.165
14 C -0.054 4.054
15 C -0.232 4.232
16 C 0.156 3.844
17 O -0.180 6.180
18 C -0.389 4.389
19 H 0.092 0.908
20 C 0.038 3.962
21 N -0.865 5.865
22 Si 0.940 3.060
23 H -0.267 1.267
24 H -0.276 1.276
25 H -0.276 1.276
26 C -0.192 4.192
27 C -0.060 4.060
28 C 0.150 3.850
29 H 0.066 0.934
30 C 0.040 3.960
31 H 0.066 0.934
32 H 0.073 0.927
33 H 0.020 0.980
34 H 0.030 0.970
35 H 0.073 0.927
36 H 0.065 0.935
37 H 0.074 0.926
38 H 0.082 0.918
39 H 0.074 0.926
40 H 0.068 0.932
41 H 0.067 0.933
42 H 0.087 0.913
43 H 0.088 0.912
44 H 0.103 0.897
45 H 0.125 0.875
46 H 0.268 0.732
47 H 0.115 0.885
48 H 0.107 0.893
49 H 0.114 0.886
50 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.035 23.823 9.457 28.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 N -0.252 5.252
3 C -0.077 4.077
4 C -0.145 4.145
5 C -0.120 4.120
6 H 0.111 0.889
7 C -0.166 4.166
8 C -0.021 4.021
9 N -0.349 5.349
10 C 0.326 3.674
11 O -0.387 6.387
12 C -0.114 4.114
13 C -0.167 4.167
14 C -0.072 4.072
15 C -0.251 4.251
16 C 0.103 3.897
17 O -0.084 6.084
18 C -0.465 4.465
19 H 0.109 0.891
20 C -0.166 4.166
21 N -0.500 5.500
22 Si 0.765 3.235
23 H -0.191 1.191
24 H -0.202 1.202
25 H -0.202 1.202
26 C -0.211 4.211
27 C -0.079 4.079
28 C 0.046 3.954
29 H 0.084 0.916
30 C -0.089 4.089
31 H 0.085 0.915
32 H 0.092 0.908
33 H 0.038 0.962
34 H 0.048 0.952
35 H 0.091 0.909
36 H 0.084 0.916
37 H 0.093 0.907
38 H 0.101 0.899
39 H 0.093 0.907
40 H 0.086 0.914
41 H 0.085 0.915
42 H 0.105 0.895
43 H 0.107 0.893
44 H 0.121 0.879
45 H 0.143 0.857
46 H 0.078 0.922
47 H 0.133 0.867
48 H 0.125 0.875
49 H 0.132 0.868
50 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges 12.404 22.824 9.250 27.574
hybrid contribution -0.815 0.737 0.040 1.100
sum 11.589 23.561 9.291 27.852
Atomic orbital electron populations
1.22314 0.86819 1.02463 1.00184 1.61486 1.07757 1.12579 1.43427
1.22125 0.95508 0.89967 1.00055 1.21536 0.94405 0.99616 0.98944
1.22453 0.94863 0.95494 0.99196 0.88887 1.22862 0.96747 0.97274
0.99751 1.22044 0.85505 0.95575 0.98938 1.48248 1.20781 1.30646
1.35251 1.20517 0.84750 0.78474 0.83672 1.90624 1.20883 1.65341
1.61885 1.20373 0.98659 0.96367 0.96025 1.18643 1.01634 0.93608
1.02783 1.20496 0.93855 0.97179 0.95690 1.21098 1.04336 0.93394
1.06290 1.19376 0.89518 0.88110 0.92690 1.83975 1.44027 1.33474
1.46928 1.21370 1.17836 0.97234 1.10067 0.89078 1.25274 0.98153
0.94447 0.98729 1.70053 1.38888 1.00700 1.40393 0.85661 0.79337
0.78755 0.79754 1.19111 1.20208 1.20210 1.20135 0.98734 0.99720
1.02542 1.20384 0.97819 0.92106 0.97548 1.21091 0.93961 0.90389
0.89975 0.91641 1.21970 0.94340 1.01775 0.90785 0.91529 0.90840
0.96151 0.95192 0.90879 0.91591 0.90706 0.89929 0.90690 0.91398
0.91451 0.89455 0.89344 0.87875 0.85691 0.92186 0.86660 0.87520
0.86796 0.95565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 9.61 60.06 0.58 0.92 16
2 N -0.53 -6.27 4.94 -245.22 -1.21 -7.48 16
3 C 0.05 0.46 5.47 -3.85 -0.02 0.44 16
4 C -0.11 -0.81 5.14 -26.81 -0.14 -0.94 16
5 C -0.10 -0.71 3.66 -88.47 -0.32 -1.04 16
6 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16
7 C -0.13 -0.71 6.33 -24.45 -0.15 -0.87 16
8 C 0.10 0.77 5.80 -2.82 -0.02 0.75 16
9 N -0.61 -6.82 3.17 -164.70 -0.52 -7.34 16
10 C 0.54 7.90 7.68 -10.98 -0.08 7.82 16
11 O -0.51 -9.67 13.56 5.55 0.08 -9.59 16
12 C -0.07 -1.02 5.04 -29.03 -0.15 -1.16 16
13 C -0.17 -3.01 4.38 -104.58 -0.46 -3.47 16
14 C -0.05 -1.07 9.69 -39.61 -0.38 -1.45 16
15 C -0.23 -5.37 9.17 -39.39 -0.36 -5.73 16
16 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16
17 O -0.18 -5.36 9.76 0.05 0.00 -5.36 16
18 C -0.39 -11.25 9.49 30.88 0.29 -10.96 16
19 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16
20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
21 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16
22 Si 0.94 21.15 29.55 -169.99 -5.02 16.12 16
23 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16
24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
26 C -0.19 -4.33 9.99 -39.40 -0.39 -4.72 16
27 C -0.06 -1.16 9.69 -39.61 -0.38 -1.54 16
28 C 0.15 1.53 3.03 -68.09 -0.21 1.32 16
29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
30 C 0.04 0.48 4.26 -5.45 -0.02 0.45 16
31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16
33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16
34 H 0.03 0.25 8.09 -51.93 -0.42 -0.17 16
35 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16
36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
37 H 0.07 0.67 7.05 -51.93 -0.37 0.30 16
38 H 0.08 0.35 8.00 -51.93 -0.42 -0.07 16
39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
41 H 0.07 0.48 7.89 -51.92 -0.41 0.07 16
42 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16
43 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16
44 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16
45 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16
46 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16
47 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16
48 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16
49 H 0.11 1.76 5.52 -51.93 -0.29 1.47 16
50 H 0.03 0.29 8.09 -51.93 -0.42 -0.14 16
LS Contribution 393.80 15.07 5.93 5.93
Total: -1.00 -34.35 393.80 -10.50 -44.85
By element:
Atomic # 1 Polarization: 11.58 SS G_CDS: -7.93 Total: 3.65 kcal
Atomic # 6 Polarization: -12.90 SS G_CDS: -2.58 Total: -15.48 kcal
Atomic # 7 Polarization: -39.15 SS G_CDS: -0.97 Total: -40.12 kcal
Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.96 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -34.35 -10.50 -44.85 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000272581593.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.841 kcal
(2) G-P(sol) polarization free energy of solvation -34.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.514 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.009 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds