Wall clock time and date at job start Wed Apr 1 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47254 * 2 1 4 4 C 1.37111 * 119.99762 * 274.07197 * 3 2 1 5 5 H 1.07994 * 119.99414 * 184.91509 * 4 3 2 6 6 C 1.38947 * 119.99944 * 4.91842 * 4 3 2 7 7 N 1.31417 * 120.00007 * 15.32425 * 6 4 3 8 8 Si 1.86795 * 120.00098 * 195.32532 * 6 4 3 9 9 H 1.48503 * 109.47281 * 89.99488 * 8 6 4 10 10 H 1.48497 * 109.47340 * 209.99855 * 8 6 4 11 11 H 1.48504 * 109.46893 * 330.00107 * 8 6 4 12 12 C 1.34778 * 120.00645 * 94.07315 * 3 2 1 13 13 O 1.21294 * 119.99650 * 5.72044 * 12 3 2 14 14 C 1.50693 * 120.00393 * 185.71898 * 12 3 2 15 15 H 1.09005 * 110.88800 * 49.46726 * 14 12 3 16 16 C 1.54629 * 110.97227 * 285.66193 * 14 12 3 17 17 C 1.51286 * 104.19194 * 266.68018 * 16 14 12 18 18 O 1.21288 * 124.94107 * 164.01636 * 17 16 14 19 19 N 1.34413 * 110.11813 * 343.74616 * 17 16 14 20 20 C 1.39929 * 124.35180 * 179.57894 * 19 17 16 21 21 C 1.38875 * 120.06441 * 269.74135 * 20 19 17 22 22 C 1.50696 * 120.03704 * 0.02719 * 21 20 19 23 23 C 1.38109 * 119.92508 * 179.74258 * 21 20 19 24 24 C 1.38277 * 120.07183 * 0.53850 * 23 21 20 25 25 C 1.50703 * 119.93324 * 179.71989 * 24 23 21 26 26 C 1.38281 * 120.14368 * 359.73618 * 24 23 21 27 27 C 1.38121 * 120.06841 * 359.97438 * 26 24 23 28 28 C 1.50696 * 120.03324 * 179.97438 * 27 26 24 29 29 C 1.46769 * 111.29823 * 359.59110 * 19 17 16 30 30 H 1.08998 * 109.47436 * 182.60439 * 1 2 3 31 31 H 1.09001 * 109.47117 * 302.60423 * 1 2 3 32 32 H 1.08996 * 109.47143 * 62.60163 * 1 2 3 33 33 H 1.08996 * 109.47104 * 239.99843 * 2 1 3 34 34 H 1.08996 * 109.47135 * 119.99583 * 2 1 3 35 35 H 0.96994 * 119.99843 * 180.02562 * 7 6 4 36 36 H 1.08993 * 110.49124 * 148.00148 * 16 14 12 37 37 H 1.09008 * 110.48343 * 25.35423 * 16 14 12 38 38 H 1.08997 * 109.47588 * 89.99519 * 22 21 20 39 39 H 1.09000 * 109.47202 * 209.99748 * 22 21 20 40 40 H 1.09004 * 109.47178 * 329.99731 * 22 21 20 41 41 H 1.08002 * 119.96646 * 180.27812 * 23 21 20 42 42 H 1.09003 * 109.46966 * 270.02262 * 25 24 23 43 43 H 1.09004 * 109.46952 * 30.01769 * 25 24 23 44 44 H 1.08993 * 109.47682 * 150.01720 * 25 24 23 45 45 H 1.07994 * 119.96720 * 180.02562 * 26 24 23 46 46 H 1.09002 * 109.47091 * 270.01987 * 28 27 26 47 47 H 1.08996 * 109.47668 * 30.02607 * 28 27 26 48 48 H 1.09004 * 109.46963 * 150.02382 * 28 27 26 49 49 H 1.09000 * 110.24360 * 136.02407 * 29 19 17 50 50 H 1.09005 * 110.24589 * 258.01630 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1673 2.0556 -1.1844 5 1 2.6016 3.0443 -1.1918 6 6 1.7596 1.4669 -2.3752 7 7 0.9695 0.4170 -2.3523 8 14 2.3344 2.1677 -4.0084 9 1 3.6055 1.5124 -4.4085 10 1 1.3011 1.9182 -5.0454 11 1 2.5537 3.6299 -3.8699 12 6 2.3212 1.9890 1.1642 13 8 2.2892 1.3619 2.2020 14 6 2.6996 3.4476 1.1766 15 1 1.9774 4.0412 0.6160 16 6 4.1302 3.6529 0.6269 17 6 5.0074 3.6340 1.8593 18 8 6.2115 3.4882 1.8527 19 7 4.2590 3.8081 2.9621 20 6 4.7673 3.8318 4.2656 21 6 4.8595 2.6554 4.9979 22 6 4.4128 1.3511 4.3894 23 6 5.3666 2.6812 6.2822 24 6 5.7719 3.8784 6.8432 25 6 6.3189 3.9039 8.2472 26 6 5.6761 5.0523 6.1188 27 6 5.1754 5.0324 4.8317 28 6 5.0708 6.3123 4.0432 29 6 2.8401 3.9700 2.6235 30 1 -0.3634 -1.0266 0.0467 31 1 -0.3633 0.5537 0.8657 32 1 -0.3633 0.4729 -0.9124 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.6852 0.0058 -3.1835 36 1 4.2089 4.6132 0.1173 37 1 4.4005 2.8394 -0.0464 38 1 5.2527 0.8829 3.8763 39 1 4.0520 0.6880 5.1757 40 1 3.6103 1.5390 3.6760 41 1 5.4428 1.7661 6.8507 42 1 5.5023 4.0588 8.9525 43 1 6.8102 2.9551 8.4630 44 1 7.0397 4.7160 8.3417 45 1 5.9938 5.9856 6.5596 46 1 4.0972 6.7694 4.2200 47 1 5.8570 6.9984 4.3581 48 1 5.1825 6.0948 2.9809 49 1 2.2214 3.3798 3.2995 50 1 2.5579 5.0217 2.6740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299331700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:07 Heat of formation + Delta-G solvation = -30.579450 kcal Electronic energy + Delta-G solvation = -31800.208777 eV Core-core repulsion = 27792.773362 eV Total energy + Delta-G solvation = -4007.435415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.93050 -39.20741 -38.21302 -36.02414 -35.05385 -33.81521 -33.41823 -31.64218 -31.14884 -29.50991 -27.85054 -27.27057 -26.55182 -26.12523 -24.97104 -23.28679 -21.16206 -21.07248 -20.72327 -19.26435 -19.12347 -17.42138 -17.13505 -16.47871 -16.05740 -15.05564 -14.75400 -14.71408 -14.41384 -14.18362 -14.11926 -13.98689 -13.81011 -13.30040 -13.25616 -13.05910 -12.87314 -12.81664 -12.72813 -12.53683 -12.48300 -12.29476 -12.06288 -11.71356 -11.61338 -11.40718 -11.21754 -11.12699 -11.07319 -10.99569 -10.92882 -10.88186 -10.61677 -10.49481 -10.27015 -9.84138 -9.51657 -8.93747 -8.56867 -8.48802 -8.41292 -8.27481 -7.86563 -6.39699 -3.99968 1.31773 1.47294 2.92041 3.02634 3.14551 3.15311 3.29135 3.66000 3.73299 3.95668 4.54659 4.78047 4.78532 4.85482 4.89605 4.93685 5.08233 5.26933 5.29853 5.35782 5.47523 5.48372 5.57495 5.59121 5.62496 5.72077 5.77395 5.81570 5.91258 5.96858 6.02952 6.10046 6.16391 6.22303 6.27637 6.37127 6.49047 6.58316 6.60977 6.71273 6.75369 6.84101 6.86799 6.94404 7.03981 7.19893 7.25273 7.40287 7.42808 7.67771 7.85160 8.35739 8.55838 8.96073 9.41313 9.81814 10.48962 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003304 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.412996 B = 8471.969378 C = 9335.301384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.134 3.866 3 N -0.431 5.431 4 C -0.333 4.333 5 H 0.104 0.896 6 C 0.034 3.966 7 N -0.857 5.857 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.453 3.547 13 O -0.601 6.601 14 C -0.102 4.102 15 H 0.114 0.886 16 C -0.141 4.141 17 C 0.526 3.474 18 O -0.533 6.533 19 N -0.567 5.567 20 C 0.140 3.860 21 C -0.054 4.054 22 C -0.138 4.138 23 C -0.127 4.127 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.129 4.129 27 C -0.072 4.072 28 C -0.109 4.109 29 C 0.121 3.879 30 H 0.030 0.970 31 H 0.017 0.983 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.268 0.732 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 8.426 10.999 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 N -0.148 5.148 4 C -0.460 4.460 5 H 0.121 0.879 6 C -0.170 4.170 7 N -0.496 5.496 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.241 3.759 13 O -0.490 6.490 14 C -0.124 4.124 15 H 0.132 0.868 16 C -0.182 4.182 17 C 0.315 3.685 18 O -0.409 6.409 19 N -0.297 5.297 20 C 0.051 3.949 21 C -0.056 4.056 22 C -0.195 4.195 23 C -0.146 4.146 24 C -0.081 4.081 25 C -0.168 4.168 26 C -0.147 4.147 27 C -0.073 4.073 28 C -0.166 4.166 29 C -0.001 4.001 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.139 0.861 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.090 7.877 11.333 14.395 hybrid contribution 0.104 0.258 -0.964 1.004 sum 4.194 8.135 10.369 13.830 Atomic orbital electron populations 1.22185 0.96658 0.99087 1.01948 1.21319 0.94472 0.82644 1.00408 1.43815 1.54245 1.11957 1.04756 1.19815 1.40493 1.02351 0.83380 0.87871 1.25256 0.95278 0.96694 0.99810 1.70201 1.29954 1.21983 1.27478 0.86002 0.78631 0.79313 0.81231 1.20204 1.20902 1.19386 1.19514 0.84507 0.88017 0.83885 1.90398 1.60390 1.66135 1.32035 1.22049 0.97473 0.97633 0.95242 0.86828 1.22344 0.93684 1.05690 0.96467 1.21094 0.87446 0.74334 0.85595 1.90682 1.13726 1.49815 1.86697 1.45409 1.08817 1.71996 1.03524 1.17065 1.01003 0.92152 0.84728 1.20318 0.95939 0.95644 0.93669 1.21172 1.03579 0.92581 1.02124 1.20811 1.01251 0.97550 0.94939 1.19884 0.98668 0.93191 0.96307 1.20762 1.00593 1.02601 0.92817 1.20668 1.02656 0.97706 0.93687 1.20053 0.97916 0.94752 0.94608 1.20693 1.01939 0.93959 0.99979 1.22091 0.80940 1.00353 0.96733 0.95138 0.96424 0.88399 0.88484 0.94301 0.92124 0.87646 0.86533 0.91898 0.92297 0.86419 0.85984 0.91267 0.91630 0.91701 0.86060 0.91149 0.91664 0.91587 0.88865 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.60 37.16 0.36 -2.76 16 2 C 0.13 3.13 5.48 -4.04 -0.02 3.11 16 3 N -0.43 -9.95 2.63 -114.82 -0.30 -10.25 16 4 C -0.33 -7.54 8.53 -14.93 -0.13 -7.66 16 5 H 0.10 2.14 5.47 -52.49 -0.29 1.85 16 6 C 0.03 0.77 5.20 -17.47 -0.09 0.68 16 7 N -0.86 -20.15 7.43 55.50 0.41 -19.73 16 8 Si 0.92 18.07 29.58 -169.99 -5.03 13.04 16 9 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 12 C 0.45 9.78 6.90 -10.99 -0.08 9.71 16 13 O -0.60 -14.06 12.19 5.55 0.07 -14.00 16 14 C -0.10 -1.75 2.51 -90.15 -0.23 -1.98 16 15 H 0.11 1.77 7.72 -51.93 -0.40 1.37 16 16 C -0.14 -2.39 5.31 -26.74 -0.14 -2.54 16 17 C 0.53 9.98 7.40 -10.86 -0.08 9.90 16 18 O -0.53 -11.85 17.71 5.55 0.10 -11.75 16 19 N -0.57 -9.68 1.10 -112.26 -0.12 -9.81 16 20 C 0.14 2.36 5.34 -83.69 -0.45 1.91 16 21 C -0.05 -0.91 5.90 -104.44 -0.62 -1.53 16 22 C -0.14 -2.47 9.77 36.00 0.35 -2.12 16 23 C -0.13 -1.79 9.35 -39.61 -0.37 -2.16 16 24 C -0.08 -1.00 5.88 -104.59 -0.62 -1.62 16 25 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 26 C -0.13 -1.63 9.35 -39.61 -0.37 -2.00 16 27 C -0.07 -1.04 5.90 -104.43 -0.62 -1.66 16 28 C -0.11 -1.32 9.77 36.00 0.35 -0.96 16 29 C 0.12 1.88 6.18 -3.12 -0.02 1.86 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 2.32 5.78 -51.93 -0.30 2.02 16 33 H 0.10 2.38 5.99 -51.93 -0.31 2.07 16 34 H 0.04 0.92 7.24 -51.93 -0.38 0.55 16 35 H 0.27 6.04 8.31 -40.82 -0.34 5.70 16 36 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.12 2.21 6.97 -51.92 -0.36 1.85 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.12 2.39 3.74 -51.93 -0.19 2.19 16 41 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 44 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 48 H 0.07 0.89 6.98 -51.93 -0.36 0.53 16 49 H 0.09 1.59 6.95 -51.93 -0.36 1.23 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -28.22 390.90 -8.96 -37.17 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.57 Total: 9.88 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.40 Total: -0.45 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.01 Total: -39.80 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: 0.17 Total: -25.75 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.22 -8.96 -37.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299331700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.595 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds