Wall clock time and date at job start Wed Apr 1 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00203 * 2 1 4 4 N 1.46500 * 109.47361 * 124.99976 * 3 2 1 5 5 C 1.46492 * 119.99930 * 269.99979 * 4 3 2 6 6 C 1.50701 * 109.47437 * 270.00163 * 5 4 3 7 7 H 1.08002 * 119.99516 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00315 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00020 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46791 * 90.00339 * 10 8 6 12 12 H 1.48500 * 109.47235 * 210.00162 * 10 8 6 13 13 H 1.48494 * 109.47112 * 330.00452 * 10 8 6 14 14 C 1.34773 * 119.99645 * 90.00238 * 4 3 2 15 15 O 1.21287 * 119.99676 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00453 * 359.97438 * 14 4 3 17 17 C 1.53008 * 109.47192 * 180.02562 * 16 14 4 18 18 N 1.46498 * 109.47060 * 180.02562 * 17 16 14 19 19 C 1.46492 * 120.00259 * 95.12522 * 18 17 16 20 20 C 1.50701 * 109.46870 * 85.00480 * 19 18 17 21 21 C 1.38236 * 120.00490 * 90.00110 * 20 19 18 22 22 C 1.38227 * 120.00748 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99735 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99737 * 0.27962 * 23 22 21 25 25 C 1.38232 * 120.00175 * 359.50893 * 24 23 22 26 26 C 1.34781 * 119.99549 * 275.12706 * 18 17 16 27 27 C 1.50696 * 120.00296 * 5.22396 * 26 18 17 28 28 O 1.21283 * 119.99640 * 185.22659 * 26 18 17 29 29 H 1.08001 * 120.00291 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00215 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00070 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46838 * 4.99272 * 3 2 1 33 33 H 1.09005 * 109.47080 * 244.99940 * 3 2 1 34 34 H 1.09000 * 109.47149 * 30.00227 * 5 4 3 35 35 H 1.09004 * 109.47097 * 150.00202 * 5 4 3 36 36 H 0.97004 * 119.99954 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46901 * 60.00464 * 16 14 4 38 38 H 1.08999 * 109.47041 * 300.00324 * 16 14 4 39 39 H 1.08999 * 109.46930 * 59.99742 * 17 16 14 40 40 H 1.09006 * 109.46839 * 300.00155 * 17 16 14 41 41 H 1.08994 * 109.47469 * 325.00472 * 19 18 17 42 42 H 1.08997 * 109.47210 * 205.00105 * 19 18 17 43 43 H 1.08006 * 119.99345 * 359.97438 * 21 20 19 44 44 H 1.07994 * 120.00698 * 180.02562 * 22 21 20 45 45 H 1.07999 * 120.00525 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99922 * 179.72043 * 24 23 22 47 47 H 1.07999 * 120.00348 * 180.27928 * 25 24 23 48 48 H 1.08998 * 109.46919 * 355.06071 * 27 26 18 49 49 H 1.09005 * 109.47206 * 115.06021 * 27 26 18 50 50 H 1.08998 * 109.47263 * 235.06114 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4247 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8369 1.6366 8 6 2.5193 4.0666 3.6084 9 7 2.7679 5.3571 3.6566 10 14 1.7248 3.2133 5.0679 11 1 2.7809 2.7222 5.9892 12 1 0.8488 4.1736 5.7860 13 1 0.9132 2.0658 4.5887 14 6 4.2496 0.8662 0.9823 15 8 5.0199 0.8888 1.9188 16 6 4.6968 0.3173 -0.3480 17 6 6.1531 -0.1413 -0.2471 18 7 6.5880 -0.6742 -1.5405 19 6 7.2948 0.1902 -2.4887 20 6 8.7656 0.1986 -2.1607 21 6 9.6080 -0.7330 -2.7382 22 6 10.9572 -0.7251 -2.4378 23 6 11.4643 0.2150 -1.5602 24 6 10.6211 1.1433 -0.9787 25 6 9.2726 1.1381 -1.2825 26 6 6.3377 -1.9600 -1.8580 27 6 5.5093 -2.8165 -0.9355 28 8 6.7794 -2.4277 -2.8862 29 1 -0.5401 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0894 33 1 2.6213 1.4025 -0.9314 34 1 1.4888 1.6966 2.5458 35 1 3.0990 1.3604 3.2259 36 1 2.5397 5.8657 4.4505 37 1 4.6119 1.0937 -1.1084 38 1 4.0677 -0.5296 -0.6217 39 1 6.2376 -0.9177 0.5133 40 1 6.7825 0.7055 0.0268 41 1 6.9012 1.2042 -2.4190 42 1 7.1505 -0.1867 -3.5012 43 1 9.2118 -1.4672 -3.4241 44 1 11.6153 -1.4526 -2.8892 45 1 12.5184 0.2210 -1.3251 46 1 11.0166 1.8749 -0.2896 47 1 8.6146 1.8662 -0.8317 48 1 5.2774 -2.2560 -0.0299 49 1 4.5827 -3.0983 -1.4357 50 1 6.0685 -3.7147 -0.6737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292254196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:21 Heat of formation + Delta-G solvation = -19.683740 kcal Electronic energy + Delta-G solvation = -30162.729200 eV Core-core repulsion = 26155.766259 eV Total energy + Delta-G solvation = -4006.962942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41743 -39.30663 -38.89765 -36.20115 -35.72670 -33.32781 -32.76842 -32.18889 -30.99629 -30.66119 -29.77433 -28.26271 -26.10229 -25.63304 -24.32652 -22.64846 -21.94167 -21.63723 -20.12242 -19.19023 -18.51142 -17.35640 -17.01142 -16.93923 -16.74529 -15.96665 -15.78020 -15.52871 -15.14507 -15.02537 -14.92515 -14.53505 -14.15284 -13.78168 -13.51116 -13.46174 -13.41027 -12.96980 -12.94029 -12.61784 -12.50594 -12.40743 -12.34297 -12.15381 -11.81521 -11.80599 -11.66531 -11.43660 -11.29341 -11.09762 -11.03926 -10.98777 -10.57695 -10.20026 -9.99816 -9.62384 -9.35976 -9.24260 -9.01408 -8.95758 -8.76845 -8.63656 -7.84801 -6.13671 -4.12814 1.15521 1.31152 2.28735 2.48299 2.86057 3.19851 3.25554 3.31645 3.33484 3.73282 3.83299 4.35170 4.43080 4.64034 4.74649 4.83945 4.90226 4.94054 4.94842 5.04226 5.04384 5.13309 5.17050 5.21108 5.24404 5.27103 5.36835 5.42051 5.52159 5.52427 5.55951 5.63013 5.68413 5.87402 5.88146 5.94856 5.98664 6.06168 6.32561 6.35757 6.40676 6.50129 6.63002 6.64057 6.77212 6.88050 6.89153 7.22498 7.25302 7.55523 8.02101 8.12754 8.40596 8.81801 8.89998 9.46528 10.99563 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.002927 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.950321 B = 9562.676683 C =11320.265281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.587 5.587 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.511 3.489 15 O -0.540 6.540 16 C -0.162 4.162 17 C 0.123 3.877 18 N -0.606 5.606 19 C 0.152 3.848 20 C -0.106 4.106 21 C -0.097 4.097 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.104 4.104 26 C 0.516 3.484 27 C -0.183 4.183 28 O -0.549 6.549 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -13.316 -12.848 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.012 3.988 4 N -0.317 5.317 5 C 0.097 3.903 6 C -0.568 4.568 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.297 3.703 15 O -0.417 6.417 16 C -0.203 4.203 17 C 0.000 4.000 18 N -0.338 5.338 19 C 0.029 3.971 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.122 4.122 26 C 0.306 3.694 27 C -0.242 4.242 28 O -0.427 6.427 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.543 -13.368 -12.755 19.957 hybrid contribution -0.531 -0.165 0.939 1.091 sum 7.013 -13.533 -11.815 19.285 Atomic orbital electron populations 1.23856 0.95883 1.01896 1.00281 1.23420 0.96408 0.98979 1.00172 1.20620 0.93161 0.95407 0.89651 1.47905 1.10731 1.60076 1.13012 1.19661 0.94931 0.95179 0.80578 1.21303 1.41286 0.91104 1.03090 0.90760 1.24845 0.95241 0.94713 0.98137 1.69893 1.47720 1.06600 1.29278 0.86871 0.79898 0.79689 0.83370 1.19886 1.21066 1.19042 1.20167 0.82215 0.78540 0.89386 1.90696 1.52361 1.56580 1.42095 1.22184 0.97856 1.02677 0.97569 1.21412 0.93987 1.00959 0.83633 1.48121 1.56544 1.10743 1.18431 1.20387 0.87522 0.95161 0.93993 1.20211 0.95854 0.96437 0.98264 1.21177 0.93261 0.97791 0.99353 1.21150 0.95498 0.99037 0.98808 1.21178 0.99684 0.95570 0.97267 1.21169 0.93727 0.99166 1.00017 1.21169 0.95632 0.98417 0.97004 1.20820 0.80008 0.81872 0.86710 1.22056 1.01151 1.00682 1.00285 1.90675 1.52575 1.72348 1.27112 0.88192 0.88697 0.87738 0.89200 0.90414 0.95233 0.94541 0.92527 0.88746 0.89136 0.89239 0.88886 0.89505 0.88818 0.85639 0.86283 0.86288 0.85954 0.85773 0.89684 0.88652 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.32 29.02 0.42 -1.62 16 2 C -0.17 -2.07 9.74 -36.02 -0.35 -2.42 16 3 C 0.14 1.94 5.65 -5.19 -0.03 1.91 16 4 N -0.59 -10.97 2.44 -176.44 -0.43 -11.40 16 5 C 0.22 5.04 4.23 -5.20 -0.02 5.01 16 6 C -0.53 -14.60 9.94 -34.44 -0.34 -14.94 16 7 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 10 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 14 C 0.51 9.08 7.67 -10.99 -0.08 9.00 16 15 O -0.54 -11.82 15.56 5.55 0.09 -11.74 16 16 C -0.16 -1.95 4.31 -27.88 -0.12 -2.07 16 17 C 0.12 1.44 4.31 -4.04 -0.02 1.42 16 18 N -0.61 -6.68 2.47 -175.06 -0.43 -7.11 16 19 C 0.15 1.60 5.53 -5.20 -0.03 1.57 16 20 C -0.11 -1.20 5.46 -104.62 -0.57 -1.78 16 21 C -0.10 -1.11 9.70 -39.59 -0.38 -1.49 16 22 C -0.13 -1.30 10.05 -39.59 -0.40 -1.70 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 25 C -0.10 -1.16 9.48 -39.58 -0.38 -1.53 16 26 C 0.52 6.11 7.73 -10.99 -0.08 6.03 16 27 C -0.18 -1.63 9.48 36.00 0.34 -1.29 16 28 O -0.55 -8.12 16.44 5.56 0.09 -8.03 16 29 H 0.10 1.12 7.84 -52.49 -0.41 0.70 16 30 H 0.09 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.10 1.14 7.83 -52.48 -0.41 0.73 16 32 H 0.09 1.38 7.72 -51.93 -0.40 0.98 16 33 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 38 H 0.09 0.91 6.83 -51.93 -0.35 0.55 16 39 H 0.09 1.06 6.38 -51.93 -0.33 0.72 16 40 H 0.09 1.18 7.53 -51.93 -0.39 0.79 16 41 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 42 H 0.09 1.02 7.29 -51.93 -0.38 0.64 16 43 H 0.13 1.47 7.85 -52.48 -0.41 1.06 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 1.31 7.82 -52.49 -0.41 0.90 16 48 H 0.08 0.73 5.03 -51.93 -0.26 0.47 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 415.12 15.07 6.26 6.26 Total: -1.00 -34.43 415.12 -9.02 -43.45 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.75 Total: 3.60 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.94 Total: -5.17 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.09 Total: -44.73 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.43 -9.02 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.763 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds