Wall clock time and date at job start Wed Apr 1 2020 03:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21288 * 119.99658 * 2 1 4 4 N 1.34774 * 120.00753 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00374 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47123 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46987 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.52922 * 54.91980 * 7 6 5 9 9 C 1.53044 * 109.49852 * 174.99759 * 7 6 5 10 10 C 1.53043 * 109.54143 * 181.31851 * 9 7 6 11 11 C 1.53194 * 109.30760 * 298.63244 * 10 9 7 12 12 N 1.46928 * 108.77418 * 54.63552 * 11 10 9 13 13 C 1.34774 * 120.62745 * 126.37111 * 12 11 10 14 14 O 1.21588 * 119.99985 * 186.25175 * 13 12 11 15 15 C 1.47640 * 120.00383 * 6.24239 * 13 12 11 16 16 C 1.40018 * 119.90004 * 215.89521 * 15 13 12 17 17 C 1.36318 * 120.10766 * 180.02562 * 16 15 13 18 18 C 1.40886 * 119.89390 * 0.02562 * 17 16 15 19 19 C 1.41108 * 120.10539 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99530 * 211.44234 * 19 18 17 21 21 C 1.40219 * 119.99853 * 31.44037 * 19 18 17 22 22 N 1.30647 * 120.00202 * 25.13966 * 21 19 18 23 23 Si 1.86801 * 119.99862 * 205.14361 * 21 19 18 24 24 H 1.48499 * 109.47231 * 89.99889 * 23 21 19 25 25 H 1.48500 * 109.47139 * 329.99811 * 23 21 19 26 26 H 1.48506 * 109.47063 * 209.99689 * 23 21 19 27 27 C 1.40897 * 119.79195 * 0.25291 * 18 17 16 28 28 C 1.36315 * 119.88954 * 359.46441 * 27 18 17 29 29 C 1.46925 * 118.74006 * 306.63923 * 12 11 10 30 30 H 1.09004 * 109.47353 * 269.99883 * 1 2 3 31 31 H 1.09001 * 109.47334 * 30.00423 * 1 2 3 32 32 H 1.08999 * 109.46674 * 149.99992 * 1 2 3 33 33 H 0.97007 * 119.99362 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47393 * 59.99599 * 5 4 2 35 35 H 1.09004 * 109.46991 * 299.99743 * 5 4 2 36 36 H 1.08998 * 109.47433 * 59.99804 * 6 5 4 37 37 H 1.09003 * 109.47117 * 299.99380 * 6 5 4 38 38 H 1.09001 * 109.46125 * 61.29199 * 9 7 6 39 39 H 1.09009 * 109.44423 * 301.32790 * 9 7 6 40 40 H 1.08995 * 109.49613 * 178.68274 * 10 9 7 41 41 H 1.08999 * 109.49785 * 58.58450 * 10 9 7 42 42 H 1.08996 * 109.58835 * 294.84900 * 11 10 9 43 43 H 1.08997 * 109.58185 * 174.42012 * 11 10 9 44 44 H 1.07995 * 119.94223 * 0.02613 * 16 15 13 45 45 H 1.07998 * 120.05198 * 180.02562 * 17 16 15 46 46 H 0.96998 * 119.99807 * 6.11457 * 22 21 19 47 47 H 1.07998 * 120.05228 * 179.75269 * 27 18 17 48 48 H 1.07998 * 119.95041 * 180.29874 * 28 27 18 49 49 H 1.08994 * 109.58565 * 173.14594 * 29 12 11 50 50 H 1.08995 * 109.58328 * 293.57215 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 6 4.1560 -2.6094 0.0010 7 6 5.6860 -2.6093 0.0009 8 1 6.0504 -2.0189 0.8417 9 6 6.1970 -4.0464 0.1266 10 6 7.7271 -4.0447 0.1597 11 6 8.2614 -3.4543 -1.1490 12 7 7.6605 -2.1286 -1.3498 13 6 8.4370 -1.0485 -1.5665 14 8 7.9375 0.0588 -1.6178 15 6 9.8941 -1.2099 -1.7412 16 6 10.7692 -0.2398 -1.2374 17 6 12.1152 -0.3842 -1.3968 18 6 12.6256 -1.5116 -2.0702 19 6 14.0182 -1.6653 -2.2382 20 1 14.4042 -2.1701 -3.1114 21 6 14.9007 -1.1626 -1.2714 22 7 14.4988 -1.0068 -0.0381 23 14 16.6510 -0.7156 -1.7469 24 1 16.7005 0.7062 -2.1725 25 1 17.0967 -1.5833 -2.8666 26 1 17.5472 -0.9144 -0.5796 27 6 11.7409 -2.4821 -2.5805 28 6 10.3966 -2.3319 -2.4112 29 6 6.1975 -2.0018 -1.3040 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6960 -2.0072 0.0005 34 1 4.0090 -0.6529 0.8910 35 1 4.0096 -0.6534 -0.8889 36 1 3.7931 -3.1231 -0.8892 37 1 3.7925 -3.1235 0.8908 38 1 5.8529 -4.6302 -0.7272 39 1 5.8144 -4.4884 1.0467 40 1 8.0897 -5.0663 0.2727 41 1 8.0721 -3.4407 0.9989 42 1 7.9936 -4.1065 -1.9803 43 1 9.3456 -3.3591 -1.0911 44 1 10.3769 0.6242 -0.7217 45 1 12.7894 0.3643 -1.0075 46 1 13.6207 -1.3205 0.2292 47 1 12.1273 -3.3459 -3.1009 48 1 9.7178 -3.0777 -2.7978 49 1 5.9205 -0.9485 -1.3483 50 1 5.7581 -2.5331 -2.1481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345905595.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:41 Heat of formation + Delta-G solvation = -77.647377 kcal Electronic energy + Delta-G solvation = -29627.461492 eV Core-core repulsion = 25617.985059 eV Total energy + Delta-G solvation = -4009.476433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.15582 -39.69111 -38.00448 -37.02825 -35.59758 -34.15370 -33.40226 -31.95438 -30.57474 -30.02079 -29.67461 -27.86092 -26.22111 -24.77451 -24.00980 -21.95688 -21.58020 -21.10468 -20.96083 -20.11860 -18.85074 -18.11397 -17.06452 -16.68774 -16.27490 -16.17925 -15.64303 -15.24761 -14.74542 -14.55675 -14.26026 -14.21446 -14.04999 -13.80759 -13.76460 -13.40523 -13.26513 -12.99453 -12.70776 -12.61529 -12.59641 -12.40622 -12.29658 -12.03050 -11.93223 -11.55911 -11.41766 -11.20447 -11.08295 -11.03180 -10.88419 -10.56464 -10.48167 -10.45690 -10.10238 -9.86670 -9.70341 -9.33645 -9.20470 -8.98872 -8.30008 -7.90966 -7.68594 -7.37811 -4.66898 2.20783 2.39379 2.78404 2.93422 3.07232 3.09394 3.26054 3.40838 3.68831 3.88580 4.39715 4.44319 4.50025 4.58345 4.70885 4.83556 4.94348 4.97326 5.01914 5.14446 5.16747 5.30068 5.33601 5.40851 5.45909 5.51901 5.59855 5.64126 5.68150 5.78617 5.80975 5.87458 5.98063 6.03773 6.07355 6.11391 6.14003 6.18018 6.31192 6.61450 6.76765 6.88256 6.93669 7.20432 7.22933 7.43007 7.54818 7.58859 7.65806 7.96629 7.97117 8.01016 8.10358 8.53027 8.65895 8.90460 9.84753 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.002034 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.886706 B =13762.642736 C =14473.330982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.543 6.543 4 N -0.732 5.732 5 C 0.112 3.888 6 C -0.120 4.120 7 C -0.099 4.099 8 H 0.078 0.922 9 C -0.110 4.110 10 C -0.136 4.136 11 C 0.098 3.902 12 N -0.618 5.618 13 C 0.577 3.423 14 O -0.564 6.564 15 C -0.283 4.283 16 C -0.024 4.024 17 C -0.223 4.223 18 C 0.110 3.890 19 C -0.507 4.507 20 H 0.082 0.918 21 C 0.038 3.962 22 N -0.780 5.780 23 Si 1.069 2.931 24 H -0.272 1.272 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.231 4.231 28 C -0.050 4.050 29 C 0.116 3.884 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.301 0.699 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 -9.373 1.998 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.291 3.709 3 O -0.420 6.420 4 N -0.385 5.385 5 C -0.012 4.012 6 C -0.159 4.159 7 C -0.119 4.119 8 H 0.096 0.904 9 C -0.148 4.148 10 C -0.175 4.175 11 C -0.025 4.025 12 N -0.352 5.352 13 C 0.371 3.629 14 O -0.444 6.444 15 C -0.287 4.287 16 C -0.043 4.043 17 C -0.242 4.242 18 C 0.107 3.893 19 C -0.534 4.534 20 H 0.100 0.900 21 C -0.186 4.186 22 N -0.401 5.401 23 Si 0.892 3.108 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.251 4.251 28 C -0.069 4.069 29 C -0.007 4.007 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.309 -7.357 2.608 19.903 hybrid contribution -1.782 -1.257 -0.547 2.248 sum -20.090 -8.614 2.061 21.956 Atomic orbital electron populations 1.21880 0.91731 1.04849 1.04689 1.20851 0.90634 0.83581 0.75793 1.90776 1.70806 1.31396 1.49008 1.46122 1.07695 1.08671 1.75998 1.21503 0.79101 0.97408 1.03157 1.21775 0.95677 0.95619 1.02803 1.21392 0.93582 0.97523 0.99425 0.90354 1.21547 0.95918 0.95561 1.01783 1.21950 0.95374 1.01334 0.98816 1.22148 1.00905 0.83296 0.96148 1.47934 1.05557 1.08435 1.73238 1.18709 0.87183 0.82833 0.74140 1.90664 1.75677 1.25133 1.52970 1.18808 0.90275 1.01885 1.17771 1.20357 0.93039 0.95472 0.95444 1.20820 0.93930 0.99452 1.10011 1.17820 0.93457 0.89435 0.88614 1.20786 0.91510 1.33117 1.07990 0.90000 1.27175 1.07097 0.91824 0.92531 1.70355 1.22965 1.29289 1.17512 0.83570 0.72587 0.78025 0.76611 1.19751 1.19954 1.19992 1.20715 0.92680 1.00491 1.11196 1.20569 0.95210 0.94705 0.96390 1.21472 0.80874 1.02533 0.95868 0.88928 0.88886 0.90262 0.76671 0.91297 0.90861 0.91056 0.90989 0.91861 0.91903 0.90819 0.91394 0.92261 0.87204 0.88424 0.87634 0.88549 0.88337 0.88261 0.89059 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.30 36.01 0.37 -0.56 16 2 C 0.50 5.12 7.94 -10.99 -0.09 5.04 16 3 O -0.54 -8.58 17.10 5.55 0.09 -8.49 16 4 N -0.73 -5.79 5.56 -60.30 -0.33 -6.13 16 5 C 0.11 1.11 5.43 -4.05 -0.02 1.08 16 6 C -0.12 -0.91 4.80 -26.73 -0.13 -1.04 16 7 C -0.10 -1.03 2.32 -90.72 -0.21 -1.24 16 8 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.11 -1.01 5.17 -26.69 -0.14 -1.15 16 10 C -0.14 -1.53 6.08 -26.61 -0.16 -1.69 16 11 C 0.10 1.35 4.77 -3.71 -0.02 1.34 16 12 N -0.62 -10.19 2.98 -174.23 -0.52 -10.71 16 13 C 0.58 12.24 7.36 -12.42 -0.09 12.15 16 14 O -0.56 -13.70 16.25 5.29 0.09 -13.61 16 15 C -0.28 -6.33 5.28 -104.73 -0.55 -6.89 16 16 C -0.02 -0.57 9.54 -39.61 -0.38 -0.95 16 17 C -0.22 -5.57 8.00 -39.27 -0.31 -5.88 16 18 C 0.11 2.76 5.15 -106.80 -0.55 2.21 16 19 C -0.51 -12.65 8.95 -37.75 -0.34 -12.99 16 20 H 0.08 1.98 7.96 -52.49 -0.42 1.56 16 21 C 0.04 0.90 4.90 -17.31 -0.08 0.82 16 22 N -0.78 -19.70 12.52 55.56 0.70 -19.00 16 23 Si 1.07 20.46 30.00 -169.99 -5.10 15.36 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.23 -5.25 9.73 -39.27 -0.38 -5.64 16 28 C -0.05 -1.04 7.28 -39.61 -0.29 -1.33 16 29 C 0.12 1.57 5.31 -3.93 -0.02 1.55 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.40 1.73 8.47 -40.82 -0.35 1.38 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.89 6.70 -51.93 -0.35 0.54 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 43 H 0.11 1.76 4.53 -51.93 -0.24 1.53 16 44 H 0.10 2.29 8.00 -52.49 -0.42 1.87 16 45 H 0.11 2.71 6.93 -52.49 -0.36 2.35 16 46 H 0.30 7.80 6.96 -40.82 -0.28 7.52 16 47 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 48 H 0.10 1.77 6.10 -52.49 -0.32 1.45 16 49 H 0.09 1.45 5.71 -51.93 -0.30 1.15 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -32.29 399.22 -10.20 -42.49 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -7.74 Total: 9.23 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.40 Total: -15.17 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.16 Total: -35.83 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.18 Total: -22.10 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.10 Total: 15.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.29 -10.20 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345905595.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.160 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds