Wall clock time and date at job start Wed Apr 1 2020 03:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99743 * 2 1 4 4 N 1.34779 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99474 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47069 * 179.97438 * 5 4 2 7 7 C 1.52989 * 109.47521 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.52544 * 304.92434 * 7 6 5 9 9 C 1.53044 * 109.49933 * 184.83757 * 7 6 5 10 10 C 1.53039 * 109.53632 * 178.68408 * 9 7 6 11 11 C 1.53197 * 109.31593 * 61.37020 * 10 9 7 12 12 N 1.46928 * 108.76871 * 305.36575 * 11 10 9 13 13 C 1.34784 * 120.62642 * 233.58290 * 12 11 10 14 14 O 1.21579 * 120.00108 * 174.18678 * 13 12 11 15 15 C 1.47640 * 119.99608 * 354.18403 * 13 12 11 16 16 C 1.40004 * 119.90130 * 323.59319 * 15 13 12 17 17 C 1.36319 * 120.11128 * 179.76031 * 16 15 13 18 18 C 1.40893 * 119.88844 * 0.51522 * 17 16 15 19 19 C 1.41100 * 120.10325 * 179.71528 * 18 17 16 20 20 H 1.08003 * 120.00339 * 158.20794 * 19 18 17 21 21 C 1.40229 * 120.00095 * 338.21018 * 19 18 17 22 22 N 1.30640 * 120.00078 * 343.24967 * 21 19 18 23 23 Si 1.86802 * 120.00085 * 163.24854 * 21 19 18 24 24 H 1.48501 * 109.47122 * 94.62355 * 23 21 19 25 25 H 1.48501 * 109.47404 * 214.62478 * 23 21 19 26 26 H 1.48506 * 109.47224 * 334.62882 * 23 21 19 27 27 C 1.40883 * 119.79185 * 359.74199 * 18 17 16 28 28 C 1.36323 * 119.89426 * 359.97438 * 27 18 17 29 29 C 1.46924 * 118.74615 * 53.60783 * 12 11 10 30 30 H 1.08999 * 109.47155 * 270.00017 * 1 2 3 31 31 H 1.09000 * 109.47231 * 29.99904 * 1 2 3 32 32 H 1.08999 * 109.47398 * 149.99746 * 1 2 3 33 33 H 0.96993 * 119.99762 * 0.02562 * 4 2 1 34 34 H 1.09004 * 109.47525 * 60.00291 * 5 4 2 35 35 H 1.09001 * 109.47736 * 300.00046 * 5 4 2 36 36 H 1.09004 * 109.46646 * 59.99830 * 6 5 4 37 37 H 1.09001 * 109.46942 * 300.00610 * 6 5 4 38 38 H 1.08992 * 109.46078 * 298.70424 * 9 7 6 39 39 H 1.09002 * 109.45752 * 58.66591 * 9 7 6 40 40 H 1.09006 * 109.50204 * 301.41518 * 10 9 7 41 41 H 1.09001 * 109.49976 * 181.31897 * 10 9 7 42 42 H 1.08994 * 109.58802 * 185.57574 * 11 10 9 43 43 H 1.09001 * 109.58562 * 65.14646 * 11 10 9 44 44 H 1.08002 * 119.94587 * 0.02683 * 16 15 13 45 45 H 1.07998 * 120.05727 * 180.23454 * 17 16 15 46 46 H 0.96998 * 119.99987 * 180.02562 * 22 21 19 47 47 H 1.07996 * 120.05440 * 179.97438 * 27 18 17 48 48 H 1.07995 * 119.94402 * 180.02562 * 28 27 18 49 49 H 1.08996 * 109.58499 * 186.60323 * 29 12 11 50 50 H 1.08994 * 109.58414 * 66.17251 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0023 7 6 5.6858 -2.6097 0.0022 8 1 6.0501 -2.0223 -0.8406 9 6 6.1966 -4.0474 -0.1183 10 6 7.7266 -4.0457 -0.1515 11 6 8.2612 -3.4507 1.1551 12 7 7.6604 -2.1243 1.3512 13 6 8.4369 -1.0436 1.5647 14 8 7.9366 0.0631 1.6201 15 6 9.8951 -1.2037 1.7315 16 6 10.4019 -2.3210 2.4059 17 6 11.7478 -2.4757 2.5581 18 6 12.6287 -1.5033 2.0447 19 6 14.0222 -1.6558 2.2049 20 1 14.7017 -1.1398 1.5425 21 6 14.5252 -2.4773 3.2240 22 7 13.7528 -2.8363 4.2145 23 14 16.2995 -3.0584 3.1651 24 1 17.1486 -2.1379 3.9633 25 1 16.3904 -4.4293 3.7286 26 1 16.7703 -3.0698 1.7567 27 6 12.1137 -0.3780 1.3715 28 6 10.7666 -0.2349 1.2192 29 6 6.1971 -1.9984 1.3106 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6958 -2.0072 0.0005 34 1 4.0089 -0.6532 0.8911 35 1 4.0096 -0.6535 -0.8888 36 1 3.7928 -3.1241 -0.8876 37 1 3.7921 -3.1229 0.8924 38 1 5.8526 -4.6279 0.7376 39 1 5.8139 -4.4929 -1.0366 40 1 8.0718 -3.4448 -0.9929 41 1 8.0893 -5.0678 -0.2608 42 1 9.3454 -3.3559 1.0968 43 1 7.9934 -4.1000 1.9888 44 1 9.7257 -3.0638 2.8026 45 1 12.1379 -3.3398 3.0752 46 1 14.1008 -3.4043 4.9196 47 1 12.7851 0.3702 0.9766 48 1 10.3710 0.6272 0.7029 49 1 5.9197 -0.9452 1.3548 50 1 5.7611 -2.5292 2.1568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345905594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:38 Heat of formation + Delta-G solvation = -70.174148 kcal Electronic energy + Delta-G solvation = -29603.461800 eV Core-core repulsion = 25594.309430 eV Total energy + Delta-G solvation = -4009.152370 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.07253 -39.63955 -37.84414 -36.85964 -35.54606 -33.97491 -33.39085 -31.88883 -30.64514 -30.03728 -29.46681 -27.88257 -26.31946 -24.79781 -23.95468 -21.84034 -21.55239 -20.96578 -20.84932 -20.04762 -18.73798 -17.52578 -17.03482 -16.58626 -16.20341 -16.12919 -15.69185 -15.39232 -15.00261 -14.53929 -14.17070 -14.12400 -13.97778 -13.69549 -13.58531 -13.32108 -13.06528 -12.97335 -12.77179 -12.58018 -12.48740 -12.29583 -12.08746 -11.89413 -11.86402 -11.56714 -11.28884 -11.21082 -11.09127 -10.99752 -10.84665 -10.70379 -10.44571 -10.40432 -10.08105 -10.05426 -9.55187 -9.33357 -9.30817 -8.89376 -8.20741 -7.64200 -7.52707 -6.99413 -4.58090 2.31382 2.41792 2.91963 2.94773 2.96209 3.01036 3.02270 3.50967 3.74210 3.78014 4.43990 4.48092 4.52925 4.63013 4.75529 4.86214 4.99117 5.02637 5.04928 5.20021 5.22658 5.38337 5.44617 5.50395 5.53297 5.61051 5.66885 5.71077 5.75086 5.83019 5.87424 5.99549 6.08997 6.12473 6.16088 6.18180 6.25482 6.31309 6.37534 6.79114 6.83944 6.96665 7.09448 7.17773 7.23086 7.45013 7.63871 7.85357 7.87651 7.99066 8.06795 8.11865 8.42681 8.66336 8.77691 9.00912 9.90207 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.002021 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.078203 B =13852.176083 C =14549.628057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.543 6.543 4 N -0.732 5.732 5 C 0.112 3.888 6 C -0.121 4.121 7 C -0.099 4.099 8 H 0.078 0.922 9 C -0.111 4.111 10 C -0.136 4.136 11 C 0.098 3.902 12 N -0.618 5.618 13 C 0.576 3.424 14 O -0.567 6.567 15 C -0.280 4.280 16 C -0.069 4.069 17 C -0.181 4.181 18 C 0.124 3.876 19 C -0.442 4.442 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.774 5.774 23 Si 0.913 3.087 24 H -0.268 1.268 25 H -0.273 1.273 26 H -0.258 1.258 27 C -0.237 4.237 28 C -0.028 4.028 29 C 0.115 3.885 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.285 0.715 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.534 -8.431 -6.576 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.291 3.709 3 O -0.420 6.420 4 N -0.385 5.385 5 C -0.012 4.012 6 C -0.159 4.159 7 C -0.119 4.119 8 H 0.096 0.904 9 C -0.148 4.148 10 C -0.174 4.174 11 C -0.025 4.025 12 N -0.352 5.352 13 C 0.371 3.629 14 O -0.447 6.447 15 C -0.284 4.284 16 C -0.088 4.088 17 C -0.200 4.200 18 C 0.121 3.879 19 C -0.469 4.469 20 H 0.101 0.899 21 C -0.147 4.147 22 N -0.397 5.397 23 Si 0.736 3.264 24 H -0.193 1.193 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.257 4.257 28 C -0.047 4.047 29 C -0.008 4.008 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.145 0.855 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.339 -7.198 -6.300 20.684 hybrid contribution 0.480 -0.828 0.171 0.972 sum -17.859 -8.025 -6.129 20.516 Atomic orbital electron populations 1.21880 0.91765 1.04766 1.04747 1.20843 0.90621 0.83590 0.75803 1.90771 1.70802 1.31397 1.49025 1.46124 1.07723 1.08657 1.75975 1.21507 0.79057 0.97442 1.03157 1.21779 0.95781 0.95582 1.02763 1.21466 0.93481 0.97496 0.99408 0.90372 1.21545 0.96008 0.95555 1.01719 1.21952 0.95296 1.01263 0.98909 1.22159 1.01090 0.83232 0.96033 1.47934 1.05455 1.08415 1.73349 1.18778 0.87352 0.82747 0.73978 1.90650 1.75791 1.25268 1.53026 1.18828 0.90014 1.02274 1.17282 1.20624 0.95695 0.95089 0.97370 1.21143 0.91600 1.01136 1.06150 1.17777 0.93415 0.89109 0.87624 1.19831 0.92491 1.22683 1.11940 0.89872 1.26103 1.00739 0.93944 0.93932 1.69736 1.37856 1.25487 1.06627 0.86211 0.81327 0.78739 0.80073 1.19270 1.19767 1.18131 1.20664 0.93844 0.99895 1.11274 1.20272 0.93088 0.95337 0.96023 1.21555 0.81014 1.02450 0.95754 0.88882 0.88930 0.90297 0.76680 0.90850 0.91297 0.91051 0.91064 0.91879 0.91995 0.91456 0.90879 0.86971 0.92304 0.88580 0.85527 0.90323 0.88502 0.88701 0.89097 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.30 36.01 0.37 -0.57 16 2 C 0.50 5.18 7.94 -10.98 -0.09 5.09 16 3 O -0.54 -8.62 17.10 5.56 0.10 -8.53 16 4 N -0.73 -5.89 5.56 -60.29 -0.33 -6.22 16 5 C 0.11 1.12 5.43 -4.04 -0.02 1.10 16 6 C -0.12 -0.93 4.80 -26.74 -0.13 -1.06 16 7 C -0.10 -1.04 2.34 -90.50 -0.21 -1.25 16 8 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.11 -1.04 5.17 -26.69 -0.14 -1.18 16 10 C -0.14 -1.55 6.08 -26.61 -0.16 -1.71 16 11 C 0.10 1.40 4.78 -3.71 -0.02 1.39 16 12 N -0.62 -10.49 2.97 -173.95 -0.52 -11.00 16 13 C 0.58 12.51 7.36 -12.42 -0.09 12.42 16 14 O -0.57 -13.97 16.25 5.30 0.09 -13.88 16 15 C -0.28 -6.41 5.28 -104.73 -0.55 -6.96 16 16 C -0.07 -1.53 7.28 -39.61 -0.29 -1.81 16 17 C -0.18 -4.40 8.66 -39.27 -0.34 -4.74 16 18 C 0.12 3.15 5.61 -106.81 -0.60 2.55 16 19 C -0.44 -10.97 9.06 -37.75 -0.34 -11.31 16 20 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 21 C 0.07 1.71 5.19 -17.31 -0.09 1.62 16 22 N -0.77 -18.53 10.70 55.56 0.59 -17.93 16 23 Si 0.91 17.22 29.59 -169.99 -5.03 12.19 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 26 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 27 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 28 C -0.03 -0.66 9.54 -39.61 -0.38 -1.04 16 29 C 0.12 1.61 5.33 -3.71 -0.02 1.59 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 34 H 0.07 0.91 6.70 -51.93 -0.35 0.56 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.11 1.86 4.52 -51.93 -0.23 1.63 16 43 H 0.06 0.76 8.05 -51.93 -0.42 0.35 16 44 H 0.10 1.88 6.13 -52.49 -0.32 1.56 16 45 H 0.13 3.12 5.89 -52.49 -0.31 2.81 16 46 H 0.29 6.14 8.29 -40.82 -0.34 5.81 16 47 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 48 H 0.09 2.17 8.00 -52.49 -0.42 1.75 16 49 H 0.09 1.47 5.71 -51.93 -0.30 1.18 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -32.24 398.81 -10.32 -42.56 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.74 Total: 8.84 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.48 Total: -12.02 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.26 Total: -35.16 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.18 Total: -22.41 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.24 -10.32 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345905594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.618 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds