Wall clock time and date at job start Wed Apr 1 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99873 * 2 1 4 4 N 1.34774 * 120.00339 * 180.02562 * 2 1 3 5 5 C 1.47290 * 125.79121 * 359.97438 * 4 2 1 6 6 C 1.54325 * 107.30599 * 178.92556 * 5 4 2 7 7 C 1.55154 * 102.94303 * 337.81911 * 6 5 4 8 8 H 1.09008 * 111.03635 * 277.41090 * 7 6 5 9 9 C 1.50701 * 111.00686 * 153.57472 * 7 6 5 10 10 O 1.21282 * 119.99606 * 6.35507 * 9 7 6 11 11 N 1.34772 * 119.99967 * 186.34802 * 9 7 6 12 12 C 1.46502 * 119.99631 * 179.97438 * 11 9 7 13 13 H 1.08997 * 109.47677 * 325.00157 * 12 11 9 14 14 C 1.52998 * 109.47153 * 204.99945 * 12 11 9 15 15 C 1.53004 * 109.46828 * 65.00119 * 14 12 11 16 16 C 1.50706 * 109.46713 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00435 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99443 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99824 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46730 * 90.00137 * 20 18 16 22 22 H 1.48501 * 109.47061 * 210.00159 * 20 18 16 23 23 H 1.48492 * 109.47175 * 330.00140 * 20 18 16 24 24 C 1.50707 * 109.47104 * 85.00436 * 12 11 9 25 25 C 1.38229 * 120.00069 * 39.72239 * 24 12 11 26 26 C 1.38232 * 120.00057 * 179.77118 * 25 24 12 27 27 C 1.38238 * 120.00181 * 0.50494 * 26 25 24 28 28 C 1.38233 * 119.99192 * 359.74747 * 27 26 25 29 29 C 1.38234 * 120.00765 * 0.02562 * 28 27 26 30 30 C 1.47425 * 125.65138 * 179.97438 * 4 2 1 31 31 H 1.09007 * 109.46778 * 239.99642 * 1 2 3 32 32 H 1.08997 * 109.47218 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.47139 * 119.99939 * 1 2 3 34 34 H 1.09004 * 109.85762 * 59.50172 * 5 4 2 35 35 H 1.08995 * 110.00297 * 298.43119 * 5 4 2 36 36 H 1.09002 * 110.72180 * 219.45147 * 6 5 4 37 37 H 1.08997 * 110.72163 * 96.18354 * 6 5 4 38 38 H 0.96993 * 120.00204 * 0.02562 * 11 9 7 39 39 H 1.09001 * 109.47328 * 184.99993 * 14 12 11 40 40 H 1.08997 * 109.47192 * 305.00417 * 14 12 11 41 41 H 1.09001 * 109.47064 * 300.00036 * 15 14 12 42 42 H 1.08997 * 109.46991 * 60.00175 * 15 14 12 43 43 H 0.97011 * 119.99847 * 180.02562 * 19 18 16 44 44 H 1.08005 * 120.00075 * 0.02562 * 25 24 12 45 45 H 1.07999 * 120.00283 * 180.23491 * 26 25 24 46 46 H 1.07994 * 120.00532 * 179.73102 * 27 26 25 47 47 H 1.08011 * 119.99665 * 179.97438 * 28 27 26 48 48 H 1.07999 * 120.00180 * 179.97438 * 29 28 27 49 49 H 1.09002 * 110.36696 * 85.25946 * 30 4 2 50 50 H 1.08995 * 110.36608 * 323.04783 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5770 -2.5105 -0.0006 6 6 2.7324 -3.5332 -0.0289 7 6 3.9106 -2.7105 -0.6140 8 1 3.8610 -2.6756 -1.7024 9 6 5.2355 -3.2618 -0.1539 10 8 5.2749 -4.2934 0.4826 11 7 6.3765 -2.6085 -0.4499 12 6 7.6645 -3.1443 -0.0021 13 1 7.5421 -3.6185 0.9716 14 6 8.6797 -2.0051 0.1094 15 6 8.2401 -1.0361 1.2089 16 6 9.2404 0.0857 1.3192 17 1 10.1035 0.1054 0.6704 18 6 9.0535 1.0869 2.2485 19 7 8.0027 1.0628 3.0389 20 14 10.2938 2.4771 2.3857 21 1 9.8977 3.5850 1.4796 22 1 10.3303 2.9715 3.7856 23 1 11.6391 1.9800 2.0011 24 6 8.1588 -4.1618 -0.9978 25 6 7.9973 -3.9385 -2.3524 26 6 8.4549 -4.8697 -3.2658 27 6 9.0648 -6.0290 -2.8244 28 6 9.2217 -6.2547 -1.4697 29 6 8.7682 -5.3214 -0.5563 30 6 3.6480 -1.3122 -0.0011 31 1 -0.3633 -0.5139 0.8900 32 1 -0.3633 1.0276 0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 0.9503 -2.6347 -0.8838 35 1 0.9798 -2.6509 0.9003 36 1 2.4881 -4.3732 -0.6792 37 1 2.9661 -3.8791 0.9780 38 1 6.3450 -1.7834 -0.9587 39 1 9.6594 -2.4142 0.3562 40 1 8.7364 -1.4745 -0.8410 41 1 7.2604 -0.6269 0.9621 42 1 8.1834 -1.5666 2.1593 43 1 7.8711 1.7675 3.6925 44 1 7.5171 -3.0346 -2.6972 45 1 8.3321 -4.6934 -4.3242 46 1 9.4185 -6.7585 -3.5379 47 1 9.6978 -7.1607 -1.1247 48 1 8.8905 -5.4980 0.5021 49 1 4.0343 -1.2657 1.0171 50 1 4.1056 -0.5368 -0.6154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352180762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:49 Heat of formation + Delta-G solvation = -83.206917 kcal Electronic energy + Delta-G solvation = -30274.308954 eV Core-core repulsion = 26264.591441 eV Total energy + Delta-G solvation = -4009.717513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63932 -40.74697 -39.81478 -38.17426 -37.11933 -35.17204 -33.59426 -32.74262 -31.87238 -31.69529 -30.73957 -29.78272 -28.16201 -25.57487 -24.90192 -23.62419 -23.22618 -22.62370 -21.41426 -21.03527 -20.34179 -18.70491 -18.45074 -18.09352 -17.79027 -17.27400 -16.72428 -16.58413 -16.52940 -16.17427 -15.73327 -15.45609 -15.18738 -14.86144 -14.62487 -14.57624 -14.45222 -14.21150 -14.01989 -13.83585 -13.76105 -13.63410 -13.39840 -13.28669 -13.01238 -12.91155 -12.64440 -12.57211 -12.50513 -12.28911 -12.14120 -11.92132 -11.87005 -11.78459 -11.46208 -11.23524 -11.12609 -10.84970 -10.57821 -10.11966 -9.77713 -9.77036 -9.57053 -8.21462 -6.32776 0.46658 0.54681 1.37738 1.38634 1.49574 1.50508 1.58176 1.92900 2.25383 2.38697 2.93505 3.12560 3.25835 3.44747 3.77617 3.80784 3.86217 3.97110 4.11850 4.17538 4.19036 4.26205 4.27028 4.32052 4.34449 4.48511 4.54802 4.62741 4.64445 4.67173 4.73724 4.78235 4.81048 4.95774 4.96743 5.07932 5.08407 5.12521 5.16778 5.19192 5.24593 5.39593 5.48413 5.61096 5.64313 5.66119 5.81344 5.82282 6.15499 6.21258 6.47213 6.51953 6.84735 7.09329 7.20148 7.37058 8.89520 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.005573 B = 0.004549 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5023.307801 B = 6153.376572 C =10421.414847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.511 3.489 3 O -0.606 6.606 4 N -0.620 5.620 5 C 0.101 3.899 6 C -0.107 4.107 7 C -0.110 4.110 8 H 0.141 0.859 9 C 0.524 3.476 10 O -0.572 6.572 11 N -0.706 5.706 12 C 0.193 3.807 13 H 0.063 0.937 14 C -0.095 4.095 15 C 0.033 3.967 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.960 3.040 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.261 1.261 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.124 4.124 29 C -0.129 4.129 30 C 0.115 3.885 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.408 0.592 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.001 0.999 42 H -0.021 1.021 43 H 0.261 0.739 44 H 0.126 0.874 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.141 0.859 48 H 0.114 0.886 49 H 0.041 0.959 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 -14.065 -14.518 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.303 3.697 3 O -0.488 6.488 4 N -0.354 5.354 5 C -0.020 4.020 6 C -0.145 4.145 7 C -0.131 4.131 8 H 0.159 0.841 9 C 0.311 3.689 10 O -0.451 6.451 11 N -0.356 5.356 12 C 0.088 3.912 13 H 0.081 0.919 14 C -0.133 4.133 15 C -0.004 4.004 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.185 1.185 24 C -0.098 4.098 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.147 4.147 30 C -0.009 4.009 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.019 0.981 42 H -0.002 1.002 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.159 0.841 48 H 0.132 0.868 49 H 0.060 0.940 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.725 -14.083 -13.913 23.534 hybrid contribution 0.943 1.488 0.817 1.942 sum -11.782 -12.594 -13.097 21.655 Atomic orbital electron populations 1.21912 0.86722 1.06140 1.06678 1.21595 0.92504 0.81153 0.74405 1.90755 1.72414 1.32916 1.52693 1.48743 1.06367 1.07418 1.72894 1.22431 0.96085 0.78645 1.04795 1.22560 0.91454 0.97761 1.02770 1.22493 0.92029 0.94811 1.03804 0.84099 1.20652 0.85966 0.83723 0.78570 1.90665 1.87794 1.25520 1.41092 1.46021 1.05567 1.27482 1.56554 1.19736 0.83063 0.92992 0.95371 0.91915 1.21709 0.97195 0.94509 0.99896 1.18927 0.95625 0.93196 0.92650 1.21678 1.09080 1.08381 1.18743 0.91956 1.25940 0.97389 1.00994 0.95302 1.70114 1.29862 1.34726 1.22531 0.85518 0.79579 0.79122 0.77285 1.19851 1.21084 1.18478 1.20203 0.99219 0.95405 0.94980 1.21082 1.00192 1.00143 0.92039 1.21440 0.98199 0.94077 1.00396 1.21486 0.99120 0.98002 0.95797 1.21382 0.99819 0.99403 0.93610 1.21172 0.99245 0.94144 1.00188 1.21932 0.82626 0.96315 1.00055 0.87151 0.89298 0.86173 0.87105 0.89097 0.86708 0.91362 0.75567 0.91748 0.91228 0.98075 1.00237 0.93027 0.85592 0.83625 0.83406 0.84120 0.86828 0.94038 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.52 71.24 0.68 -1.39 16 2 C 0.51 13.37 7.96 87.66 0.70 14.07 16 3 O -0.61 -23.53 17.34 -3.04 -0.05 -23.59 16 4 N -0.62 -14.31 3.34 -811.12 -2.71 -17.01 16 5 C 0.10 1.36 6.51 86.68 0.56 1.92 16 6 C -0.11 -1.88 6.03 31.78 0.19 -1.69 16 7 C -0.11 -2.44 3.43 -10.15 -0.03 -2.47 16 8 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 9 C 0.52 16.16 7.11 87.66 0.62 16.78 16 10 O -0.57 -21.45 15.46 -3.04 -0.05 -21.50 16 11 N -0.71 -22.25 3.71 -446.09 -1.66 -23.90 16 12 C 0.19 6.84 2.17 44.25 0.10 6.94 16 13 H 0.06 2.59 7.44 -2.39 -0.02 2.57 16 14 C -0.10 -3.82 4.67 30.60 0.14 -3.67 16 15 C 0.03 1.73 4.86 29.85 0.15 1.88 16 16 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.00 0.09 5.46 84.65 0.46 0.56 16 19 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 20 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 C -0.10 -2.96 4.91 -19.87 -0.10 -3.06 16 25 C -0.12 -3.00 9.32 22.27 0.21 -2.79 16 26 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 27 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 28 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 29 C -0.13 -3.76 9.67 22.27 0.22 -3.54 16 30 C 0.11 3.25 6.32 86.85 0.55 3.80 16 31 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.56 7.50 -2.39 -0.02 1.54 16 38 H 0.41 11.69 8.60 -92.71 -0.80 10.89 16 39 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.00 0.05 7.75 -2.39 -0.02 0.03 16 42 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 43 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 44 H 0.13 2.92 7.71 -2.91 -0.02 2.89 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.14 2.54 8.06 -2.90 -0.02 2.52 16 48 H 0.11 3.35 8.04 -2.91 -0.02 3.32 16 49 H 0.04 1.48 8.03 -2.39 -0.02 1.46 16 50 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16 Total: -1.00 -84.05 415.92 3.32 -80.73 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.13 Total: 26.71 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.35 Total: -10.61 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -4.08 Total: -99.06 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.10 Total: -45.08 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -84.05 3.32 -80.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352180762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.476 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds