Wall clock time and date at job start Wed Apr 1 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99743 * 2 1 4 4 N 1.34779 * 119.99778 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99474 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47069 * 179.97438 * 5 4 2 7 7 C 1.52989 * 109.47521 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.52544 * 304.92434 * 7 6 5 9 9 C 1.53044 * 109.49933 * 184.83757 * 7 6 5 10 10 C 1.53039 * 109.53632 * 178.68408 * 9 7 6 11 11 C 1.53197 * 109.31593 * 61.37020 * 10 9 7 12 12 N 1.46928 * 108.76871 * 305.36575 * 11 10 9 13 13 C 1.34784 * 120.62642 * 233.58290 * 12 11 10 14 14 O 1.21579 * 120.00108 * 174.18678 * 13 12 11 15 15 C 1.47640 * 119.99608 * 354.18403 * 13 12 11 16 16 C 1.40004 * 119.90130 * 323.59319 * 15 13 12 17 17 C 1.36319 * 120.11128 * 179.76031 * 16 15 13 18 18 C 1.40893 * 119.88844 * 0.51522 * 17 16 15 19 19 C 1.41100 * 120.10325 * 179.71528 * 18 17 16 20 20 H 1.08003 * 120.00339 * 158.20794 * 19 18 17 21 21 C 1.40229 * 120.00095 * 338.21018 * 19 18 17 22 22 N 1.30640 * 120.00078 * 343.24967 * 21 19 18 23 23 Si 1.86802 * 120.00085 * 163.24854 * 21 19 18 24 24 H 1.48501 * 109.47122 * 94.62355 * 23 21 19 25 25 H 1.48501 * 109.47404 * 214.62478 * 23 21 19 26 26 H 1.48506 * 109.47224 * 334.62882 * 23 21 19 27 27 C 1.40883 * 119.79185 * 359.74199 * 18 17 16 28 28 C 1.36323 * 119.89426 * 359.97438 * 27 18 17 29 29 C 1.46924 * 118.74615 * 53.60783 * 12 11 10 30 30 H 1.08999 * 109.47155 * 270.00017 * 1 2 3 31 31 H 1.09000 * 109.47231 * 29.99904 * 1 2 3 32 32 H 1.08999 * 109.47398 * 149.99746 * 1 2 3 33 33 H 0.96993 * 119.99762 * 0.02562 * 4 2 1 34 34 H 1.09004 * 109.47525 * 60.00291 * 5 4 2 35 35 H 1.09001 * 109.47736 * 300.00046 * 5 4 2 36 36 H 1.09004 * 109.46646 * 59.99830 * 6 5 4 37 37 H 1.09001 * 109.46942 * 300.00610 * 6 5 4 38 38 H 1.08992 * 109.46078 * 298.70424 * 9 7 6 39 39 H 1.09002 * 109.45752 * 58.66591 * 9 7 6 40 40 H 1.09006 * 109.50204 * 301.41518 * 10 9 7 41 41 H 1.09001 * 109.49976 * 181.31897 * 10 9 7 42 42 H 1.08994 * 109.58802 * 185.57574 * 11 10 9 43 43 H 1.09001 * 109.58562 * 65.14646 * 11 10 9 44 44 H 1.08002 * 119.94587 * 0.02683 * 16 15 13 45 45 H 1.07998 * 120.05727 * 180.23454 * 17 16 15 46 46 H 0.96998 * 119.99987 * 180.02562 * 22 21 19 47 47 H 1.07996 * 120.05440 * 179.97438 * 27 18 17 48 48 H 1.07995 * 119.94402 * 180.02562 * 28 27 18 49 49 H 1.08996 * 109.58499 * 186.60323 * 29 12 11 50 50 H 1.08994 * 109.58414 * 66.17251 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0023 7 6 5.6858 -2.6097 0.0022 8 1 6.0501 -2.0223 -0.8406 9 6 6.1966 -4.0474 -0.1183 10 6 7.7266 -4.0457 -0.1515 11 6 8.2612 -3.4507 1.1551 12 7 7.6604 -2.1243 1.3512 13 6 8.4369 -1.0436 1.5647 14 8 7.9366 0.0631 1.6201 15 6 9.8951 -1.2037 1.7315 16 6 10.4019 -2.3210 2.4059 17 6 11.7478 -2.4757 2.5581 18 6 12.6287 -1.5033 2.0447 19 6 14.0222 -1.6558 2.2049 20 1 14.7017 -1.1398 1.5425 21 6 14.5252 -2.4773 3.2240 22 7 13.7528 -2.8363 4.2145 23 14 16.2995 -3.0584 3.1651 24 1 17.1486 -2.1379 3.9633 25 1 16.3904 -4.4293 3.7286 26 1 16.7703 -3.0698 1.7567 27 6 12.1137 -0.3780 1.3715 28 6 10.7666 -0.2349 1.2192 29 6 6.1971 -1.9984 1.3106 30 1 -0.3633 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6958 -2.0072 0.0005 34 1 4.0089 -0.6532 0.8911 35 1 4.0096 -0.6535 -0.8888 36 1 3.7928 -3.1241 -0.8876 37 1 3.7921 -3.1229 0.8924 38 1 5.8526 -4.6279 0.7376 39 1 5.8139 -4.4929 -1.0366 40 1 8.0718 -3.4448 -0.9929 41 1 8.0893 -5.0678 -0.2608 42 1 9.3454 -3.3559 1.0968 43 1 7.9934 -4.1000 1.9888 44 1 9.7257 -3.0638 2.8026 45 1 12.1379 -3.3398 3.0752 46 1 14.1008 -3.4043 4.9196 47 1 12.7851 0.3702 0.9766 48 1 10.3710 0.6272 0.7029 49 1 5.9197 -0.9452 1.3548 50 1 5.7611 -2.5292 2.1568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345905594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:37 Heat of formation + Delta-G solvation = -90.247802 kcal Electronic energy + Delta-G solvation = -29604.332258 eV Core-core repulsion = 25594.309430 eV Total energy + Delta-G solvation = -4010.022829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.40850 -40.60880 -39.32449 -38.47493 -36.57124 -35.72140 -34.54552 -32.92544 -32.12374 -31.34939 -30.99189 -28.82373 -27.88581 -26.20982 -24.91420 -23.40417 -22.90591 -22.33454 -21.87072 -21.06206 -20.17621 -19.36808 -18.08049 -17.74516 -17.46554 -17.15173 -17.08315 -16.61171 -16.14442 -16.03297 -15.58844 -15.33580 -15.12171 -14.83954 -14.76013 -14.53291 -14.35534 -14.20613 -14.02660 -13.85565 -13.63663 -13.47726 -13.24664 -13.15893 -13.00937 -12.80712 -12.75789 -12.64047 -12.40636 -12.27264 -11.95732 -11.80046 -11.72367 -11.62857 -11.35713 -11.33667 -11.11901 -10.96271 -10.61876 -10.14272 -9.64368 -9.49853 -9.35164 -8.76235 -6.47239 0.51183 1.12321 1.39328 1.42981 1.55366 1.62790 1.98831 2.16745 2.18330 2.28852 2.70233 3.61227 3.65142 3.79205 3.84399 3.95844 4.01546 4.12413 4.21518 4.26522 4.30133 4.37421 4.40891 4.45041 4.52109 4.63125 4.65665 4.67543 4.80097 4.89475 4.91157 4.94207 4.98482 5.02880 5.05702 5.12660 5.14257 5.18636 5.22267 5.29108 5.31708 5.43598 5.49882 5.57668 5.69295 5.82777 5.98964 6.00374 6.22247 6.51289 6.55442 6.58770 6.78849 6.89636 7.28884 7.34208 8.16833 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.002021 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.078203 B =13852.176083 C =14549.628057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.494 3.506 3 O -0.612 6.612 4 N -0.714 5.714 5 C 0.112 3.888 6 C -0.103 4.103 7 C -0.092 4.092 8 H 0.055 0.945 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.090 3.910 12 N -0.609 5.609 13 C 0.569 3.431 14 O -0.609 6.609 15 C -0.288 4.288 16 C -0.054 4.054 17 C -0.198 4.198 18 C 0.097 3.903 19 C -0.472 4.472 20 H 0.084 0.916 21 C 0.037 3.963 22 N -0.800 5.800 23 Si 0.989 3.011 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.257 1.257 27 C -0.252 4.252 28 C -0.041 4.041 29 C 0.110 3.890 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.421 0.579 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.297 0.703 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.059 0.941 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.286 -12.307 -6.694 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.283 3.717 3 O -0.494 6.494 4 N -0.367 5.367 5 C -0.012 4.012 6 C -0.141 4.141 7 C -0.112 4.112 8 H 0.073 0.927 9 C -0.140 4.140 10 C -0.170 4.170 11 C -0.032 4.032 12 N -0.340 5.340 13 C 0.363 3.637 14 O -0.493 6.493 15 C -0.292 4.292 16 C -0.073 4.073 17 C -0.217 4.217 18 C 0.094 3.906 19 C -0.499 4.499 20 H 0.102 0.898 21 C -0.182 4.182 22 N -0.424 5.424 23 Si 0.808 3.192 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.180 1.180 27 C -0.271 4.271 28 C -0.060 4.060 29 C -0.012 4.012 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.133 0.867 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.108 0.892 47 H 0.120 0.880 48 H 0.112 0.888 49 H 0.078 0.922 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.152 -11.169 -6.430 23.921 hybrid contribution 0.944 0.374 0.220 1.039 sum -19.208 -10.794 -6.210 22.892 Atomic orbital electron populations 1.21890 0.87600 1.06353 1.06217 1.21823 0.92672 0.82927 0.74232 1.90745 1.72498 1.33869 1.52274 1.45981 1.06893 1.09346 1.74519 1.21349 0.80409 0.98895 1.00549 1.21680 0.93253 0.93876 1.05331 1.21407 0.95520 0.98093 0.96207 0.92667 1.21537 0.94046 0.94364 1.04051 1.21937 0.97096 1.01920 0.96059 1.22347 0.99732 0.82118 0.98962 1.47981 1.06658 1.08236 1.71151 1.18677 0.87258 0.83407 0.74335 1.90624 1.76331 1.27081 1.55268 1.19081 0.91018 1.02189 1.16912 1.20785 0.95359 0.95050 0.96067 1.21164 0.92358 1.01100 1.07120 1.18128 0.94366 0.89734 0.88372 1.20098 0.92474 1.24279 1.13050 0.89822 1.26949 1.05163 0.93222 0.92834 1.69755 1.39953 1.25530 1.07121 0.85087 0.75444 0.78602 0.80031 1.18822 1.18389 1.18015 1.20785 0.94195 1.00205 1.11949 1.20413 0.93282 0.95821 0.96461 1.21810 0.79035 1.01475 0.98917 0.87273 0.89364 0.86692 0.74044 0.93994 0.93793 0.88072 0.88656 0.89765 0.89294 0.93284 0.88325 0.89517 0.89825 0.85895 0.85969 0.89205 0.87989 0.88769 0.92247 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.30 71.24 0.73 -0.67 16 2 C 0.49 9.92 7.94 87.66 0.70 10.62 16 3 O -0.61 -20.54 17.10 -3.02 -0.05 -20.59 16 4 N -0.71 -10.34 5.56 -463.06 -2.57 -12.91 16 5 C 0.11 2.24 5.43 86.38 0.47 2.71 16 6 C -0.10 -1.27 4.80 30.59 0.15 -1.13 16 7 C -0.09 -1.77 2.34 -10.72 -0.03 -1.80 16 8 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 9 C -0.10 -1.49 5.17 30.62 0.16 -1.33 16 10 C -0.13 -2.65 6.08 30.67 0.19 -2.46 16 11 C 0.09 2.45 4.78 86.36 0.41 2.86 16 12 N -0.61 -20.62 2.97 -822.53 -2.44 -23.06 16 13 C 0.57 25.63 7.36 86.73 0.64 26.27 16 14 O -0.61 -31.72 16.25 -3.96 -0.06 -31.78 16 15 C -0.29 -13.67 5.28 -19.94 -0.11 -13.78 16 16 C -0.05 -2.43 7.28 22.25 0.16 -2.27 16 17 C -0.20 -9.88 8.66 22.47 0.19 -9.69 16 18 C 0.10 5.12 5.61 -21.28 -0.12 5.00 16 19 C -0.47 -24.05 9.06 23.46 0.21 -23.84 16 20 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 21 C 0.04 1.72 5.19 85.35 0.44 2.16 16 22 N -0.80 -38.43 10.70 21.87 0.23 -38.19 16 23 Si 0.99 34.81 29.59 68.60 2.03 36.84 16 24 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 25 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 26 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 27 C -0.25 -12.84 9.73 22.47 0.22 -12.62 16 28 C -0.04 -2.03 9.54 22.25 0.21 -1.81 16 29 C 0.11 3.00 5.33 86.37 0.46 3.47 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.42 2.24 8.47 -92.71 -0.79 1.46 16 34 H 0.04 1.11 6.70 -2.39 -0.02 1.09 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 2.84 4.52 -2.39 -0.01 2.83 16 43 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 44 H 0.12 4.74 6.13 -2.91 -0.02 4.73 16 45 H 0.12 6.15 5.89 -2.91 -0.02 6.13 16 46 H 0.30 12.61 8.29 -92.71 -0.77 11.84 16 47 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 48 H 0.09 4.60 8.00 -2.91 -0.02 4.57 16 49 H 0.06 2.03 5.71 -2.39 -0.01 2.02 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.39 398.81 2.39 -75.00 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.17 Total: 33.01 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 5.10 Total: -18.31 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -4.78 Total: -74.17 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.12 Total: -52.37 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -77.39 2.39 -75.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345905594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.250 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds