Wall clock time and date at job start Wed Apr 1 2020 03:34:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.47085 * 111.00338 * 2 1
4 4 C 1.52752 * 108.74075 * 188.17064 * 3 2 1
5 5 C 1.53099 * 110.36519 * 298.95621 * 4 3 2
6 6 H 1.08999 * 112.43168 * 286.30735 * 5 4 3
7 7 C 1.55829 * 107.44526 * 161.66430 * 5 4 3
8 8 C 1.54463 * 102.81671 * 280.86396 * 7 5 4
9 9 N 1.47339 * 107.16653 * 337.67688 * 8 7 5
10 10 C 1.34774 * 125.94619 * 178.59879 * 9 8 7
11 11 O 1.21287 * 120.00008 * 179.68597 * 10 9 8
12 12 C 1.50704 * 120.00294 * 359.69053 * 10 9 8
13 13 C 1.50703 * 109.47057 * 179.97438 * 12 10 9
14 14 C 1.38294 * 119.92983 * 90.00128 * 13 12 10
15 15 C 1.38096 * 120.06969 * 179.97438 * 14 13 12
16 16 C 1.38887 * 119.92909 * 359.97438 * 15 14 13
17 17 O 1.35746 * 120.06604 * 180.02562 * 16 15 14
18 18 C 1.34833 * 117.00531 * 5.54199 * 17 16 15
19 19 H 1.07995 * 119.99437 * 354.94399 * 18 17 16
20 20 C 1.38650 * 120.00178 * 174.66237 * 18 17 16
21 21 N 1.31555 * 119.99956 * 0.28234 * 20 18 17
22 22 Si 1.86799 * 120.00030 * 180.27275 * 20 18 17
23 23 H 1.48501 * 109.47176 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.47053 * 120.00131 * 22 20 18
25 25 H 1.48498 * 109.47480 * 240.00467 * 22 20 18
26 26 C 1.38871 * 119.86145 * 0.28182 * 16 15 14
27 27 C 1.38100 * 119.92983 * 359.42253 * 26 16 15
28 28 C 1.46607 * 108.10300 * 358.33513 * 9 8 7
29 29 H 1.08997 * 108.98329 * 268.66190 * 28 9 8
30 30 C 1.45378 * 111.17135 * 123.31347 * 2 1 3
31 31 H 1.09000 * 109.46988 * 63.95088 * 1 2 3
32 32 H 1.08994 * 109.47672 * 183.95050 * 1 2 3
33 33 H 1.09005 * 109.47184 * 303.95730 * 1 2 3
34 34 H 1.09003 * 109.59389 * 68.39162 * 3 2 1
35 35 H 1.09006 * 109.71590 * 308.02369 * 3 2 1
36 36 H 1.08999 * 109.32264 * 178.67633 * 4 3 2
37 37 H 1.09000 * 109.17041 * 59.14185 * 4 3 2
38 38 H 1.09004 * 110.76199 * 39.36998 * 7 5 4
39 39 H 1.08994 * 110.75821 * 162.74539 * 7 5 4
40 40 H 1.08994 * 110.01074 * 218.22889 * 8 7 5
41 41 H 1.09008 * 109.79793 * 96.99944 * 8 7 5
42 42 H 1.08999 * 109.47003 * 59.99937 * 12 10 9
43 43 H 1.08993 * 109.46977 * 299.99956 * 12 10 9
44 44 H 1.08006 * 119.96631 * 0.02562 * 14 13 12
45 45 H 1.07998 * 120.03684 * 179.97438 * 15 14 13
46 46 H 0.97000 * 120.00014 * 179.97438 * 21 20 18
47 47 H 1.07995 * 120.03647 * 179.71990 * 26 16 15
48 48 H 1.07999 * 119.96606 * 180.27624 * 27 26 16
49 49 H 1.09002 * 109.46982 * 54.89211 * 30 2 1
50 50 H 1.08993 * 108.02024 * 296.23629 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9962 1.3731 0.0000
4 6 3.5088 1.3181 -0.2056
5 6 4.1735 0.5414 0.9341
6 1 4.1989 1.1086 1.8645
7 6 5.5920 0.1190 0.4465
8 6 5.2970 -1.1083 -0.4437
9 7 3.9923 -1.6478 -0.0221
10 6 3.3598 -2.7054 -0.5678
11 8 2.2864 -3.0621 -0.1301
12 6 3.9863 -3.4449 -1.7219
13 6 3.0844 -4.5767 -2.1422
14 6 2.1143 -4.3650 -3.1048
15 6 1.2867 -5.4002 -3.4925
16 6 1.4296 -6.6552 -2.9150
17 8 0.6178 -7.6749 -3.2944
18 6 -0.2286 -7.4359 -4.3163
19 1 -0.2976 -6.4448 -4.7396
20 6 -1.0062 -8.4638 -4.8274
21 7 -0.9221 -9.6711 -4.3116
22 14 -2.1733 -8.1343 -6.2482
23 1 -2.0805 -6.7061 -6.6440
24 1 -1.8028 -8.9924 -7.4023
25 1 -3.5639 -8.4427 -5.8283
26 6 2.4011 -6.8632 -1.9447
27 6 3.2297 -5.8255 -1.5657
28 6 3.5049 -0.8376 1.0983
29 1 3.8419 -1.2859 2.0330
30 6 1.9940 -0.7446 1.1329
31 1 -0.3633 0.4513 -0.9233
32 1 -0.3634 -1.0251 0.0708
33 1 -0.3634 0.5741 0.8524
34 1 1.7741 1.8499 0.9547
35 1 1.5379 1.9430 -0.8084
36 1 3.9065 2.3326 -0.2307
37 1 3.7235 0.8232 -1.1527
38 1 6.0548 0.9175 -0.1334
39 1 6.2224 -0.1626 1.2899
40 1 6.0718 -1.8627 -0.3075
41 1 5.2521 -0.8038 -1.4894
42 1 4.9525 -3.8455 -1.4151
43 1 4.1257 -2.7609 -2.5589
44 1 2.0045 -3.3892 -3.5545
45 1 0.5290 -5.2342 -4.2441
46 1 -1.4663 -10.3901 -4.6689
47 1 2.5117 -7.8367 -1.4905
48 1 3.9884 -5.9878 -0.8144
49 1 1.5741 -1.7504 1.1327
50 1 1.6885 -0.2312 2.0445
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000272581593.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:59
Heat of formation + Delta-G solvation = -44.968700 kcal
Electronic energy + Delta-G solvation = -30630.511919 eV
Core-core repulsion = 26622.452539 eV
Total energy + Delta-G solvation = -4008.059380 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.78851 -40.77359 -39.45277 -38.08592 -37.44252 -34.39596 -33.81543 -32.90855
-31.77517 -31.32553 -30.68198 -28.11908 -27.09446 -26.95868 -24.41584 -24.14320
-23.62317 -22.68127 -22.29009 -20.72107 -19.83360 -19.47773 -18.80908 -17.74238
-17.36344 -16.68368 -16.52583 -16.30255 -16.22907 -15.96750 -15.75643 -15.49721
-15.35055 -14.99941 -14.92496 -14.76800 -14.37699 -14.09537 -14.05546 -13.84559
-13.62880 -13.52213 -13.20388 -12.99127 -12.90957 -12.86006 -12.72456 -12.50176
-12.42755 -12.35053 -12.25295 -12.24865 -12.09402 -11.60113 -11.41344 -11.17396
-11.13375 -10.80897 -10.33400 -9.75239 -9.42517 -9.21934 -8.88012 -8.47292
-6.15308 0.62557 0.69066 1.33569 1.42270 1.52539 1.88145 2.16745
2.17676 2.84299 3.01556 3.17161 3.47353 3.52512 3.68712 3.81218
3.91602 4.05575 4.09836 4.18799 4.21830 4.27446 4.31644 4.34740
4.43798 4.48921 4.50449 4.56823 4.60734 4.63327 4.66906 4.71084
4.79109 4.82016 4.93643 4.94124 4.96557 5.02519 5.09692 5.14851
5.16041 5.24035 5.29302 5.31522 5.40397 5.57023 5.66383 5.72418
5.80555 6.03480 6.11838 6.23541 6.25841 6.74187 6.97400 7.45918
7.79134 8.76593
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.017222 B = 0.002480 C = 0.002296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1625.423641 B =11289.743961 C =12189.668241
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 N -0.546 5.546
3 C 0.049 3.951
4 C -0.103 4.103
5 C -0.093 4.093
6 H 0.111 0.889
7 C -0.117 4.117
8 C 0.092 3.908
9 N -0.607 5.607
10 C 0.531 3.469
11 O -0.568 6.568
12 C -0.072 4.072
13 C -0.140 4.140
14 C -0.058 4.058
15 C -0.242 4.242
16 C 0.113 3.887
17 O -0.234 6.234
18 C -0.413 4.413
19 H 0.099 0.901
20 C -0.024 4.024
21 N -0.922 5.922
22 Si 1.020 2.980
23 H -0.253 1.253
24 H -0.265 1.265
25 H -0.268 1.268
26 C -0.205 4.205
27 C -0.057 4.057
28 C 0.142 3.858
29 H 0.066 0.934
30 C 0.044 3.956
31 H 0.072 0.928
32 H 0.044 0.956
33 H 0.032 0.968
34 H 0.037 0.963
35 H 0.076 0.924
36 H 0.092 0.908
37 H 0.062 0.938
38 H 0.105 0.895
39 H 0.087 0.913
40 H 0.085 0.915
41 H 0.077 0.923
42 H 0.123 0.877
43 H 0.116 0.884
44 H 0.131 0.869
45 H 0.116 0.884
46 H 0.273 0.727
47 H 0.112 0.888
48 H 0.145 0.855
49 H 0.073 0.927
50 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.144 28.069 9.485 33.741
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 N -0.271 5.271
3 C -0.078 4.078
4 C -0.141 4.141
5 C -0.112 4.112
6 H 0.129 0.871
7 C -0.155 4.155
8 C -0.030 4.030
9 N -0.341 5.341
10 C 0.321 3.679
11 O -0.447 6.447
12 C -0.111 4.111
13 C -0.141 4.141
14 C -0.076 4.076
15 C -0.262 4.262
16 C 0.063 3.937
17 O -0.141 6.141
18 C -0.489 4.489
19 H 0.116 0.884
20 C -0.221 4.221
21 N -0.561 5.561
22 Si 0.839 3.161
23 H -0.176 1.176
24 H -0.190 1.190
25 H -0.193 1.193
26 C -0.225 4.225
27 C -0.075 4.075
28 C 0.038 3.962
29 H 0.084 0.916
30 C -0.085 4.085
31 H 0.091 0.909
32 H 0.063 0.937
33 H 0.051 0.949
34 H 0.055 0.945
35 H 0.094 0.906
36 H 0.111 0.889
37 H 0.081 0.919
38 H 0.123 0.877
39 H 0.106 0.894
40 H 0.103 0.897
41 H 0.096 0.904
42 H 0.141 0.859
43 H 0.134 0.866
44 H 0.149 0.851
45 H 0.133 0.867
46 H 0.082 0.918
47 H 0.130 0.870
48 H 0.163 0.837
49 H 0.091 0.909
50 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 15.599 27.151 9.303 32.666
hybrid contribution -1.549 -0.331 0.240 1.602
sum 14.050 26.820 9.543 31.746
Atomic orbital electron populations
1.22237 0.87348 1.00858 1.01028 1.61494 1.07625 1.14481 1.43503
1.22230 0.96810 0.88241 1.00565 1.21541 0.93068 1.01069 0.98404
1.22467 0.95384 0.93383 1.00004 0.87058 1.22868 0.95728 0.96847
1.00031 1.22401 0.83726 0.96894 0.99992 1.48226 1.21793 1.29370
1.34709 1.20569 0.84245 0.79286 0.83806 1.90648 1.23243 1.67160
1.63649 1.20454 0.98676 0.95116 0.96843 1.19216 1.00257 0.94689
0.99927 1.20850 0.93353 0.97330 0.96055 1.21191 1.05037 0.93615
1.06326 1.19900 0.90712 0.88546 0.94520 1.83934 1.46062 1.35594
1.48502 1.21850 1.18463 0.98026 1.10570 0.88383 1.26610 0.99864
0.93902 1.01746 1.70195 1.40946 1.02043 1.42879 0.84520 0.76533
0.79396 0.75661 1.17602 1.18989 1.19320 1.20419 0.98947 1.00953
1.02135 1.20834 0.97521 0.91499 0.97656 1.21259 0.92779 0.92468
0.89739 0.91563 1.21807 0.95813 0.99659 0.91219 0.90899 0.93730
0.94942 0.94483 0.90580 0.88946 0.91915 0.87706 0.89423 0.89726
0.90450 0.85911 0.86596 0.85079 0.86669 0.91829 0.86969 0.83727
0.90913 0.95046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.77 9.61 127.69 1.23 2.00 16
2 N -0.55 -12.51 4.94 -929.75 -4.59 -17.10 16
3 C 0.05 0.76 5.47 86.19 0.47 1.23 16
4 C -0.10 -1.13 5.14 30.54 0.16 -0.97 16
5 C -0.09 -0.92 3.66 -9.40 -0.03 -0.95 16
6 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
7 C -0.12 -0.66 6.33 32.07 0.20 -0.46 16
8 C 0.09 0.92 5.80 86.72 0.50 1.42 16
9 N -0.61 -11.62 3.17 -793.38 -2.52 -14.13 16
10 C 0.53 14.42 7.68 87.66 0.67 15.09 16
11 O -0.57 -21.39 13.56 -3.05 -0.04 -21.43 16
12 C -0.07 -1.67 5.04 29.10 0.15 -1.52 16
13 C -0.14 -4.80 4.38 -19.83 -0.09 -4.89 16
14 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16
15 C -0.24 -11.65 9.17 22.39 0.21 -11.45 16
16 C 0.11 6.12 6.65 22.58 0.15 6.27 16
17 O -0.23 -14.98 9.76 -22.72 -0.22 -15.20 16
18 C -0.41 -25.40 9.49 67.92 0.64 -24.76 16
19 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16
20 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16
21 N -0.92 -58.75 13.67 21.61 0.30 -58.45 16
22 Si 1.02 44.80 29.55 68.60 2.03 46.83 16
23 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16
24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16
26 C -0.21 -9.58 9.99 22.39 0.22 -9.36 16
27 C -0.06 -2.12 9.69 22.25 0.22 -1.91 16
28 C 0.14 2.54 3.03 44.83 0.14 2.68 16
29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
30 C 0.04 1.03 4.26 86.07 0.37 1.40 16
31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
32 H 0.04 1.26 8.04 -2.39 -0.02 1.24 16
33 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16
34 H 0.04 0.53 8.09 -2.39 -0.02 0.51 16
35 H 0.08 1.13 8.11 -2.38 -0.02 1.11 16
36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
37 H 0.06 0.87 7.05 -2.39 -0.02 0.85 16
38 H 0.10 0.22 8.00 -2.39 -0.02 0.20 16
39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16
40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
41 H 0.08 0.67 7.89 -2.38 -0.02 0.65 16
42 H 0.12 2.07 8.08 -2.39 -0.02 2.05 16
43 H 0.12 2.15 8.08 -2.39 -0.02 2.13 16
44 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16
45 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16
46 H 0.27 15.81 8.31 -92.71 -0.77 15.03 16
47 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16
48 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16
49 H 0.07 2.36 5.52 -2.39 -0.01 2.35 16
50 H 0.03 0.67 8.09 -2.39 -0.02 0.65 16
Total: -1.00 -83.76 393.80 1.76 -82.00
By element:
Atomic # 1 Polarization: 25.74 SS G_CDS: 0.93 Total: 26.66 kcal
Atomic # 6 Polarization: -35.06 SS G_CDS: 5.88 Total: -29.17 kcal
Atomic # 7 Polarization: -82.87 SS G_CDS: -6.81 Total: -89.68 kcal
Atomic # 8 Polarization: -36.37 SS G_CDS: -0.26 Total: -36.63 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal
Total: -83.76 1.76 -82.00 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000272581593.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.031 kcal
(2) G-P(sol) polarization free energy of solvation -83.764 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds