Wall clock time and date at job start Wed Apr 1 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 120.00203 * 2 1 4 4 N 1.46500 * 109.47361 * 124.99976 * 3 2 1 5 5 C 1.46492 * 119.99930 * 269.99979 * 4 3 2 6 6 C 1.50701 * 109.47437 * 270.00163 * 5 4 3 7 7 H 1.08002 * 119.99516 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00315 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99855 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00020 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.46791 * 90.00339 * 10 8 6 12 12 H 1.48500 * 109.47235 * 210.00162 * 10 8 6 13 13 H 1.48494 * 109.47112 * 330.00452 * 10 8 6 14 14 C 1.34773 * 119.99645 * 90.00238 * 4 3 2 15 15 O 1.21287 * 119.99676 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00453 * 359.97438 * 14 4 3 17 17 C 1.53008 * 109.47192 * 180.02562 * 16 14 4 18 18 N 1.46498 * 109.47060 * 180.02562 * 17 16 14 19 19 C 1.46492 * 120.00259 * 95.12522 * 18 17 16 20 20 C 1.50701 * 109.46870 * 85.00480 * 19 18 17 21 21 C 1.38236 * 120.00490 * 90.00110 * 20 19 18 22 22 C 1.38227 * 120.00748 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99735 * 359.97438 * 22 21 20 24 24 C 1.38237 * 119.99737 * 0.27962 * 23 22 21 25 25 C 1.38232 * 120.00175 * 359.50893 * 24 23 22 26 26 C 1.34781 * 119.99549 * 275.12706 * 18 17 16 27 27 C 1.50696 * 120.00296 * 5.22396 * 26 18 17 28 28 O 1.21283 * 119.99640 * 185.22659 * 26 18 17 29 29 H 1.08001 * 120.00291 * 359.97438 * 1 2 3 30 30 H 1.08006 * 120.00215 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00070 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46838 * 4.99272 * 3 2 1 33 33 H 1.09005 * 109.47080 * 244.99940 * 3 2 1 34 34 H 1.09000 * 109.47149 * 30.00227 * 5 4 3 35 35 H 1.09004 * 109.47097 * 150.00202 * 5 4 3 36 36 H 0.97004 * 119.99954 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46901 * 60.00464 * 16 14 4 38 38 H 1.08999 * 109.47041 * 300.00324 * 16 14 4 39 39 H 1.08999 * 109.46930 * 59.99742 * 17 16 14 40 40 H 1.09006 * 109.46839 * 300.00155 * 17 16 14 41 41 H 1.08994 * 109.47469 * 325.00472 * 19 18 17 42 42 H 1.08997 * 109.47210 * 205.00105 * 19 18 17 43 43 H 1.08006 * 119.99345 * 359.97438 * 21 20 19 44 44 H 1.07994 * 120.00698 * 180.02562 * 22 21 20 45 45 H 1.07999 * 120.00525 * 179.97438 * 23 22 21 46 46 H 1.08002 * 119.99922 * 179.72043 * 24 23 22 47 47 H 1.07999 * 120.00348 * 180.27928 * 25 24 23 48 48 H 1.08998 * 109.46919 * 355.06071 * 27 26 18 49 49 H 1.09005 * 109.47206 * 115.06021 * 27 26 18 50 50 H 1.08998 * 109.47263 * 235.06114 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4247 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8369 1.6366 8 6 2.5193 4.0666 3.6084 9 7 2.7679 5.3571 3.6566 10 14 1.7248 3.2133 5.0679 11 1 2.7809 2.7222 5.9892 12 1 0.8488 4.1736 5.7860 13 1 0.9132 2.0658 4.5887 14 6 4.2496 0.8662 0.9823 15 8 5.0199 0.8888 1.9188 16 6 4.6968 0.3173 -0.3480 17 6 6.1531 -0.1413 -0.2471 18 7 6.5880 -0.6742 -1.5405 19 6 7.2948 0.1902 -2.4887 20 6 8.7656 0.1986 -2.1607 21 6 9.6080 -0.7330 -2.7382 22 6 10.9572 -0.7251 -2.4378 23 6 11.4643 0.2150 -1.5602 24 6 10.6211 1.1433 -0.9787 25 6 9.2726 1.1381 -1.2825 26 6 6.3377 -1.9600 -1.8580 27 6 5.5093 -2.8165 -0.9355 28 8 6.7794 -2.4277 -2.8862 29 1 -0.5401 0.9353 0.0004 30 1 -0.5401 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0894 33 1 2.6213 1.4025 -0.9314 34 1 1.4888 1.6966 2.5458 35 1 3.0990 1.3604 3.2259 36 1 2.5397 5.8657 4.4505 37 1 4.6119 1.0937 -1.1084 38 1 4.0677 -0.5296 -0.6217 39 1 6.2376 -0.9177 0.5133 40 1 6.7825 0.7055 0.0268 41 1 6.9012 1.2042 -2.4190 42 1 7.1505 -0.1867 -3.5012 43 1 9.2118 -1.4672 -3.4241 44 1 11.6153 -1.4526 -2.8892 45 1 12.5184 0.2210 -1.3251 46 1 11.0166 1.8749 -0.2896 47 1 8.6146 1.8662 -0.8317 48 1 5.2774 -2.2560 -0.0299 49 1 4.5827 -3.0983 -1.4357 50 1 6.0685 -3.7147 -0.6737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292254196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:20 Heat of formation + Delta-G solvation = -39.092408 kcal Electronic energy + Delta-G solvation = -30163.570823 eV Core-core repulsion = 26155.766259 eV Total energy + Delta-G solvation = -4007.804565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39845 -40.61593 -39.77624 -37.38458 -36.89759 -35.06074 -33.72506 -33.67893 -31.85945 -31.76801 -30.53870 -29.94451 -27.03993 -26.80198 -25.61612 -23.74493 -23.34134 -22.45731 -21.13844 -20.09695 -19.84290 -19.06547 -18.27959 -18.03894 -17.68459 -17.26959 -16.87330 -16.60359 -16.38842 -15.99337 -15.87182 -15.75682 -15.56907 -14.89296 -14.63838 -14.46825 -14.32319 -14.25652 -14.04679 -14.03053 -13.63363 -13.46463 -13.36664 -13.18919 -13.01076 -12.99494 -12.85605 -12.66951 -12.49745 -12.29114 -12.18968 -12.05039 -11.92614 -11.86435 -11.71347 -10.94944 -10.81402 -10.69516 -10.29100 -9.86836 -9.84932 -9.67472 -9.41442 -8.32098 -6.36512 0.33054 0.47295 1.32675 1.36993 1.37513 1.45935 1.57991 1.80761 1.94722 2.32173 2.50982 2.92278 3.02855 3.53282 3.75481 3.80887 3.93130 3.95278 4.01145 4.12427 4.13704 4.25197 4.27659 4.28917 4.41907 4.45430 4.54130 4.55668 4.62286 4.66958 4.71582 4.75249 4.81372 4.86573 4.92067 4.97801 5.07921 5.11107 5.13244 5.14243 5.41861 5.48095 5.54614 5.55788 5.59335 5.65915 5.75402 5.95646 6.08503 6.25540 6.33176 6.65148 6.71217 7.11761 7.24011 7.43102 8.84593 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.002927 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.950321 B = 9562.676683 C =11320.265281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.180 4.180 3 C 0.131 3.869 4 N -0.595 5.595 5 C 0.227 3.773 6 C -0.532 4.532 7 H 0.031 0.969 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.943 3.057 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.239 1.239 14 C 0.505 3.495 15 O -0.588 6.588 16 C -0.144 4.144 17 C 0.131 3.869 18 N -0.600 5.600 19 C 0.150 3.850 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.117 4.117 26 C 0.512 3.488 27 C -0.179 4.179 28 O -0.582 6.582 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.136 0.864 47 H 0.124 0.876 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -15.586 -13.133 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 C 0.009 3.991 4 N -0.325 5.325 5 C 0.105 3.895 6 C -0.571 4.571 7 H 0.050 0.950 8 C -0.186 4.186 9 N -0.585 5.585 10 Si 0.766 3.234 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.162 1.162 14 C 0.294 3.706 15 O -0.469 6.469 16 C -0.185 4.185 17 C 0.008 3.992 18 N -0.331 5.331 19 C 0.028 3.972 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.136 4.136 26 C 0.303 3.697 27 C -0.237 4.237 28 O -0.462 6.462 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.161 0.839 46 H 0.153 0.847 47 H 0.142 0.858 48 H 0.108 0.892 49 H 0.132 0.868 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.585 -15.651 -13.085 21.437 hybrid contribution -0.183 0.610 0.944 1.139 sum 6.402 -15.041 -12.141 20.362 Atomic orbital electron populations 1.24068 0.95722 1.02816 0.98439 1.23327 0.96633 0.98226 1.01730 1.20837 0.92722 0.96493 0.89044 1.47970 1.12055 1.59782 1.12652 1.19261 0.95310 0.92073 0.82872 1.21562 1.40288 0.93520 1.01709 0.95025 1.25801 0.96007 0.95313 1.01473 1.70045 1.49570 1.08475 1.30453 0.85781 0.79110 0.79365 0.79121 1.20105 1.20338 1.16207 1.21077 0.81244 0.77503 0.90794 1.90670 1.53510 1.58480 1.44238 1.22111 0.98276 1.03909 0.94176 1.21258 0.93540 1.00543 0.83879 1.48091 1.56169 1.10760 1.18085 1.20441 0.87367 0.95700 0.93664 1.20298 0.96238 0.96586 0.98469 1.21237 0.94039 0.97977 0.99771 1.21427 0.95329 0.99445 0.98686 1.21479 1.00864 0.94935 0.96662 1.21443 0.93645 0.99673 1.00248 1.21282 0.96217 0.98684 0.97412 1.21370 0.79763 0.81968 0.86608 1.22094 1.01463 1.00379 0.99806 1.90665 1.54033 1.72853 1.28683 0.88640 0.86475 0.85872 0.90869 0.87817 0.93884 0.96135 0.92371 0.87193 0.86017 0.89133 0.90249 0.88299 0.89211 0.86428 0.84393 0.83918 0.84653 0.85788 0.89185 0.86774 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 14.32 67.79 0.97 -2.33 16 2 C -0.18 -3.78 9.74 25.65 0.25 -3.53 16 3 C 0.13 3.52 5.65 85.63 0.48 4.00 16 4 N -0.59 -21.75 2.44 -830.51 -2.03 -23.77 16 5 C 0.23 10.48 4.23 85.63 0.36 10.84 16 6 C -0.53 -30.11 9.94 25.60 0.25 -29.85 16 7 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 8 C 0.01 0.69 5.47 84.65 0.46 1.16 16 9 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16 10 Si 0.94 43.36 27.47 68.60 1.88 45.25 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 14 C 0.51 17.58 7.67 87.66 0.67 18.25 16 15 O -0.59 -26.01 15.56 -3.05 -0.05 -26.06 16 16 C -0.14 -3.17 4.31 29.85 0.13 -3.04 16 17 C 0.13 2.91 4.31 86.38 0.37 3.28 16 18 N -0.60 -12.50 2.47 -826.16 -2.04 -14.54 16 19 C 0.15 3.10 5.53 85.64 0.47 3.57 16 20 C -0.11 -2.59 5.46 -19.86 -0.11 -2.70 16 21 C -0.11 -2.53 9.70 22.27 0.22 -2.32 16 22 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 23 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 24 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 25 C -0.12 -2.62 9.48 22.27 0.21 -2.41 16 26 C 0.51 11.33 7.73 87.66 0.68 12.01 16 27 C -0.18 -2.72 9.48 71.23 0.68 -2.04 16 28 O -0.58 -16.75 16.44 -3.04 -0.05 -16.80 16 29 H 0.10 1.90 7.84 -2.91 -0.02 1.88 16 30 H 0.12 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.12 2.15 7.83 -2.91 -0.02 2.13 16 32 H 0.07 2.20 7.72 -2.39 -0.02 2.18 16 33 H 0.10 2.19 6.44 -2.38 -0.02 2.18 16 34 H 0.04 1.87 7.13 -2.39 -0.02 1.85 16 35 H 0.02 1.02 6.85 -2.39 -0.02 1.00 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.11 2.15 7.40 -2.39 -0.02 2.13 16 38 H 0.12 1.97 6.83 -2.39 -0.02 1.95 16 39 H 0.09 2.02 6.38 -2.39 -0.02 2.01 16 40 H 0.08 2.01 7.53 -2.38 -0.02 2.00 16 41 H 0.10 1.75 8.05 -2.39 -0.02 1.73 16 42 H 0.09 1.93 7.29 -2.39 -0.02 1.91 16 43 H 0.12 2.81 7.85 -2.91 -0.02 2.79 16 44 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.12 2.67 7.82 -2.91 -0.02 2.65 16 48 H 0.09 1.29 5.03 -2.39 -0.01 1.28 16 49 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.71 415.12 5.66 -72.05 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.86 Total: 24.08 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 6.77 Total: -1.95 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -3.76 Total: -96.58 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.10 Total: -42.86 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -77.71 5.66 -72.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.960 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds