Wall clock time and date at job start Wed Apr 1 2020 03:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46856 * 111.00046 * 2 1 4 4 C 1.53039 * 109.66089 * 173.68175 * 3 2 1 5 5 C 1.53267 * 109.17528 * 59.74986 * 4 3 2 6 6 C 1.52323 * 109.21969 * 303.50046 * 5 4 3 7 7 C 1.54513 * 110.18279 * 293.45348 * 6 5 4 8 8 C 1.55276 * 101.41188 * 206.48535 * 7 6 5 9 9 N 1.47487 * 104.77628 * 36.69580 * 8 7 6 10 10 C 1.34768 * 125.66458 * 155.88332 * 9 8 7 11 11 O 1.21593 * 120.00127 * 175.68565 * 10 9 8 12 12 C 1.47539 * 120.00217 * 355.67499 * 10 9 8 13 13 C 1.39665 * 120.19335 * 36.03442 * 12 10 9 14 14 C 1.37831 * 119.92192 * 180.02562 * 13 12 10 15 15 C 1.38572 * 120.31796 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40750 * 359.73971 * 15 14 13 17 17 C 1.38839 * 120.06424 * 0.51745 * 16 15 14 18 18 O 1.35530 * 120.15784 * 179.76427 * 17 16 15 19 19 C 1.34814 * 116.99791 * 5.42478 * 18 17 16 20 20 H 1.07998 * 120.00212 * 354.95127 * 19 18 17 21 21 C 1.38695 * 119.99914 * 174.68082 * 19 18 17 22 22 N 1.31528 * 119.99805 * 0.27179 * 21 19 18 23 23 Si 1.86801 * 120.00302 * 180.27221 * 21 19 18 24 24 H 1.48499 * 109.46735 * 59.99852 * 23 21 19 25 25 H 1.48498 * 109.47031 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47200 * 299.99999 * 23 21 19 27 27 C 1.47193 * 108.67212 * 335.61292 * 9 8 7 28 28 C 1.46987 * 110.99504 * 235.89051 * 2 1 3 29 29 H 1.08997 * 109.47310 * 184.11114 * 1 2 3 30 30 H 1.09005 * 109.46912 * 304.10855 * 1 2 3 31 31 H 1.08997 * 109.47442 * 64.10509 * 1 2 3 32 32 H 1.08997 * 109.43736 * 293.73693 * 3 2 1 33 33 H 1.09000 * 109.43387 * 53.66474 * 3 2 1 34 34 H 1.08998 * 109.51951 * 179.65928 * 4 3 2 35 35 H 1.09006 * 109.52239 * 299.78121 * 4 3 2 36 36 H 1.09000 * 109.51384 * 183.57886 * 5 4 3 37 37 H 1.08998 * 109.51076 * 63.42577 * 5 4 3 38 38 H 1.09002 * 111.01668 * 324.73876 * 7 6 5 39 39 H 1.08996 * 111.01203 * 88.58181 * 7 6 5 40 40 H 1.09000 * 110.50669 * 277.83064 * 8 7 6 41 41 H 1.09001 * 110.32655 * 155.45826 * 8 7 6 42 42 H 1.07998 * 120.04118 * 0.04484 * 13 12 10 43 43 H 1.07994 * 119.84164 * 179.97438 * 14 13 12 44 44 H 1.08009 * 119.79459 * 180.02562 * 15 14 13 45 45 H 1.07998 * 119.97019 * 180.27931 * 16 15 14 46 46 H 0.97002 * 119.99440 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.90648 * 121.14783 * 27 9 8 48 48 H 1.09005 * 109.90750 * 242.22328 * 27 9 8 49 49 H 1.09005 * 109.44879 * 64.49275 * 28 2 1 50 50 H 1.08994 * 109.42818 * 304.55505 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5171 1.3384 0.1586 5 6 4.1277 0.5498 -1.0051 6 6 3.5134 -0.8436 -1.0437 7 6 3.9340 -1.6464 0.2077 8 6 3.8412 -3.1047 -0.3174 9 7 4.3015 -3.0307 -1.7166 10 6 4.8229 -4.0502 -2.4273 11 8 5.0973 -3.8950 -3.6016 12 6 5.0608 -5.3547 -1.7803 13 6 4.1746 -5.8302 -0.8112 14 6 4.4026 -7.0493 -0.2100 15 6 5.5082 -7.8070 -0.5620 16 6 6.3900 -7.3522 -1.5215 17 6 6.1791 -6.1240 -2.1337 18 8 7.0464 -5.6735 -3.0727 19 6 8.0314 -6.5133 -3.4492 20 1 8.1522 -7.4628 -2.9490 21 6 8.8862 -6.1605 -4.4829 22 7 8.7392 -5.0041 -5.0921 23 14 10.2464 -7.3274 -5.0097 24 1 9.6506 -8.6112 -5.4593 25 1 11.0142 -6.7205 -6.1266 26 1 11.1553 -7.5784 -3.8625 27 6 4.0909 -1.6601 -2.2101 28 6 1.9956 -0.7695 -1.1362 29 1 -0.3634 -1.0250 0.0737 30 1 -0.3633 0.5763 0.8509 31 1 -0.3634 0.4488 -0.9244 32 1 1.7390 1.8579 -0.9409 33 1 1.5567 1.9279 0.8280 34 1 3.9059 2.3566 0.1522 35 1 3.7748 0.8560 1.1015 36 1 5.2055 0.4687 -0.8642 37 1 3.9202 1.0653 -1.9428 38 1 4.9524 -1.3986 0.5071 39 1 3.2366 -1.4832 1.0293 40 1 2.8120 -3.4611 -0.2751 41 1 4.4936 -3.7580 0.2621 42 1 3.3115 -5.2434 -0.5334 43 1 3.7167 -7.4155 0.5395 44 1 5.6784 -8.7613 -0.0858 45 1 7.2469 -7.9505 -1.7936 46 1 9.3373 -4.7572 -5.8148 47 1 5.0404 -1.2307 -2.5296 48 1 3.3887 -1.6695 -3.0438 49 1 1.7124 -0.2804 -2.0683 50 1 1.5812 -1.7774 -1.1147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294122302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:05 Heat of formation + Delta-G solvation = -20.393810 kcal Electronic energy + Delta-G solvation = -31048.874549 eV Core-core repulsion = 27041.880817 eV Total energy + Delta-G solvation = -4006.993732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.62676 -39.34701 -38.00919 -36.32516 -36.27629 -33.57281 -32.31991 -31.67250 -30.27781 -29.35848 -28.90201 -27.14772 -26.15258 -25.30169 -23.72933 -23.04092 -22.21578 -21.62675 -21.10706 -19.23268 -18.66327 -18.00493 -17.00293 -16.31912 -15.98166 -15.86796 -15.27446 -14.95623 -14.82587 -14.65435 -14.47961 -14.14678 -14.04153 -13.79564 -13.48809 -13.30047 -13.15489 -12.94438 -12.69905 -12.67002 -12.49939 -12.27220 -12.13555 -11.88866 -11.70060 -11.58367 -11.40000 -11.31456 -11.05823 -10.98584 -10.87238 -10.73137 -10.51010 -10.47301 -10.42143 -10.30663 -9.55070 -8.92852 -8.84304 -8.57264 -8.22620 -8.12832 -7.28617 -6.42732 -4.03036 1.81048 2.33607 3.12740 3.15443 3.17627 3.45470 3.65361 3.68795 3.95474 4.41401 4.49627 4.55607 4.60904 4.83306 4.89467 5.04986 5.07127 5.14175 5.18341 5.19304 5.24153 5.31075 5.36301 5.39576 5.49430 5.56636 5.57843 5.60611 5.65257 5.69428 5.74923 5.77452 5.84013 5.91429 5.97556 6.05055 6.08756 6.12617 6.18049 6.23762 6.30519 6.59851 6.63766 6.80377 6.81310 6.85715 6.97869 7.08988 7.27967 7.32241 7.71810 7.94967 8.10991 8.97547 9.03898 9.68384 10.72137 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002917 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.496480 B = 9596.492449 C =10822.712297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.066 4.066 7 C -0.116 4.116 8 C 0.100 3.900 9 N -0.625 5.625 10 C 0.581 3.419 11 O -0.509 6.509 12 C -0.217 4.217 13 C -0.045 4.045 14 C -0.228 4.228 15 C -0.053 4.053 16 C -0.238 4.238 17 C 0.190 3.810 18 O -0.140 6.140 19 C -0.401 4.401 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.840 5.840 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.123 3.877 28 C 0.071 3.929 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.272 0.728 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.035 0.965 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.199 9.663 12.906 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.067 4.067 7 C -0.154 4.154 8 C -0.023 4.023 9 N -0.362 5.362 10 C 0.372 3.628 11 O -0.383 6.383 12 C -0.221 4.221 13 C -0.064 4.064 14 C -0.247 4.247 15 C -0.071 4.071 16 C -0.257 4.257 17 C 0.131 3.869 18 O -0.039 6.039 19 C -0.477 4.477 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.472 5.472 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.001 4.001 28 C -0.057 4.057 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.689 9.820 12.250 20.186 hybrid contribution 0.335 -0.299 -0.976 1.074 sum -12.354 9.521 11.273 19.245 Atomic orbital electron populations 1.22345 0.87281 1.02349 1.00305 1.61950 1.07400 1.13655 1.43345 1.22103 0.95872 0.89134 1.00228 1.21604 0.94138 1.00071 0.99480 1.21488 1.00287 0.94072 0.98642 1.21057 0.94386 0.95365 0.95889 1.22838 1.02149 0.93297 0.97151 1.22550 0.99051 0.97694 0.82975 1.48411 1.64729 1.09719 1.13370 1.17923 0.76322 0.82865 0.85739 1.90867 1.49475 1.82653 1.15338 1.18721 0.99565 0.97366 1.06493 1.21002 0.96888 0.95547 0.92962 1.20475 1.01035 0.97222 1.06002 1.20892 0.93426 0.97932 0.94899 1.21130 1.03603 0.98383 1.02575 1.19205 0.88272 0.90793 0.88582 1.84065 1.34076 1.39834 1.45962 1.21387 1.07476 1.00640 1.18196 0.88909 1.25369 0.98574 0.97154 0.95210 1.70100 1.36208 1.19859 1.21029 0.85789 0.79626 0.79393 0.78653 1.19362 1.20185 1.19398 1.21736 1.00590 0.82230 0.95517 1.21971 0.93931 0.98563 0.91193 0.91251 0.91432 0.95815 0.95049 0.90938 0.91488 0.90756 0.91017 0.91953 0.90854 0.88763 0.91926 0.90091 0.86328 0.87250 0.87208 0.85088 0.91833 0.91310 0.92001 0.94649 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.76 16 2 N -0.54 -4.78 4.26 -243.34 -1.04 -5.82 16 3 C 0.05 0.43 5.44 -3.83 -0.02 0.41 16 4 C -0.12 -0.93 5.90 -26.57 -0.16 -1.08 16 5 C -0.11 -1.05 4.62 -26.94 -0.12 -1.17 16 6 C -0.07 -0.73 0.55 -154.11 -0.09 -0.82 16 7 C -0.12 -1.28 5.10 -24.73 -0.13 -1.41 16 8 C 0.10 1.34 4.82 -2.30 -0.01 1.32 16 9 N -0.62 -11.04 3.33 -171.74 -0.57 -11.61 16 10 C 0.58 13.44 7.39 -12.47 -0.09 13.34 16 11 O -0.51 -14.39 16.32 -12.10 -0.20 -14.59 16 12 C -0.22 -4.87 5.54 -104.81 -0.58 -5.45 16 13 C -0.05 -0.81 7.90 -39.20 -0.31 -1.12 16 14 C -0.23 -3.81 10.03 -39.61 -0.40 -4.21 16 15 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 16 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 17 C 0.19 4.81 6.63 -38.60 -0.26 4.55 16 18 O -0.14 -4.20 8.42 -16.62 -0.14 -4.34 16 19 C -0.40 -11.52 9.49 30.90 0.29 -11.23 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 22 N -0.84 -25.67 13.67 55.48 0.76 -24.91 16 23 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C 0.12 1.87 6.05 -3.33 -0.02 1.85 16 28 C 0.07 0.72 4.03 -4.16 -0.02 0.71 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 36 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 39 H 0.09 0.94 7.48 -51.93 -0.39 0.55 16 40 H 0.06 0.74 6.80 -51.93 -0.35 0.38 16 41 H 0.08 1.13 6.59 -51.93 -0.34 0.79 16 42 H 0.12 1.75 5.43 -52.49 -0.29 1.46 16 43 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 45 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.07 1.15 7.80 -51.93 -0.41 0.75 16 48 H 0.06 0.96 7.84 -51.93 -0.41 0.56 16 49 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.84 7.40 -51.93 -0.38 0.46 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -34.90 387.83 -10.26 -45.16 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.71 Total: 3.75 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.18 Total: -9.28 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.85 Total: -42.34 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.34 Total: -18.93 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.90 -10.26 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294122302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.765 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds