Wall clock time and date at job start Wed Apr 1 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99873 * 2 1 4 4 N 1.34774 * 120.00339 * 180.02562 * 2 1 3 5 5 C 1.47290 * 125.79121 * 359.97438 * 4 2 1 6 6 C 1.54325 * 107.30599 * 178.92556 * 5 4 2 7 7 C 1.55154 * 102.94303 * 337.81911 * 6 5 4 8 8 H 1.09008 * 111.03635 * 277.41090 * 7 6 5 9 9 C 1.50701 * 111.00686 * 153.57472 * 7 6 5 10 10 O 1.21282 * 119.99606 * 6.35507 * 9 7 6 11 11 N 1.34772 * 119.99967 * 186.34802 * 9 7 6 12 12 C 1.46502 * 119.99631 * 179.97438 * 11 9 7 13 13 H 1.08997 * 109.47677 * 325.00157 * 12 11 9 14 14 C 1.52998 * 109.47153 * 204.99945 * 12 11 9 15 15 C 1.53004 * 109.46828 * 65.00119 * 14 12 11 16 16 C 1.50706 * 109.46713 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00435 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99443 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99824 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46730 * 90.00137 * 20 18 16 22 22 H 1.48501 * 109.47061 * 210.00159 * 20 18 16 23 23 H 1.48492 * 109.47175 * 330.00140 * 20 18 16 24 24 C 1.50707 * 109.47104 * 85.00436 * 12 11 9 25 25 C 1.38229 * 120.00069 * 39.72239 * 24 12 11 26 26 C 1.38232 * 120.00057 * 179.77118 * 25 24 12 27 27 C 1.38238 * 120.00181 * 0.50494 * 26 25 24 28 28 C 1.38233 * 119.99192 * 359.74747 * 27 26 25 29 29 C 1.38234 * 120.00765 * 0.02562 * 28 27 26 30 30 C 1.47425 * 125.65138 * 179.97438 * 4 2 1 31 31 H 1.09007 * 109.46778 * 239.99642 * 1 2 3 32 32 H 1.08997 * 109.47218 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.47139 * 119.99939 * 1 2 3 34 34 H 1.09004 * 109.85762 * 59.50172 * 5 4 2 35 35 H 1.08995 * 110.00297 * 298.43119 * 5 4 2 36 36 H 1.09002 * 110.72180 * 219.45147 * 6 5 4 37 37 H 1.08997 * 110.72163 * 96.18354 * 6 5 4 38 38 H 0.96993 * 120.00204 * 0.02562 * 11 9 7 39 39 H 1.09001 * 109.47328 * 184.99993 * 14 12 11 40 40 H 1.08997 * 109.47192 * 305.00417 * 14 12 11 41 41 H 1.09001 * 109.47064 * 300.00036 * 15 14 12 42 42 H 1.08997 * 109.46991 * 60.00175 * 15 14 12 43 43 H 0.97011 * 119.99847 * 180.02562 * 19 18 16 44 44 H 1.08005 * 120.00075 * 0.02562 * 25 24 12 45 45 H 1.07999 * 120.00283 * 180.23491 * 26 25 24 46 46 H 1.07994 * 120.00532 * 179.73102 * 27 26 25 47 47 H 1.08011 * 119.99665 * 179.97438 * 28 27 26 48 48 H 1.07999 * 120.00180 * 179.97438 * 29 28 27 49 49 H 1.09002 * 110.36696 * 85.25946 * 30 4 2 50 50 H 1.08995 * 110.36608 * 323.04783 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5770 -2.5105 -0.0006 6 6 2.7324 -3.5332 -0.0289 7 6 3.9106 -2.7105 -0.6140 8 1 3.8610 -2.6756 -1.7024 9 6 5.2355 -3.2618 -0.1539 10 8 5.2749 -4.2934 0.4826 11 7 6.3765 -2.6085 -0.4499 12 6 7.6645 -3.1443 -0.0021 13 1 7.5421 -3.6185 0.9716 14 6 8.6797 -2.0051 0.1094 15 6 8.2401 -1.0361 1.2089 16 6 9.2404 0.0857 1.3192 17 1 10.1035 0.1054 0.6704 18 6 9.0535 1.0869 2.2485 19 7 8.0027 1.0628 3.0389 20 14 10.2938 2.4771 2.3857 21 1 9.8977 3.5850 1.4796 22 1 10.3303 2.9715 3.7856 23 1 11.6391 1.9800 2.0011 24 6 8.1588 -4.1618 -0.9978 25 6 7.9973 -3.9385 -2.3524 26 6 8.4549 -4.8697 -3.2658 27 6 9.0648 -6.0290 -2.8244 28 6 9.2217 -6.2547 -1.4697 29 6 8.7682 -5.3214 -0.5563 30 6 3.6480 -1.3122 -0.0011 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3633 1.0276 0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 0.9503 -2.6347 -0.8838 35 1 0.9798 -2.6509 0.9003 36 1 2.4881 -4.3732 -0.6792 37 1 2.9661 -3.8791 0.9780 38 1 6.3450 -1.7834 -0.9587 39 1 9.6594 -2.4142 0.3562 40 1 8.7364 -1.4745 -0.8410 41 1 7.2604 -0.6269 0.9621 42 1 8.1834 -1.5666 2.1593 43 1 7.8711 1.7675 3.6925 44 1 7.5171 -3.0346 -2.6972 45 1 8.3321 -4.6934 -4.3242 46 1 9.4185 -6.7585 -3.5379 47 1 9.6978 -7.1607 -1.1247 48 1 8.8905 -5.4980 0.5021 49 1 4.0343 -1.2657 1.0171 50 1 4.1056 -0.5368 -0.6154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352180762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:50 Heat of formation + Delta-G solvation = -61.058721 kcal Electronic energy + Delta-G solvation = -30273.348536 eV Core-core repulsion = 26264.591441 eV Total energy + Delta-G solvation = -4008.757095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52886 -39.65267 -38.72321 -37.09788 -35.70007 -33.20206 -32.42682 -31.44928 -30.72417 -30.35560 -29.93740 -28.88411 -26.49327 -24.15394 -23.61353 -22.63718 -22.24094 -21.08189 -20.05394 -19.86125 -19.40597 -17.47765 -17.15169 -16.90618 -16.27501 -16.06306 -15.60825 -15.51078 -15.15962 -14.69388 -14.46843 -14.38321 -14.10236 -13.58256 -13.54756 -13.29879 -13.18977 -13.02500 -12.83149 -12.75348 -12.60200 -12.58200 -12.19071 -12.11900 -11.77519 -11.75947 -11.39408 -11.15790 -11.03048 -10.95807 -10.95262 -10.66195 -10.53869 -10.05744 -9.94926 -9.61090 -9.55016 -9.16293 -8.82009 -8.78561 -8.74907 -8.46578 -8.35194 -6.00306 -4.03612 1.49659 1.54581 2.56207 2.67698 2.92717 3.32444 3.39168 3.39823 3.41668 3.96229 4.15520 4.36255 4.45805 4.67782 4.73301 4.96185 4.98836 5.01619 5.05277 5.07822 5.10007 5.15935 5.18888 5.25709 5.33931 5.35879 5.58508 5.60967 5.63084 5.64066 5.74796 5.77803 5.85141 5.86603 5.97538 6.09520 6.12555 6.16249 6.32559 6.53133 6.59883 6.62518 6.71730 6.93348 6.95505 7.14477 7.38908 7.63988 7.73143 7.75678 7.97745 8.08240 8.38675 8.42061 9.03037 9.61165 11.10434 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.005573 B = 0.004549 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5023.307801 B = 6153.376572 C =10421.414847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.523 3.477 3 O -0.538 6.538 4 N -0.621 5.621 5 C 0.101 3.899 6 C -0.110 4.110 7 C -0.125 4.125 8 H 0.109 0.891 9 C 0.528 3.472 10 O -0.538 6.538 11 N -0.708 5.708 12 C 0.181 3.819 13 H 0.094 0.906 14 C -0.113 4.113 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.078 4.078 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.121 4.121 29 C -0.106 4.106 30 C 0.115 3.885 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.081 0.919 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.115 -12.681 -11.503 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.312 3.688 3 O -0.414 6.414 4 N -0.357 5.357 5 C -0.022 4.022 6 C -0.149 4.149 7 C -0.147 4.147 8 H 0.127 0.873 9 C 0.313 3.687 10 O -0.415 6.415 11 N -0.358 5.358 12 C 0.077 3.923 13 H 0.112 0.888 14 C -0.151 4.151 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.079 4.079 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.139 4.139 29 C -0.125 4.125 30 C -0.008 4.008 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.099 0.901 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.900 -12.659 -10.878 20.499 hybrid contribution 0.666 1.141 -0.143 1.329 sum -11.234 -11.518 -11.020 19.502 Atomic orbital electron populations 1.21888 0.91404 1.05375 1.04043 1.20502 0.90354 0.82008 0.75935 1.90790 1.70720 1.30492 1.49442 1.48584 1.07232 1.05897 1.73997 1.22154 0.96521 0.81615 1.01929 1.22520 0.91908 0.96746 1.03686 1.22527 0.93594 0.96348 1.02205 0.87318 1.20030 0.85011 0.84254 0.79410 1.90686 1.87236 1.23866 1.39669 1.46025 1.05782 1.27261 1.56689 1.20144 0.82897 0.93587 0.95669 0.88781 1.21986 0.96704 0.94758 1.01634 1.19091 0.96778 0.92888 0.92435 1.21198 1.08529 1.07717 1.18843 0.92718 1.24998 0.95449 0.98090 0.95657 1.69960 1.27721 1.33667 1.21651 0.86633 0.81769 0.82558 0.77282 1.20652 1.21243 1.19902 1.20396 0.97500 0.95369 0.94664 1.20910 0.99913 0.99169 0.92633 1.21071 0.99302 0.94625 0.99203 1.21058 1.00444 0.97649 0.95687 1.21084 1.00324 0.99215 0.93308 1.21037 0.98203 0.93376 0.99855 1.22158 0.80923 0.95241 1.02445 0.89474 0.88960 0.89564 0.91143 0.90918 0.89428 0.88924 0.76279 0.91477 0.92531 0.96272 0.96611 0.92960 0.86469 0.86535 0.86619 0.86371 0.86003 0.90086 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.52 36.01 0.34 -0.99 16 2 C 0.52 6.88 7.96 -10.99 -0.09 6.79 16 3 O -0.54 -9.92 17.34 5.55 0.10 -9.82 16 4 N -0.62 -7.33 3.34 -170.31 -0.57 -7.90 16 5 C 0.10 0.82 6.51 -2.92 -0.02 0.80 16 6 C -0.11 -1.05 6.03 -24.90 -0.15 -1.20 16 7 C -0.12 -1.40 3.43 -89.63 -0.31 -1.71 16 8 H 0.11 1.00 8.14 -51.92 -0.42 0.58 16 9 C 0.53 7.79 7.11 -10.99 -0.08 7.71 16 10 O -0.54 -9.61 15.46 5.56 0.09 -9.52 16 11 N -0.71 -10.52 3.71 -54.93 -0.20 -10.72 16 12 C 0.18 3.01 2.17 -69.08 -0.15 2.86 16 13 H 0.09 1.75 7.44 -51.93 -0.39 1.37 16 14 C -0.11 -2.15 4.67 -26.73 -0.12 -2.28 16 15 C 0.03 0.62 4.86 -27.88 -0.14 0.48 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.08 -1.18 4.91 -104.62 -0.51 -1.69 16 25 C -0.11 -1.46 9.32 -39.59 -0.37 -1.83 16 26 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 27 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 28 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.11 -1.53 9.67 -39.58 -0.38 -1.91 16 30 C 0.12 1.54 6.32 -2.53 -0.02 1.52 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.05 7.50 -51.93 -0.39 0.66 16 38 H 0.40 5.44 8.60 -40.82 -0.35 5.09 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.49 7.75 -51.93 -0.40 0.08 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.12 1.44 7.71 -52.48 -0.40 1.03 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 48 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 49 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 50 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 LS Contribution 415.92 15.07 6.27 6.27 Total: -1.00 -35.62 415.92 -10.43 -46.05 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.23 Total: 5.33 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.60 Total: -10.34 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.04 Total: -44.63 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.18 Total: -19.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.62 -10.43 -46.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352180762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.013 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds