Wall clock time and date at job start Wed Apr 1 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 119.99862 * 2 1 4 4 N 1.34777 * 120.00493 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00741 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47662 * 154.99704 * 5 4 2 7 7 C 1.53001 * 109.47273 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46768 * 299.99783 * 7 6 5 9 9 N 1.46502 * 109.46915 * 180.02562 * 8 7 6 10 10 C 1.46500 * 119.99994 * 299.99974 * 9 8 7 11 11 C 1.34776 * 120.00050 * 120.00093 * 9 8 7 12 12 O 1.21587 * 119.99663 * 4.66929 * 11 9 8 13 13 C 1.47641 * 120.00063 * 184.67210 * 11 9 8 14 14 C 1.40010 * 119.89761 * 22.27422 * 13 11 9 15 15 C 1.36311 * 120.10908 * 179.71892 * 14 13 11 16 16 C 1.40892 * 119.89187 * 0.57716 * 15 14 13 17 17 C 1.41105 * 120.10788 * 179.67686 * 16 15 14 18 18 H 1.07995 * 120.00373 * 209.03640 * 17 16 15 19 19 C 1.40234 * 119.99922 * 29.03301 * 17 16 15 20 20 N 1.30649 * 119.99731 * 10.23688 * 19 17 16 21 21 Si 1.86798 * 119.99930 * 190.24191 * 19 17 16 22 22 H 1.48501 * 109.47099 * 89.99976 * 21 19 17 23 23 H 1.48503 * 109.46969 * 209.99690 * 21 19 17 24 24 H 1.48500 * 109.47275 * 329.99724 * 21 19 17 25 25 C 1.40897 * 119.78965 * 359.69424 * 16 15 14 26 26 C 1.36314 * 119.89257 * 0.02562 * 25 16 15 27 27 C 1.52997 * 109.47204 * 60.00424 * 8 7 6 28 28 C 1.53001 * 109.46912 * 299.99487 * 27 8 7 29 29 H 1.08998 * 109.47297 * 239.99296 * 1 2 3 30 30 H 1.08998 * 109.47015 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46720 * 119.99922 * 1 2 3 32 32 H 0.97003 * 119.99309 * 359.97438 * 4 2 1 33 33 H 1.09003 * 109.47006 * 34.99371 * 5 4 2 34 34 H 1.08999 * 109.46717 * 59.99918 * 6 5 4 35 35 H 1.09004 * 109.46700 * 299.99938 * 6 5 4 36 36 H 1.08996 * 109.47144 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47333 * 59.99704 * 7 6 5 38 38 H 1.08999 * 109.47479 * 300.00402 * 8 7 6 39 39 H 1.09000 * 109.46789 * 84.48659 * 10 9 8 40 40 H 1.09006 * 109.47306 * 204.48604 * 10 9 8 41 41 H 1.08998 * 109.47189 * 324.48206 * 10 9 8 42 42 H 1.08002 * 119.94608 * 359.97438 * 14 13 11 43 43 H 1.08002 * 120.06052 * 180.25262 * 15 14 13 44 44 H 0.96999 * 119.99629 * 179.97438 * 20 19 17 45 45 H 1.07994 * 120.05101 * 179.97438 * 25 16 15 46 46 H 1.07997 * 119.94651 * 179.97438 * 26 25 16 47 47 H 1.08998 * 109.47607 * 59.99333 * 27 8 7 48 48 H 1.09006 * 109.47501 * 180.02562 * 27 8 7 49 49 H 1.08999 * 109.47449 * 299.99825 * 28 27 8 50 50 H 1.09005 * 109.47009 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1557 -2.4749 0.6090 7 6 5.6858 -2.4746 0.6102 8 6 6.1967 -2.3477 -0.8264 9 7 7.6617 -2.3481 -0.8254 10 6 8.3940 -1.3096 -0.0963 11 6 8.3359 -3.3037 -1.4953 12 8 7.7312 -4.1149 -2.1696 13 6 9.8085 -3.3656 -1.4102 14 6 10.4700 -2.7811 -0.3235 15 6 11.8291 -2.8406 -0.2377 16 6 12.5692 -3.4811 -1.2511 17 6 13.9767 -3.5395 -1.1704 18 1 14.5682 -3.5797 -2.0731 19 6 14.6075 -3.5453 0.0820 20 7 13.8995 -3.6983 1.1693 21 14 16.4601 -3.3340 0.1957 22 1 16.7873 -1.8904 0.3146 23 1 16.9683 -4.0567 1.3893 24 1 17.0973 -3.8870 -1.0264 25 6 11.8994 -4.0629 -2.3457 26 6 10.5396 -4.0033 -2.4199 27 6 5.6870 -1.0400 -1.4354 28 6 4.1569 -1.0403 -1.4365 29 1 -0.3634 -0.5139 0.8899 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6959 -2.0072 -0.0005 33 1 4.0090 -0.3257 0.5901 34 1 3.7926 -3.3163 0.0189 35 1 3.7920 -2.5650 1.6326 36 1 6.0489 -3.4064 1.0436 37 1 6.0485 -1.6331 1.2005 38 1 5.8339 -3.1891 -1.4168 39 1 8.4893 -1.5991 0.9502 40 1 9.3859 -1.1904 -0.5322 41 1 7.8515 -0.3666 -0.1645 42 1 9.9022 -2.2857 0.4503 43 1 12.3382 -2.3930 0.6030 44 1 14.3359 -3.7027 2.0356 45 1 12.4626 -4.5546 -3.1251 46 1 10.0254 -4.4486 -3.2587 47 1 6.0496 -0.1986 -0.8451 48 1 6.0506 -0.9498 -2.4590 49 1 3.7942 -1.8817 -2.0269 50 1 3.7938 -0.1084 -1.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344509153.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:22 Heat of formation + Delta-G solvation = -71.355392 kcal Electronic energy + Delta-G solvation = -29804.394030 eV Core-core repulsion = 25795.190437 eV Total energy + Delta-G solvation = -4009.203593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.52957 -40.75507 -39.35423 -38.53360 -36.53242 -35.66620 -34.55797 -32.24622 -31.86263 -31.36705 -30.97891 -29.03007 -28.04800 -27.29118 -24.18666 -23.83475 -22.80792 -22.69228 -21.49414 -20.87253 -20.32939 -19.31274 -18.03228 -17.73287 -17.60490 -17.40608 -17.06643 -16.34964 -16.13210 -15.95993 -15.59479 -15.17157 -15.10501 -14.82830 -14.71397 -14.45627 -14.28743 -14.08019 -13.92640 -13.66937 -13.59435 -13.34969 -13.25011 -13.22281 -12.99242 -12.89748 -12.82086 -12.56509 -12.36748 -12.31550 -12.21448 -12.13201 -11.73043 -11.56266 -11.38782 -11.17816 -11.15419 -10.90204 -10.56223 -10.05584 -9.63440 -9.47811 -9.29215 -8.71279 -6.48377 0.46649 1.14034 1.39980 1.43463 1.53374 1.68639 2.06371 2.12082 2.18698 2.34254 2.77258 3.57483 3.65309 3.69455 3.87840 3.97417 4.08383 4.11499 4.17459 4.19242 4.38058 4.39791 4.41805 4.44503 4.51439 4.56098 4.64914 4.68642 4.70736 4.72321 4.90599 4.96310 4.98907 5.04588 5.05608 5.09560 5.09904 5.14800 5.17732 5.30832 5.31751 5.35335 5.54390 5.60726 5.69572 5.84211 5.98026 6.01933 6.25284 6.51096 6.57672 6.63180 6.80724 6.90788 7.32324 7.36846 8.23181 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.001956 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.414078 B =14307.905196 C =14761.667613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.502 3.498 3 O -0.601 6.601 4 N -0.715 5.715 5 C 0.147 3.853 6 C -0.110 4.110 7 C -0.119 4.119 8 C 0.139 3.861 9 N -0.608 5.608 10 C 0.062 3.938 11 C 0.570 3.430 12 O -0.605 6.605 13 C -0.283 4.283 14 C -0.075 4.075 15 C -0.192 4.192 16 C 0.099 3.901 17 C -0.479 4.479 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.810 5.810 21 Si 0.989 3.011 22 H -0.258 1.258 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.248 4.248 26 C -0.040 4.040 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.417 0.583 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.116 0.884 44 H 0.294 0.706 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.790 5.502 4.121 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.291 3.709 3 O -0.483 6.483 4 N -0.367 5.367 5 C 0.042 3.958 6 C -0.149 4.149 7 C -0.157 4.157 8 C 0.036 3.964 9 N -0.339 5.339 10 C -0.080 4.080 11 C 0.365 3.635 12 O -0.489 6.489 13 C -0.288 4.288 14 C -0.093 4.093 15 C -0.211 4.211 16 C 0.096 3.904 17 C -0.507 4.507 18 H 0.100 0.900 19 C -0.182 4.182 20 N -0.435 5.435 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.184 1.184 25 C -0.267 4.267 26 C -0.059 4.059 27 C -0.156 4.156 28 C -0.155 4.155 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.166 0.834 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.688 5.811 4.059 21.868 hybrid contribution 0.953 -0.519 -0.231 1.109 sum -19.735 5.292 3.828 20.788 Atomic orbital electron populations 1.21929 0.88314 1.05874 1.06444 1.21621 0.92287 0.82940 0.74050 1.90717 1.72233 1.33362 1.51967 1.46046 1.06704 1.09337 1.74611 1.20876 0.80115 0.98969 0.95815 1.21670 0.94201 0.96390 1.02593 1.21775 0.95826 1.03006 0.95143 1.21142 0.78532 0.98865 0.97812 1.47700 1.06551 1.28081 1.51543 1.22539 0.98219 0.90797 0.96429 1.18550 0.87650 0.79795 0.77532 1.90597 1.70984 1.43159 1.44156 1.19197 0.91342 1.16308 1.01913 1.21662 0.94739 0.96269 0.96613 1.21110 0.93441 1.04795 1.01766 1.18194 0.94262 0.86874 0.91034 1.20051 0.92203 1.44290 0.94188 0.90016 1.26880 1.06079 0.90986 0.94262 1.69746 1.40517 1.33048 1.00144 0.85085 0.75206 0.79681 0.79100 1.18266 1.19106 1.18357 1.20883 0.93723 1.09276 1.02829 1.20493 0.93730 0.95118 0.96565 1.21747 0.95712 0.97235 1.00913 1.21766 0.94217 1.02152 0.97336 0.86937 0.89704 0.87196 0.74531 0.90982 0.90146 0.89111 0.91712 0.90373 0.90385 0.90982 0.89864 0.89578 0.83422 0.86630 0.89489 0.87958 0.88234 0.90689 0.92761 0.91015 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.32 71.24 0.74 -0.41 16 2 C 0.50 8.23 7.90 87.66 0.69 8.92 16 3 O -0.60 -16.49 16.75 -3.04 -0.05 -16.54 16 4 N -0.72 -8.78 5.08 -442.54 -2.25 -11.03 16 5 C 0.15 2.42 2.45 44.99 0.11 2.53 16 6 C -0.11 -1.55 5.39 30.59 0.16 -1.38 16 7 C -0.12 -2.35 5.20 30.59 0.16 -2.19 16 8 C 0.14 3.64 2.52 44.99 0.11 3.75 16 9 N -0.61 -19.54 2.76 -826.22 -2.28 -21.82 16 10 C 0.06 1.64 7.75 127.77 0.99 2.63 16 11 C 0.57 24.10 7.51 86.73 0.65 24.75 16 12 O -0.60 -28.90 15.88 -3.99 -0.06 -28.96 16 13 C -0.28 -12.96 5.58 -19.93 -0.11 -13.08 16 14 C -0.07 -3.25 7.47 22.25 0.17 -3.09 16 15 C -0.19 -9.46 8.60 22.47 0.19 -9.27 16 16 C 0.10 5.21 5.55 -21.28 -0.12 5.09 16 17 C -0.48 -24.53 9.05 23.46 0.21 -24.32 16 18 H 0.08 4.03 7.87 -2.91 -0.02 4.00 16 19 C 0.04 1.65 5.26 85.35 0.45 2.10 16 20 N -0.81 -39.35 10.82 21.87 0.24 -39.12 16 21 Si 0.99 35.56 29.57 68.60 2.03 37.59 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 23 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 24 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 25 C -0.25 -12.42 9.73 22.47 0.22 -12.20 16 26 C -0.04 -1.93 9.52 22.25 0.21 -1.72 16 27 C -0.12 -2.68 5.17 30.59 0.16 -2.52 16 28 C -0.12 -2.24 5.50 30.60 0.17 -2.07 16 29 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.42 2.29 8.60 -92.71 -0.80 1.49 16 33 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.42 7.67 -2.39 -0.02 1.40 16 38 H 0.08 2.41 6.91 -2.39 -0.02 2.39 16 39 H 0.07 1.70 7.18 -2.39 -0.02 1.68 16 40 H 0.08 2.57 4.95 -2.38 -0.01 2.56 16 41 H 0.09 1.82 6.46 -2.39 -0.02 1.80 16 42 H 0.15 5.32 4.14 -2.91 -0.01 5.31 16 43 H 0.12 5.80 6.20 -2.91 -0.02 5.78 16 44 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 45 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 46 H 0.10 4.68 7.80 -2.91 -0.02 4.66 16 47 H 0.07 1.61 6.70 -2.39 -0.02 1.59 16 48 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 49 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 50 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -70.94 394.33 2.96 -67.99 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.17 Total: 34.37 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 5.17 Total: -22.47 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -4.29 Total: -71.97 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.11 Total: -45.50 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Total: -70.94 2.96 -67.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344509153.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.368 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds