Wall clock time and date at job start Wed Apr 1 2020 03:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21288 * 119.99658 * 2 1 4 4 N 1.34774 * 120.00753 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00374 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47123 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46987 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.52922 * 54.91980 * 7 6 5 9 9 C 1.53044 * 109.49852 * 174.99759 * 7 6 5 10 10 C 1.53043 * 109.54143 * 181.31851 * 9 7 6 11 11 C 1.53194 * 109.30760 * 298.63244 * 10 9 7 12 12 N 1.46928 * 108.77418 * 54.63552 * 11 10 9 13 13 C 1.34774 * 120.62745 * 126.37111 * 12 11 10 14 14 O 1.21588 * 119.99985 * 186.25175 * 13 12 11 15 15 C 1.47640 * 120.00383 * 6.24239 * 13 12 11 16 16 C 1.40018 * 119.90004 * 215.89521 * 15 13 12 17 17 C 1.36318 * 120.10766 * 180.02562 * 16 15 13 18 18 C 1.40886 * 119.89390 * 0.02562 * 17 16 15 19 19 C 1.41108 * 120.10539 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99530 * 211.44234 * 19 18 17 21 21 C 1.40219 * 119.99853 * 31.44037 * 19 18 17 22 22 N 1.30647 * 120.00202 * 25.13966 * 21 19 18 23 23 Si 1.86801 * 119.99862 * 205.14361 * 21 19 18 24 24 H 1.48499 * 109.47231 * 89.99889 * 23 21 19 25 25 H 1.48500 * 109.47139 * 329.99811 * 23 21 19 26 26 H 1.48506 * 109.47063 * 209.99689 * 23 21 19 27 27 C 1.40897 * 119.79195 * 0.25291 * 18 17 16 28 28 C 1.36315 * 119.88954 * 359.46441 * 27 18 17 29 29 C 1.46925 * 118.74006 * 306.63923 * 12 11 10 30 30 H 1.09004 * 109.47353 * 269.99883 * 1 2 3 31 31 H 1.09001 * 109.47334 * 30.00423 * 1 2 3 32 32 H 1.08999 * 109.46674 * 149.99992 * 1 2 3 33 33 H 0.97007 * 119.99362 * 0.02562 * 4 2 1 34 34 H 1.09000 * 109.47393 * 59.99599 * 5 4 2 35 35 H 1.09004 * 109.46991 * 299.99743 * 5 4 2 36 36 H 1.08998 * 109.47433 * 59.99804 * 6 5 4 37 37 H 1.09003 * 109.47117 * 299.99380 * 6 5 4 38 38 H 1.09001 * 109.46125 * 61.29199 * 9 7 6 39 39 H 1.09009 * 109.44423 * 301.32790 * 9 7 6 40 40 H 1.08995 * 109.49613 * 178.68274 * 10 9 7 41 41 H 1.08999 * 109.49785 * 58.58450 * 10 9 7 42 42 H 1.08996 * 109.58835 * 294.84900 * 11 10 9 43 43 H 1.08997 * 109.58185 * 174.42012 * 11 10 9 44 44 H 1.07995 * 119.94223 * 0.02613 * 16 15 13 45 45 H 1.07998 * 120.05198 * 180.02562 * 17 16 15 46 46 H 0.96998 * 119.99807 * 6.11457 * 22 21 19 47 47 H 1.07998 * 120.05228 * 179.75269 * 27 18 17 48 48 H 1.07998 * 119.95041 * 180.29874 * 28 27 18 49 49 H 1.08994 * 109.58565 * 173.14594 * 29 12 11 50 50 H 1.08995 * 109.58328 * 293.57215 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1670 0.0011 6 6 4.1560 -2.6094 0.0010 7 6 5.6860 -2.6093 0.0009 8 1 6.0504 -2.0189 0.8417 9 6 6.1970 -4.0464 0.1266 10 6 7.7271 -4.0447 0.1597 11 6 8.2614 -3.4543 -1.1490 12 7 7.6605 -2.1286 -1.3498 13 6 8.4370 -1.0485 -1.5665 14 8 7.9375 0.0588 -1.6178 15 6 9.8941 -1.2099 -1.7412 16 6 10.7692 -0.2398 -1.2374 17 6 12.1152 -0.3842 -1.3968 18 6 12.6256 -1.5116 -2.0702 19 6 14.0182 -1.6653 -2.2382 20 1 14.4042 -2.1701 -3.1114 21 6 14.9007 -1.1626 -1.2714 22 7 14.4988 -1.0068 -0.0381 23 14 16.6510 -0.7156 -1.7469 24 1 16.7005 0.7062 -2.1725 25 1 17.0967 -1.5833 -2.8666 26 1 17.5472 -0.9144 -0.5796 27 6 11.7409 -2.4821 -2.5805 28 6 10.3966 -2.3319 -2.4112 29 6 6.1975 -2.0018 -1.3040 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6960 -2.0072 0.0005 34 1 4.0090 -0.6529 0.8910 35 1 4.0096 -0.6534 -0.8889 36 1 3.7931 -3.1231 -0.8892 37 1 3.7925 -3.1235 0.8908 38 1 5.8529 -4.6302 -0.7272 39 1 5.8144 -4.4884 1.0467 40 1 8.0897 -5.0663 0.2727 41 1 8.0721 -3.4407 0.9989 42 1 7.9936 -4.1065 -1.9803 43 1 9.3456 -3.3591 -1.0911 44 1 10.3769 0.6242 -0.7217 45 1 12.7894 0.3643 -1.0075 46 1 13.6207 -1.3205 0.2292 47 1 12.1273 -3.3459 -3.1009 48 1 9.7178 -3.0777 -2.7978 49 1 5.9205 -0.9485 -1.3483 50 1 5.7581 -2.5331 -2.1481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345905595.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:40 Heat of formation + Delta-G solvation = -97.985312 kcal Electronic energy + Delta-G solvation = -29628.343411 eV Core-core repulsion = 25617.985059 eV Total energy + Delta-G solvation = -4010.358352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50015 -40.63354 -39.51985 -38.58336 -36.62348 -35.89298 -34.54527 -32.96867 -31.92178 -31.69815 -30.93452 -28.76908 -27.79592 -26.21146 -24.95108 -23.52330 -23.03247 -22.42897 -21.90590 -21.11445 -20.25879 -19.94370 -18.20091 -17.76885 -17.42045 -17.10879 -16.87638 -16.51971 -16.31802 -15.87370 -15.74574 -15.44267 -15.33964 -14.89472 -14.81063 -14.53753 -14.41521 -14.34486 -14.17011 -13.97231 -13.87447 -13.47711 -13.27095 -13.17955 -13.05335 -12.84164 -12.78033 -12.68802 -12.32068 -12.02019 -11.96861 -11.78039 -11.68406 -11.60915 -11.51819 -11.37920 -10.99627 -10.97746 -10.70831 -10.16224 -9.81109 -9.68528 -9.48197 -9.26678 -6.59799 0.38462 0.90506 1.50926 1.53297 1.61112 1.78685 1.91538 2.11677 2.26706 2.29144 2.65288 3.41482 3.57621 3.75457 3.81265 3.90065 3.97665 4.07458 4.15218 4.20103 4.21353 4.25936 4.31393 4.40912 4.50341 4.59728 4.62037 4.65949 4.72797 4.77108 4.84467 4.87579 4.93052 4.95786 5.01546 5.03922 5.10373 5.11236 5.19245 5.27178 5.33387 5.41674 5.46798 5.54131 5.61018 5.65889 5.73605 5.81735 6.10382 6.20809 6.44242 6.57077 6.63226 6.79332 7.26397 7.27415 7.92457 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.002034 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.886706 B =13762.642736 C =14473.330982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.494 3.506 3 O -0.612 6.612 4 N -0.714 5.714 5 C 0.112 3.888 6 C -0.103 4.103 7 C -0.094 4.094 8 H 0.051 0.949 9 C -0.102 4.102 10 C -0.134 4.134 11 C 0.090 3.910 12 N -0.608 5.608 13 C 0.569 3.431 14 O -0.607 6.607 15 C -0.284 4.284 16 C -0.039 4.039 17 C -0.237 4.237 18 C 0.087 3.913 19 C -0.535 4.535 20 H 0.087 0.913 21 C 0.004 3.996 22 N -0.802 5.802 23 Si 1.119 2.881 24 H -0.268 1.268 25 H -0.253 1.253 26 H -0.270 1.270 27 C -0.237 4.237 28 C -0.033 4.033 29 C 0.110 3.890 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.422 0.578 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.285 0.715 47 H 0.117 0.883 48 H 0.139 0.861 49 H 0.058 0.942 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.252 -13.385 1.290 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.283 3.717 3 O -0.494 6.494 4 N -0.367 5.367 5 C -0.012 4.012 6 C -0.141 4.141 7 C -0.114 4.114 8 H 0.070 0.930 9 C -0.140 4.140 10 C -0.172 4.172 11 C -0.032 4.032 12 N -0.339 5.339 13 C 0.363 3.637 14 O -0.491 6.491 15 C -0.288 4.288 16 C -0.058 4.058 17 C -0.256 4.256 18 C 0.084 3.916 19 C -0.562 4.562 20 H 0.105 0.895 21 C -0.214 4.214 22 N -0.424 5.424 23 Si 0.936 3.064 24 H -0.193 1.193 25 H -0.177 1.177 26 H -0.195 1.195 27 C -0.257 4.257 28 C -0.051 4.051 29 C -0.012 4.012 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.136 0.864 48 H 0.156 0.844 49 H 0.077 0.923 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.738 -11.483 1.906 23.782 hybrid contribution -1.235 -0.055 -0.318 1.276 sum -21.973 -11.538 1.588 24.869 Atomic orbital electron populations 1.21891 0.87568 1.06319 1.06274 1.21832 0.92686 0.82925 0.74218 1.90749 1.72507 1.33891 1.52284 1.45977 1.06866 1.09352 1.74524 1.21349 0.80447 0.98927 1.00505 1.21678 0.93157 0.93841 1.05411 1.21341 0.95622 0.98157 0.96284 0.93033 1.21538 0.93934 0.94330 1.04150 1.21946 0.97212 1.01976 0.96085 1.22379 0.99539 0.82166 0.99115 1.47982 1.06728 1.08275 1.70935 1.18609 0.87076 0.83506 0.74538 1.90644 1.76235 1.27037 1.55178 1.19092 0.91149 1.01722 1.16851 1.20435 0.93181 0.96074 0.96140 1.20703 0.93974 0.99724 1.11232 1.18140 0.94412 0.89909 0.89128 1.20991 0.91856 1.34661 1.08645 0.89543 1.28561 1.10492 0.90588 0.91783 1.70470 1.22295 1.31060 1.18528 0.82977 0.68146 0.78259 0.77058 1.19325 1.17708 1.19513 1.20965 0.93177 1.00504 1.11022 1.20840 0.95146 0.94483 0.94665 1.21728 0.78919 1.01536 0.99000 0.87101 0.89458 0.86736 0.74013 0.94003 0.93896 0.88409 0.88165 0.89379 0.89476 0.88206 0.93743 0.88979 0.89662 0.89265 0.89531 0.90278 0.86450 0.84392 0.92315 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.30 71.24 0.73 -0.63 16 2 C 0.49 9.79 7.94 87.66 0.70 10.49 16 3 O -0.61 -20.46 17.10 -3.06 -0.05 -20.51 16 4 N -0.71 -10.07 5.56 -463.07 -2.57 -12.64 16 5 C 0.11 2.19 5.43 86.38 0.47 2.66 16 6 C -0.10 -1.20 4.80 30.59 0.15 -1.05 16 7 C -0.09 -1.74 2.32 -10.86 -0.03 -1.77 16 8 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 9 C -0.10 -1.39 5.17 30.62 0.16 -1.23 16 10 C -0.13 -2.58 6.08 30.67 0.19 -2.39 16 11 C 0.09 2.24 4.77 86.36 0.41 2.65 16 12 N -0.61 -19.51 2.98 -823.39 -2.45 -21.96 16 13 C 0.57 24.76 7.36 86.73 0.64 25.40 16 14 O -0.61 -31.02 16.25 -3.99 -0.06 -31.09 16 15 C -0.28 -13.00 5.28 -19.93 -0.11 -13.11 16 16 C -0.04 -1.98 9.54 22.25 0.21 -1.76 16 17 C -0.24 -12.55 8.00 22.47 0.18 -12.37 16 18 C 0.09 4.51 5.15 -21.28 -0.11 4.40 16 19 C -0.53 -27.27 8.95 23.46 0.21 -27.06 16 20 H 0.09 4.21 7.96 -2.91 -0.02 4.18 16 21 C 0.00 0.20 4.90 85.35 0.42 0.62 16 22 N -0.80 -42.19 12.52 21.87 0.27 -41.92 16 23 Si 1.12 41.32 30.00 68.60 2.06 43.38 16 24 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 26 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 27 C -0.24 -10.71 9.73 22.47 0.22 -10.49 16 28 C -0.03 -1.34 7.28 22.25 0.16 -1.18 16 29 C 0.11 2.86 5.31 86.22 0.46 3.32 16 30 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.42 2.06 8.47 -92.70 -0.79 1.27 16 34 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 1.11 6.70 -2.38 -0.02 1.09 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.77 8.04 -2.39 -0.02 1.75 16 43 H 0.09 2.59 4.53 -2.39 -0.01 2.58 16 44 H 0.09 4.55 8.00 -2.91 -0.02 4.53 16 45 H 0.09 4.80 6.93 -2.91 -0.02 4.78 16 46 H 0.29 15.66 6.96 -92.71 -0.65 15.02 16 47 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 48 H 0.14 4.51 6.10 -2.91 -0.02 4.49 16 49 H 0.06 1.94 5.71 -2.39 -0.01 1.93 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -78.91 399.22 2.54 -76.37 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.29 Total: 31.88 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 5.06 Total: -23.52 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -4.75 Total: -76.52 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.12 Total: -51.59 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.06 Total: 43.38 kcal Total: -78.91 2.54 -76.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345905595.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.612 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds