Wall clock time and date at job start Wed Apr 1 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99862 * 2 1 4 4 N 1.34777 * 120.00493 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00741 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47662 * 154.99704 * 5 4 2 7 7 C 1.53001 * 109.47273 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46768 * 299.99783 * 7 6 5 9 9 N 1.46502 * 109.46915 * 180.02562 * 8 7 6 10 10 C 1.46500 * 119.99994 * 299.99974 * 9 8 7 11 11 C 1.34776 * 120.00050 * 120.00093 * 9 8 7 12 12 O 1.21587 * 119.99663 * 4.66929 * 11 9 8 13 13 C 1.47641 * 120.00063 * 184.67210 * 11 9 8 14 14 C 1.40010 * 119.89761 * 22.27422 * 13 11 9 15 15 C 1.36311 * 120.10908 * 179.71892 * 14 13 11 16 16 C 1.40892 * 119.89187 * 0.57716 * 15 14 13 17 17 C 1.41105 * 120.10788 * 179.67686 * 16 15 14 18 18 H 1.07995 * 120.00373 * 209.03640 * 17 16 15 19 19 C 1.40234 * 119.99922 * 29.03301 * 17 16 15 20 20 N 1.30649 * 119.99731 * 10.23688 * 19 17 16 21 21 Si 1.86798 * 119.99930 * 190.24191 * 19 17 16 22 22 H 1.48501 * 109.47099 * 89.99976 * 21 19 17 23 23 H 1.48503 * 109.46969 * 209.99690 * 21 19 17 24 24 H 1.48500 * 109.47275 * 329.99724 * 21 19 17 25 25 C 1.40897 * 119.78965 * 359.69424 * 16 15 14 26 26 C 1.36314 * 119.89257 * 0.02562 * 25 16 15 27 27 C 1.52997 * 109.47204 * 60.00424 * 8 7 6 28 28 C 1.53001 * 109.46912 * 299.99487 * 27 8 7 29 29 H 1.08998 * 109.47297 * 239.99296 * 1 2 3 30 30 H 1.08998 * 109.47015 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46720 * 119.99922 * 1 2 3 32 32 H 0.97003 * 119.99309 * 359.97438 * 4 2 1 33 33 H 1.09003 * 109.47006 * 34.99371 * 5 4 2 34 34 H 1.08999 * 109.46717 * 59.99918 * 6 5 4 35 35 H 1.09004 * 109.46700 * 299.99938 * 6 5 4 36 36 H 1.08996 * 109.47144 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47333 * 59.99704 * 7 6 5 38 38 H 1.08999 * 109.47479 * 300.00402 * 8 7 6 39 39 H 1.09000 * 109.46789 * 84.48659 * 10 9 8 40 40 H 1.09006 * 109.47306 * 204.48604 * 10 9 8 41 41 H 1.08998 * 109.47189 * 324.48206 * 10 9 8 42 42 H 1.08002 * 119.94608 * 359.97438 * 14 13 11 43 43 H 1.08002 * 120.06052 * 180.25262 * 15 14 13 44 44 H 0.96999 * 119.99629 * 179.97438 * 20 19 17 45 45 H 1.07994 * 120.05101 * 179.97438 * 25 16 15 46 46 H 1.07997 * 119.94651 * 179.97438 * 26 25 16 47 47 H 1.08998 * 109.47607 * 59.99333 * 27 8 7 48 48 H 1.09006 * 109.47501 * 180.02562 * 27 8 7 49 49 H 1.08999 * 109.47449 * 299.99825 * 28 27 8 50 50 H 1.09005 * 109.47009 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1557 -2.4749 0.6090 7 6 5.6858 -2.4746 0.6102 8 6 6.1967 -2.3477 -0.8264 9 7 7.6617 -2.3481 -0.8254 10 6 8.3940 -1.3096 -0.0963 11 6 8.3359 -3.3037 -1.4953 12 8 7.7312 -4.1149 -2.1696 13 6 9.8085 -3.3656 -1.4102 14 6 10.4700 -2.7811 -0.3235 15 6 11.8291 -2.8406 -0.2377 16 6 12.5692 -3.4811 -1.2511 17 6 13.9767 -3.5395 -1.1704 18 1 14.5682 -3.5797 -2.0731 19 6 14.6075 -3.5453 0.0820 20 7 13.8995 -3.6983 1.1693 21 14 16.4601 -3.3340 0.1957 22 1 16.7873 -1.8904 0.3146 23 1 16.9683 -4.0567 1.3893 24 1 17.0973 -3.8870 -1.0264 25 6 11.8994 -4.0629 -2.3457 26 6 10.5396 -4.0033 -2.4199 27 6 5.6870 -1.0400 -1.4354 28 6 4.1569 -1.0403 -1.4365 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6959 -2.0072 -0.0005 33 1 4.0090 -0.3257 0.5901 34 1 3.7926 -3.3163 0.0189 35 1 3.7920 -2.5650 1.6326 36 1 6.0489 -3.4064 1.0436 37 1 6.0485 -1.6331 1.2005 38 1 5.8339 -3.1891 -1.4168 39 1 8.4893 -1.5991 0.9502 40 1 9.3859 -1.1904 -0.5322 41 1 7.8515 -0.3666 -0.1645 42 1 9.9022 -2.2857 0.4503 43 1 12.3382 -2.3930 0.6030 44 1 14.3359 -3.7027 2.0356 45 1 12.4626 -4.5546 -3.1251 46 1 10.0254 -4.4486 -3.2587 47 1 6.0496 -0.1986 -0.8451 48 1 6.0506 -0.9498 -2.4590 49 1 3.7942 -1.8817 -2.0269 50 1 3.7938 -0.1084 -1.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344509153.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:23 Heat of formation + Delta-G solvation = -53.120997 kcal Electronic energy + Delta-G solvation = -29803.603327 eV Core-core repulsion = 25795.190437 eV Total energy + Delta-G solvation = -4008.412890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.41790 -39.61918 -38.06107 -36.95977 -35.27253 -33.99217 -33.44710 -30.99440 -30.94119 -29.96080 -29.51601 -28.06012 -26.60879 -25.70287 -23.01734 -22.80591 -21.33374 -21.02117 -20.75105 -19.77654 -18.88354 -17.49417 -17.16889 -16.71829 -16.29025 -16.09078 -15.58509 -15.43270 -14.82258 -14.61284 -14.28244 -14.12541 -13.96889 -13.64083 -13.30964 -13.07310 -13.05002 -12.91621 -12.75008 -12.61137 -12.46821 -12.32993 -12.20516 -11.90894 -11.68584 -11.43620 -11.39212 -11.31483 -11.28641 -11.18123 -10.81006 -10.60333 -10.55081 -10.41101 -10.11901 -9.98013 -9.45108 -9.38374 -9.30767 -8.88961 -8.22115 -7.64906 -7.47047 -6.94595 -4.59922 2.24568 2.35805 2.89682 2.93979 2.96791 3.00041 3.01777 3.50102 3.76521 3.82049 4.39161 4.51827 4.54347 4.59773 4.85364 4.89404 4.95725 4.97910 5.07751 5.24443 5.28349 5.31288 5.39916 5.46262 5.51301 5.58518 5.62047 5.68359 5.79471 5.83299 5.93711 5.96986 6.01521 6.11466 6.18267 6.22119 6.27347 6.30741 6.37095 6.78756 6.86166 6.95522 7.09106 7.15406 7.21001 7.46793 7.61581 7.80652 7.87976 7.94289 8.06769 8.11398 8.43347 8.66465 8.76952 8.99858 9.97009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.001956 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.414078 B =14307.905196 C =14761.667613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.546 6.546 4 N -0.728 5.728 5 C 0.142 3.858 6 C -0.121 4.121 7 C -0.124 4.124 8 C 0.141 3.859 9 N -0.618 5.618 10 C 0.068 3.932 11 C 0.574 3.426 12 O -0.573 6.573 13 C -0.276 4.276 14 C -0.088 4.088 15 C -0.173 4.173 16 C 0.127 3.873 17 C -0.447 4.447 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.783 5.783 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.234 4.234 26 C -0.028 4.028 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.400 0.600 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.285 0.715 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.243 5.086 2.534 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.295 3.705 3 O -0.423 6.423 4 N -0.379 5.379 5 C 0.038 3.962 6 C -0.160 4.160 7 C -0.163 4.163 8 C 0.038 3.962 9 N -0.350 5.350 10 C -0.075 4.075 11 C 0.370 3.630 12 O -0.454 6.454 13 C -0.280 4.280 14 C -0.106 4.106 15 C -0.193 4.193 16 C 0.124 3.876 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.147 4.147 20 N -0.407 5.407 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.253 4.253 26 C -0.047 4.047 27 C -0.164 4.164 28 C -0.162 4.162 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.085 5.405 2.453 19.987 hybrid contribution 0.605 -0.405 0.281 0.780 sum -18.480 5.000 2.734 19.339 Atomic orbital electron populations 1.21927 0.91831 1.05509 1.04192 1.20828 0.90583 0.83609 0.75442 1.90738 1.70864 1.31409 1.49295 1.46167 1.07452 1.08689 1.75636 1.21064 0.78903 0.99151 0.97060 1.21751 0.96269 0.96684 1.01254 1.21830 0.93981 1.03057 0.97433 1.20948 0.80534 0.98818 0.95947 1.47675 1.05131 1.29179 1.53032 1.22432 0.98844 0.90125 0.96077 1.18733 0.88192 0.79048 0.77045 1.90620 1.70650 1.41578 1.42597 1.18891 0.90025 1.16976 1.02125 1.21363 0.95404 0.97466 0.96386 1.21087 0.92464 1.03874 1.01830 1.17837 0.93405 0.86119 0.90217 1.19809 0.92009 1.42534 0.93198 0.89942 1.26058 1.01456 0.92030 0.95204 1.69714 1.38455 1.33099 0.99438 0.86174 0.81321 0.79478 0.79038 1.19069 1.20067 1.18408 1.20758 0.93289 1.08701 1.02557 1.20340 0.93751 0.94692 0.95938 1.21836 0.94501 0.98069 1.01948 1.21854 0.95572 1.02527 0.96290 0.89468 0.89039 0.89423 0.76607 0.89338 0.91103 0.91111 0.90886 0.91338 0.88333 0.92869 0.88124 0.92600 0.86687 0.85949 0.90426 0.88431 0.88428 0.91387 0.91148 0.91578 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.32 36.00 0.37 -0.48 16 2 C 0.51 4.63 7.90 -10.99 -0.09 4.54 16 3 O -0.55 -7.61 16.75 5.55 0.09 -7.52 16 4 N -0.73 -5.39 5.08 -53.81 -0.27 -5.66 16 5 C 0.14 1.32 2.45 -67.93 -0.17 1.15 16 6 C -0.12 -1.02 5.39 -26.73 -0.14 -1.17 16 7 C -0.12 -1.37 5.20 -26.73 -0.14 -1.51 16 8 C 0.14 1.93 2.52 -67.93 -0.17 1.76 16 9 N -0.62 -10.22 2.76 -175.12 -0.48 -10.70 16 10 C 0.07 0.97 7.75 59.85 0.46 1.43 16 11 C 0.57 12.09 7.51 -12.42 -0.09 12.00 16 12 O -0.57 -13.49 15.88 5.29 0.08 -13.40 16 13 C -0.28 -6.23 5.58 -104.73 -0.58 -6.82 16 14 C -0.09 -1.91 7.47 -39.61 -0.30 -2.20 16 15 C -0.17 -4.19 8.60 -39.27 -0.34 -4.53 16 16 C 0.13 3.23 5.55 -106.80 -0.59 2.64 16 17 C -0.45 -11.15 9.05 -37.75 -0.34 -11.49 16 18 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 19 C 0.07 1.69 5.26 -17.31 -0.09 1.60 16 20 N -0.78 -18.91 10.82 55.56 0.60 -18.31 16 21 Si 0.92 17.49 29.57 -169.99 -5.03 12.46 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 25 C -0.23 -5.64 9.73 -39.27 -0.38 -6.02 16 26 C -0.03 -0.66 9.52 -39.61 -0.38 -1.03 16 27 C -0.12 -1.49 5.17 -26.73 -0.14 -1.63 16 28 C -0.12 -1.27 5.50 -26.73 -0.15 -1.42 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.40 1.79 8.60 -40.82 -0.35 1.44 16 33 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.72 7.67 -51.93 -0.40 0.33 16 38 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 39 H 0.05 0.71 7.18 -51.93 -0.37 0.33 16 40 H 0.10 1.62 4.95 -51.93 -0.26 1.36 16 41 H 0.06 0.66 6.46 -51.93 -0.34 0.33 16 42 H 0.12 2.15 4.14 -52.49 -0.22 1.93 16 43 H 0.12 3.01 6.20 -52.49 -0.33 2.69 16 44 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 45 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 46 H 0.10 2.21 7.80 -52.49 -0.41 1.80 16 47 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -31.23 394.33 -9.86 -41.09 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.54 Total: 9.28 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -3.25 Total: -13.17 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.16 Total: -34.68 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.18 Total: -20.92 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.23 -9.86 -41.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344509153.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.033 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds