Wall clock time and date at job start Wed Apr 1 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47254 * 2 1 4 4 C 1.37111 * 119.99762 * 274.07197 * 3 2 1 5 5 H 1.07994 * 119.99414 * 184.91509 * 4 3 2 6 6 C 1.38947 * 119.99944 * 4.91842 * 4 3 2 7 7 N 1.31417 * 120.00007 * 15.32425 * 6 4 3 8 8 Si 1.86795 * 120.00098 * 195.32532 * 6 4 3 9 9 H 1.48503 * 109.47281 * 89.99488 * 8 6 4 10 10 H 1.48497 * 109.47340 * 209.99855 * 8 6 4 11 11 H 1.48504 * 109.46893 * 330.00107 * 8 6 4 12 12 C 1.34778 * 120.00645 * 94.07315 * 3 2 1 13 13 O 1.21294 * 119.99650 * 5.72044 * 12 3 2 14 14 C 1.50693 * 120.00393 * 185.71898 * 12 3 2 15 15 H 1.09005 * 110.88800 * 49.46726 * 14 12 3 16 16 C 1.54629 * 110.97227 * 285.66193 * 14 12 3 17 17 C 1.51286 * 104.19194 * 266.68018 * 16 14 12 18 18 O 1.21288 * 124.94107 * 164.01636 * 17 16 14 19 19 N 1.34413 * 110.11813 * 343.74616 * 17 16 14 20 20 C 1.39929 * 124.35180 * 179.57894 * 19 17 16 21 21 C 1.38875 * 120.06441 * 269.74135 * 20 19 17 22 22 C 1.50696 * 120.03704 * 0.02719 * 21 20 19 23 23 C 1.38109 * 119.92508 * 179.74258 * 21 20 19 24 24 C 1.38277 * 120.07183 * 0.53850 * 23 21 20 25 25 C 1.50703 * 119.93324 * 179.71989 * 24 23 21 26 26 C 1.38281 * 120.14368 * 359.73618 * 24 23 21 27 27 C 1.38121 * 120.06841 * 359.97438 * 26 24 23 28 28 C 1.50696 * 120.03324 * 179.97438 * 27 26 24 29 29 C 1.46769 * 111.29823 * 359.59110 * 19 17 16 30 30 H 1.08998 * 109.47436 * 182.60439 * 1 2 3 31 31 H 1.09001 * 109.47117 * 302.60423 * 1 2 3 32 32 H 1.08996 * 109.47143 * 62.60163 * 1 2 3 33 33 H 1.08996 * 109.47104 * 239.99843 * 2 1 3 34 34 H 1.08996 * 109.47135 * 119.99583 * 2 1 3 35 35 H 0.96994 * 119.99843 * 180.02562 * 7 6 4 36 36 H 1.08993 * 110.49124 * 148.00148 * 16 14 12 37 37 H 1.09008 * 110.48343 * 25.35423 * 16 14 12 38 38 H 1.08997 * 109.47588 * 89.99519 * 22 21 20 39 39 H 1.09000 * 109.47202 * 209.99748 * 22 21 20 40 40 H 1.09004 * 109.47178 * 329.99731 * 22 21 20 41 41 H 1.08002 * 119.96646 * 180.27812 * 23 21 20 42 42 H 1.09003 * 109.46966 * 270.02262 * 25 24 23 43 43 H 1.09004 * 109.46952 * 30.01769 * 25 24 23 44 44 H 1.08993 * 109.47682 * 150.01720 * 25 24 23 45 45 H 1.07994 * 119.96720 * 180.02562 * 26 24 23 46 46 H 1.09002 * 109.47091 * 270.01987 * 28 27 26 47 47 H 1.08996 * 109.47668 * 30.02607 * 28 27 26 48 48 H 1.09004 * 109.46963 * 150.02382 * 28 27 26 49 49 H 1.09000 * 110.24360 * 136.02407 * 29 19 17 50 50 H 1.09005 * 110.24589 * 258.01630 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1673 2.0556 -1.1844 5 1 2.6016 3.0443 -1.1918 6 6 1.7596 1.4669 -2.3752 7 7 0.9695 0.4170 -2.3523 8 14 2.3344 2.1677 -4.0084 9 1 3.6055 1.5124 -4.4085 10 1 1.3011 1.9182 -5.0454 11 1 2.5537 3.6299 -3.8699 12 6 2.3212 1.9890 1.1642 13 8 2.2892 1.3619 2.2020 14 6 2.6996 3.4476 1.1766 15 1 1.9774 4.0412 0.6160 16 6 4.1302 3.6529 0.6269 17 6 5.0074 3.6340 1.8593 18 8 6.2115 3.4882 1.8527 19 7 4.2590 3.8081 2.9621 20 6 4.7673 3.8318 4.2656 21 6 4.8595 2.6554 4.9979 22 6 4.4128 1.3511 4.3894 23 6 5.3666 2.6812 6.2822 24 6 5.7719 3.8784 6.8432 25 6 6.3189 3.9039 8.2472 26 6 5.6761 5.0523 6.1188 27 6 5.1754 5.0324 4.8317 28 6 5.0708 6.3123 4.0432 29 6 2.8401 3.9700 2.6235 30 1 -0.3634 -1.0266 0.0467 31 1 -0.3633 0.5537 0.8657 32 1 -0.3633 0.4729 -0.9124 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.6852 0.0058 -3.1835 36 1 4.2089 4.6132 0.1173 37 1 4.4005 2.8394 -0.0464 38 1 5.2527 0.8829 3.8763 39 1 4.0520 0.6880 5.1757 40 1 3.6103 1.5390 3.6760 41 1 5.4428 1.7661 6.8507 42 1 5.5023 4.0588 8.9525 43 1 6.8102 2.9551 8.4630 44 1 7.0397 4.7160 8.3417 45 1 5.9938 5.9856 6.5596 46 1 4.0972 6.7694 4.2200 47 1 5.8570 6.9984 4.3581 48 1 5.1825 6.0948 2.9809 49 1 2.2214 3.3798 3.2995 50 1 2.5579 5.0217 2.6740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299331700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:06 Heat of formation + Delta-G solvation = -42.381749 kcal Electronic energy + Delta-G solvation = -31800.720563 eV Core-core repulsion = 27792.773362 eV Total energy + Delta-G solvation = -4007.947201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.27678 -40.55679 -39.72706 -37.55845 -36.74907 -34.98932 -34.53926 -33.37022 -32.50804 -31.17479 -28.87463 -28.64874 -27.64761 -27.25560 -26.70903 -24.86338 -22.72722 -22.31652 -21.84109 -20.88371 -20.44069 -18.99164 -18.45165 -18.08522 -17.42820 -16.54091 -16.18097 -16.15373 -15.83387 -15.69112 -15.49410 -15.24843 -14.99682 -14.83167 -14.46501 -14.32101 -14.11367 -13.98310 -13.98148 -13.87278 -13.65850 -13.49634 -13.37882 -13.27152 -12.99074 -12.82994 -12.70417 -12.56899 -12.44616 -12.39098 -12.15391 -12.10580 -12.06238 -11.98596 -11.92231 -11.64914 -10.99319 -10.74491 -10.19489 -9.87193 -9.67263 -9.53551 -9.38225 -8.13117 -5.77949 0.22635 0.37863 1.45598 1.47559 1.55358 1.63013 1.99757 2.05274 2.32529 2.61946 2.93966 3.19261 3.41052 3.66132 3.82215 3.82778 3.92101 3.94958 4.11902 4.32681 4.40227 4.45173 4.52274 4.53773 4.58428 4.64884 4.67418 4.70670 4.75343 4.76166 4.78846 4.87744 4.89210 4.93714 4.97104 4.99076 5.05369 5.09882 5.19697 5.25619 5.37770 5.45098 5.47465 5.56846 5.60022 5.65461 5.70620 5.90560 6.00001 6.00450 6.13515 6.57514 7.15060 7.20837 7.67130 8.08108 8.76754 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003304 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.412996 B = 8471.969378 C = 9335.301384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.137 3.863 3 N -0.447 5.447 4 C -0.345 4.345 5 H 0.123 0.877 6 C -0.007 4.007 7 N -0.881 5.881 8 Si 0.982 3.018 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.252 1.252 12 C 0.443 3.557 13 O -0.625 6.625 14 C -0.094 4.094 15 H 0.139 0.861 16 C -0.133 4.133 17 C 0.517 3.483 18 O -0.577 6.577 19 N -0.558 5.558 20 C 0.105 3.895 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.076 4.076 25 C -0.109 4.109 26 C -0.126 4.126 27 C -0.080 4.080 28 C -0.106 4.106 29 C 0.125 3.875 30 H 0.043 0.957 31 H 0.010 0.990 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.267 0.733 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.136 0.864 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.155 0.845 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 11.577 12.203 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.014 3.986 3 N -0.163 5.163 4 C -0.472 4.472 5 H 0.140 0.860 6 C -0.208 4.208 7 N -0.521 5.521 8 Si 0.807 3.193 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.176 1.176 12 C 0.232 3.768 13 O -0.514 6.514 14 C -0.116 4.116 15 H 0.157 0.843 16 C -0.173 4.173 17 C 0.308 3.692 18 O -0.457 6.457 19 N -0.286 5.286 20 C 0.016 3.984 21 C -0.085 4.085 22 C -0.188 4.188 23 C -0.154 4.154 24 C -0.076 4.076 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.081 4.081 28 C -0.163 4.163 29 C 0.004 3.996 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.154 0.846 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.172 0.828 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.431 11.048 12.564 17.307 hybrid contribution -0.001 -0.783 -1.190 1.425 sum 4.430 10.265 11.373 15.948 Atomic orbital electron populations 1.22012 0.95705 0.99723 1.00859 1.21179 0.95194 0.83422 0.98812 1.44018 1.54844 1.11803 1.05657 1.20234 1.40547 1.03164 0.83243 0.85966 1.25996 0.95257 0.97123 1.02441 1.70289 1.30775 1.23027 1.27968 0.85061 0.77266 0.79497 0.77445 1.21193 1.21392 1.17578 1.20338 0.83478 0.89900 0.83074 1.90399 1.60901 1.67312 1.32796 1.22031 0.98068 0.94588 0.96886 0.84333 1.22329 0.92653 1.06860 0.95484 1.21434 0.87150 0.73896 0.86737 1.90643 1.15512 1.52133 1.87391 1.45409 1.09012 1.70643 1.03560 1.17409 1.02980 0.93314 0.84709 1.20361 0.98030 0.94912 0.95180 1.21002 1.01868 0.94032 1.01850 1.21037 1.01071 0.99176 0.94117 1.20332 0.97053 0.92362 0.97900 1.20836 1.01415 1.03765 0.90506 1.21101 1.01273 0.99131 0.92944 1.20382 0.97362 0.94747 0.95598 1.20731 1.03816 0.93198 0.98517 1.22187 0.80032 1.02355 0.95038 0.93756 0.97052 0.89538 0.89911 0.95802 0.92271 0.83776 0.88746 0.94161 0.91143 0.88801 0.84649 0.89705 0.90983 0.89962 0.82774 0.89161 0.89692 0.93303 0.90637 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.60 71.98 0.69 -4.96 16 2 C 0.14 6.64 5.48 86.38 0.47 7.11 16 3 N -0.45 -20.98 2.63 -635.56 -1.67 -22.65 16 4 C -0.34 -15.51 8.53 84.04 0.72 -14.80 16 5 H 0.12 4.88 5.47 -2.91 -0.02 4.86 16 6 C -0.01 -0.30 5.20 84.92 0.44 0.14 16 7 N -0.88 -41.96 7.43 21.66 0.16 -41.80 16 8 Si 0.98 36.57 29.58 68.60 2.03 38.60 16 9 H -0.29 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.29 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 12 C 0.44 19.45 6.90 87.65 0.60 20.05 16 13 O -0.62 -30.35 12.19 -3.07 -0.04 -30.39 16 14 C -0.09 -3.14 2.51 -10.49 -0.03 -3.16 16 15 H 0.14 3.94 7.72 -2.38 -0.02 3.93 16 16 C -0.13 -4.38 5.31 30.59 0.16 -4.22 16 17 C 0.52 19.77 7.40 87.90 0.65 20.42 16 18 O -0.58 -26.35 17.71 -3.05 -0.05 -26.40 16 19 N -0.56 -18.92 1.10 -627.68 -0.69 -19.61 16 20 C 0.11 3.51 5.34 38.15 0.20 3.71 16 21 C -0.08 -2.84 5.90 -19.74 -0.12 -2.96 16 22 C -0.13 -4.95 9.77 71.23 0.70 -4.25 16 23 C -0.14 -3.72 9.35 22.25 0.21 -3.51 16 24 C -0.08 -1.71 5.88 -19.84 -0.12 -1.83 16 25 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 26 C -0.13 -2.81 9.35 22.25 0.21 -2.60 16 27 C -0.08 -2.15 5.90 -19.74 -0.12 -2.26 16 28 C -0.11 -2.25 9.77 71.23 0.70 -1.56 16 29 C 0.13 3.76 6.18 86.83 0.54 4.29 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 4.16 5.78 -2.39 -0.01 4.15 16 33 H 0.08 4.23 5.99 -2.39 -0.01 4.22 16 34 H 0.02 1.19 7.24 -2.39 -0.02 1.17 16 35 H 0.27 12.20 8.31 -92.71 -0.77 11.43 16 36 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.09 3.59 6.97 -2.38 -0.02 3.58 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 40 H 0.09 4.02 3.74 -2.38 -0.01 4.01 16 41 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 0.95 8.08 -2.38 -0.02 0.94 16 44 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 45 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 48 H 0.05 1.21 6.98 -2.38 -0.02 1.20 16 49 H 0.08 2.58 6.95 -2.39 -0.02 2.56 16 50 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -64.59 390.90 7.31 -57.28 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.95 Total: 36.20 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.63 Total: 8.78 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.20 Total: -84.06 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.09 Total: -56.79 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -64.59 7.31 -57.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299331700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.895 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds