Wall clock time and date at job start Wed Apr 1 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46856 * 111.00046 * 2 1 4 4 C 1.53039 * 109.66089 * 173.68175 * 3 2 1 5 5 C 1.53267 * 109.17528 * 59.74986 * 4 3 2 6 6 C 1.52323 * 109.21969 * 303.50046 * 5 4 3 7 7 C 1.54513 * 110.18279 * 293.45348 * 6 5 4 8 8 C 1.55276 * 101.41188 * 206.48535 * 7 6 5 9 9 N 1.47487 * 104.77628 * 36.69580 * 8 7 6 10 10 C 1.34768 * 125.66458 * 155.88332 * 9 8 7 11 11 O 1.21593 * 120.00127 * 175.68565 * 10 9 8 12 12 C 1.47539 * 120.00217 * 355.67499 * 10 9 8 13 13 C 1.39665 * 120.19335 * 36.03442 * 12 10 9 14 14 C 1.37831 * 119.92192 * 180.02562 * 13 12 10 15 15 C 1.38572 * 120.31796 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40750 * 359.73971 * 15 14 13 17 17 C 1.38839 * 120.06424 * 0.51745 * 16 15 14 18 18 O 1.35530 * 120.15784 * 179.76427 * 17 16 15 19 19 C 1.34814 * 116.99791 * 5.42478 * 18 17 16 20 20 H 1.07998 * 120.00212 * 354.95127 * 19 18 17 21 21 C 1.38695 * 119.99914 * 174.68082 * 19 18 17 22 22 N 1.31528 * 119.99805 * 0.27179 * 21 19 18 23 23 Si 1.86801 * 120.00302 * 180.27221 * 21 19 18 24 24 H 1.48499 * 109.46735 * 59.99852 * 23 21 19 25 25 H 1.48498 * 109.47031 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47200 * 299.99999 * 23 21 19 27 27 C 1.47193 * 108.67212 * 335.61292 * 9 8 7 28 28 C 1.46987 * 110.99504 * 235.89051 * 2 1 3 29 29 H 1.08997 * 109.47310 * 184.11114 * 1 2 3 30 30 H 1.09005 * 109.46912 * 304.10855 * 1 2 3 31 31 H 1.08997 * 109.47442 * 64.10509 * 1 2 3 32 32 H 1.08997 * 109.43736 * 293.73693 * 3 2 1 33 33 H 1.09000 * 109.43387 * 53.66474 * 3 2 1 34 34 H 1.08998 * 109.51951 * 179.65928 * 4 3 2 35 35 H 1.09006 * 109.52239 * 299.78121 * 4 3 2 36 36 H 1.09000 * 109.51384 * 183.57886 * 5 4 3 37 37 H 1.08998 * 109.51076 * 63.42577 * 5 4 3 38 38 H 1.09002 * 111.01668 * 324.73876 * 7 6 5 39 39 H 1.08996 * 111.01203 * 88.58181 * 7 6 5 40 40 H 1.09000 * 110.50669 * 277.83064 * 8 7 6 41 41 H 1.09001 * 110.32655 * 155.45826 * 8 7 6 42 42 H 1.07998 * 120.04118 * 0.04484 * 13 12 10 43 43 H 1.07994 * 119.84164 * 179.97438 * 14 13 12 44 44 H 1.08009 * 119.79459 * 180.02562 * 15 14 13 45 45 H 1.07998 * 119.97019 * 180.27931 * 16 15 14 46 46 H 0.97002 * 119.99440 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.90648 * 121.14783 * 27 9 8 48 48 H 1.09005 * 109.90750 * 242.22328 * 27 9 8 49 49 H 1.09005 * 109.44879 * 64.49275 * 28 2 1 50 50 H 1.08994 * 109.42818 * 304.55505 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5171 1.3384 0.1586 5 6 4.1277 0.5498 -1.0051 6 6 3.5134 -0.8436 -1.0437 7 6 3.9340 -1.6464 0.2077 8 6 3.8412 -3.1047 -0.3174 9 7 4.3015 -3.0307 -1.7166 10 6 4.8229 -4.0502 -2.4273 11 8 5.0973 -3.8950 -3.6016 12 6 5.0608 -5.3547 -1.7803 13 6 4.1746 -5.8302 -0.8112 14 6 4.4026 -7.0493 -0.2100 15 6 5.5082 -7.8070 -0.5620 16 6 6.3900 -7.3522 -1.5215 17 6 6.1791 -6.1240 -2.1337 18 8 7.0464 -5.6735 -3.0727 19 6 8.0314 -6.5133 -3.4492 20 1 8.1522 -7.4628 -2.9490 21 6 8.8862 -6.1605 -4.4829 22 7 8.7392 -5.0041 -5.0921 23 14 10.2464 -7.3274 -5.0097 24 1 9.6506 -8.6112 -5.4593 25 1 11.0142 -6.7205 -6.1266 26 1 11.1553 -7.5784 -3.8625 27 6 4.0909 -1.6601 -2.2101 28 6 1.9956 -0.7695 -1.1362 29 1 -0.3634 -1.0250 0.0737 30 1 -0.3633 0.5763 0.8509 31 1 -0.3634 0.4488 -0.9244 32 1 1.7390 1.8579 -0.9409 33 1 1.5567 1.9279 0.8280 34 1 3.9059 2.3566 0.1522 35 1 3.7748 0.8560 1.1015 36 1 5.2055 0.4687 -0.8642 37 1 3.9202 1.0653 -1.9428 38 1 4.9524 -1.3986 0.5071 39 1 3.2366 -1.4832 1.0293 40 1 2.8120 -3.4611 -0.2751 41 1 4.4936 -3.7580 0.2621 42 1 3.3115 -5.2434 -0.5334 43 1 3.7167 -7.4155 0.5395 44 1 5.6784 -8.7613 -0.0858 45 1 7.2469 -7.9505 -1.7936 46 1 9.3373 -4.7572 -5.8148 47 1 5.0404 -1.2307 -2.5296 48 1 3.3887 -1.6695 -3.0438 49 1 1.7124 -0.2804 -2.0683 50 1 1.5812 -1.7774 -1.1147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294122302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:04 Heat of formation + Delta-G solvation = -43.853951 kcal Electronic energy + Delta-G solvation = -31049.891857 eV Core-core repulsion = 27041.880817 eV Total energy + Delta-G solvation = -4008.011041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84067 -40.87459 -39.56426 -38.05763 -37.55817 -34.54747 -34.34138 -32.83420 -31.68068 -30.67134 -30.42508 -27.90278 -27.53156 -27.04116 -25.01868 -23.87174 -23.44996 -23.18184 -22.20304 -20.75738 -19.89237 -19.69060 -18.58898 -17.93683 -17.27656 -16.78787 -16.61279 -16.33828 -16.16598 -15.94060 -15.69412 -15.56184 -15.35244 -15.27914 -14.93184 -14.77500 -14.37121 -14.15224 -13.88089 -13.76881 -13.57908 -13.55372 -13.50064 -13.11737 -13.01559 -12.88327 -12.59363 -12.57611 -12.50782 -12.28477 -12.16709 -12.07265 -11.82085 -11.46679 -11.41199 -11.32982 -11.18591 -10.84234 -10.71079 -9.84688 -9.64010 -9.26521 -9.04445 -8.47286 -6.18498 0.17883 0.70510 1.30664 1.44056 1.49043 1.85832 2.09247 2.14936 2.82789 2.91338 3.15205 3.41885 3.47704 3.55292 3.65499 3.88031 4.02099 4.12017 4.16694 4.20992 4.25853 4.29167 4.34022 4.48141 4.53189 4.55132 4.58208 4.60374 4.64506 4.65866 4.74167 4.82133 4.84729 4.94459 4.98373 4.98714 5.05936 5.09246 5.11218 5.11592 5.15062 5.21432 5.37038 5.43474 5.44833 5.51584 5.61019 5.69021 5.94706 6.08573 6.16346 6.17442 6.53359 6.92795 7.30674 7.76759 8.74236 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002917 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.496480 B = 9596.492449 C =10822.712297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.053 3.947 4 C -0.108 4.108 5 C -0.108 4.108 6 C -0.052 4.052 7 C -0.103 4.103 8 C 0.093 3.907 9 N -0.618 5.618 10 C 0.569 3.431 11 O -0.582 6.582 12 C -0.234 4.234 13 C -0.037 4.037 14 C -0.195 4.195 15 C -0.042 4.042 16 C -0.254 4.254 17 C 0.148 3.852 18 O -0.206 6.206 19 C -0.424 4.424 20 H 0.108 0.892 21 C -0.024 4.024 22 N -0.913 5.913 23 Si 1.024 2.976 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.251 1.251 27 C 0.117 3.883 28 C 0.077 3.923 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.125 0.875 46 H 0.271 0.729 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.028 0.972 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.891 8.426 17.464 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.074 4.074 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.053 4.053 7 C -0.141 4.141 8 C -0.029 4.029 9 N -0.352 5.352 10 C 0.360 3.640 11 O -0.462 6.462 12 C -0.239 4.239 13 C -0.056 4.056 14 C -0.213 4.213 15 C -0.060 4.060 16 C -0.273 4.273 17 C 0.094 3.906 18 O -0.110 6.110 19 C -0.500 4.500 20 H 0.126 0.874 21 C -0.223 4.223 22 N -0.549 5.549 23 Si 0.841 3.159 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.175 1.175 27 C -0.007 4.007 28 C -0.051 4.051 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.175 0.825 43 H 0.184 0.816 44 H 0.174 0.826 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.457 8.584 16.931 24.480 hybrid contribution 0.811 0.082 -2.071 2.226 sum -14.646 8.666 14.860 22.593 Atomic orbital electron populations 1.22405 0.86121 1.02915 1.00883 1.61976 1.08421 1.13996 1.42033 1.22169 0.95625 0.88816 1.00825 1.21575 0.94260 1.00478 0.98258 1.21501 0.99851 0.93554 0.99736 1.20963 0.95308 0.95306 0.93761 1.22810 1.02661 0.91314 0.97320 1.22914 1.00289 0.99584 0.80070 1.48432 1.62524 1.09291 1.14977 1.18298 0.76049 0.84378 0.85234 1.90820 1.52813 1.84034 1.18534 1.19121 0.99909 0.97174 1.07675 1.21461 0.96571 0.96466 0.91065 1.21188 1.00217 0.95290 1.04613 1.21436 0.92206 0.99531 0.92811 1.21295 1.04810 0.97296 1.03912 1.19970 0.89098 0.92894 0.88650 1.84063 1.36160 1.41561 1.49172 1.21968 1.07845 1.01341 1.18847 0.87441 1.26793 1.01490 0.99077 0.94908 1.70302 1.38658 1.23038 1.22908 0.84605 0.75857 0.76809 0.78579 1.17930 1.19826 1.17451 1.21912 0.99432 0.81795 0.97525 1.21835 0.92679 0.98862 0.91736 0.90895 0.89899 0.96033 0.95418 0.89099 0.90046 0.90385 0.91988 0.92308 0.91266 0.86210 0.88968 0.90130 0.82548 0.81621 0.82615 0.85749 0.92013 0.93972 0.92885 0.95402 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.60 127.69 1.23 1.51 16 2 N -0.54 -7.90 4.26 -923.80 -3.94 -11.84 16 3 C 0.05 0.69 5.44 86.32 0.47 1.16 16 4 C -0.11 -1.48 5.90 30.70 0.18 -1.30 16 5 C -0.11 -2.08 4.62 30.46 0.14 -1.94 16 6 C -0.05 -1.13 0.55 -51.93 -0.03 -1.16 16 7 C -0.10 -2.04 5.10 31.89 0.16 -1.88 16 8 C 0.09 2.26 4.82 86.97 0.42 2.68 16 9 N -0.62 -22.49 3.33 -815.54 -2.72 -25.20 16 10 C 0.57 27.99 7.39 86.70 0.64 28.63 16 11 O -0.58 -36.23 16.32 12.61 0.21 -36.02 16 12 C -0.23 -10.74 5.54 -19.99 -0.11 -10.85 16 13 C -0.04 -1.21 7.90 22.52 0.18 -1.03 16 14 C -0.19 -5.35 10.03 22.25 0.22 -5.13 16 15 C -0.04 -1.32 10.03 22.30 0.22 -1.10 16 16 C -0.25 -11.06 9.16 22.36 0.20 -10.86 16 17 C 0.15 7.85 6.63 22.91 0.15 8.01 16 18 O -0.21 -13.45 8.42 -3.54 -0.03 -13.48 16 19 C -0.42 -26.18 9.49 67.93 0.64 -25.53 16 20 H 0.11 5.91 5.20 -2.91 -0.02 5.90 16 21 C -0.02 -1.47 5.49 84.85 0.47 -1.00 16 22 N -0.91 -60.90 13.67 21.62 0.30 -60.61 16 23 Si 1.02 44.99 29.55 68.60 2.03 47.01 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 27 C 0.12 3.79 6.05 86.46 0.52 4.31 16 28 C 0.08 1.43 4.03 86.04 0.35 1.78 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 31 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.05 7.56 -2.38 -0.02 1.03 16 36 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.46 7.96 -2.39 -0.02 1.44 16 39 H 0.12 1.86 7.48 -2.39 -0.02 1.85 16 40 H 0.09 1.77 6.80 -2.39 -0.02 1.75 16 41 H 0.08 2.01 6.59 -2.39 -0.02 2.00 16 42 H 0.16 3.82 5.43 -2.91 -0.02 3.81 16 43 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 45 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 46 H 0.27 16.58 8.31 -92.71 -0.77 15.81 16 47 H 0.04 1.57 7.80 -2.39 -0.02 1.56 16 48 H 0.05 1.79 7.84 -2.38 -0.02 1.78 16 49 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 50 H 0.08 1.47 7.40 -2.39 -0.02 1.46 16 Total: -1.00 -89.64 387.83 2.84 -86.80 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.94 Total: 27.03 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 6.06 Total: -13.70 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -6.36 Total: -97.65 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: 0.18 Total: -49.50 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -89.64 2.84 -86.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294122302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.942 kcal (2) G-P(sol) polarization free energy of solvation -89.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds