Wall clock time and date at job start Wed Apr 1 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21286 * 119.99708 * 2 1 4 4 N 1.34767 * 120.00221 * 179.97438 * 2 1 3 5 5 C 1.47430 * 125.65066 * 0.04211 * 4 2 1 6 6 C 1.54904 * 104.83492 * 204.09320 * 5 4 2 7 7 C 1.55153 * 101.58097 * 322.99185 * 6 5 4 8 8 H 1.09007 * 110.87220 * 277.06575 * 7 6 5 9 9 C 1.50703 * 110.72085 * 153.86626 * 7 6 5 10 10 O 1.21279 * 120.00137 * 5.02171 * 9 7 6 11 11 N 1.34776 * 120.00071 * 185.01565 * 9 7 6 12 12 C 1.46499 * 120.00218 * 179.97438 * 11 9 7 13 13 H 1.09006 * 109.46629 * 35.00951 * 12 11 9 14 14 C 1.52996 * 109.46968 * 155.00409 * 12 11 9 15 15 C 1.53002 * 109.47346 * 295.00183 * 14 12 11 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.50698 * 109.47571 * 275.00784 * 12 11 9 25 25 C 1.38235 * 119.99715 * 319.72439 * 24 12 11 26 26 C 1.38234 * 119.99723 * 179.76152 * 25 24 12 27 27 C 1.38230 * 120.00039 * 0.49168 * 26 25 24 28 28 C 1.38231 * 120.00212 * 359.78381 * 27 26 25 29 29 C 1.38230 * 120.00020 * 139.99782 * 24 12 11 30 30 C 1.47026 * 125.65017 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.46940 * 270.00349 * 1 2 3 32 32 H 1.09004 * 109.47155 * 30.00179 * 1 2 3 33 33 H 1.08998 * 109.46808 * 150.00698 * 1 2 3 34 34 H 1.09004 * 110.36312 * 322.93217 * 5 4 2 35 35 H 1.08999 * 110.36697 * 85.14047 * 5 4 2 36 36 H 1.08999 * 111.00665 * 204.91402 * 6 5 4 37 37 H 1.09011 * 111.00478 * 81.06317 * 6 5 4 38 38 H 0.97001 * 119.99618 * 0.02562 * 11 9 7 39 39 H 1.09004 * 109.47368 * 175.00371 * 14 12 11 40 40 H 1.09004 * 109.47108 * 55.00472 * 14 12 11 41 41 H 1.09000 * 109.46986 * 60.00254 * 15 14 12 42 42 H 1.08993 * 109.47662 * 300.00031 * 15 14 12 43 43 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 44 44 H 1.08003 * 120.00430 * 0.02562 * 25 24 12 45 45 H 1.08007 * 120.00024 * 180.25128 * 26 25 24 46 46 H 1.08003 * 120.00269 * 179.76448 * 27 26 25 47 47 H 1.07999 * 120.00597 * 179.97438 * 28 27 26 48 48 H 1.07997 * 120.00016 * 0.02562 * 29 24 12 49 49 H 1.08998 * 109.88545 * 59.55355 * 30 4 2 50 50 H 1.08997 * 110.00890 * 298.46341 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5731 -2.5103 0.0002 6 6 2.6546 -3.4351 0.6123 7 6 3.9550 -2.8231 0.0276 8 1 4.1414 -3.1966 -0.9794 9 6 5.1302 -3.1097 0.9265 10 8 4.9903 -3.8195 1.8998 11 7 6.3367 -2.5773 0.6486 12 6 7.4790 -2.8554 1.5226 13 1 7.4049 -3.8737 1.9043 14 6 8.7779 -2.7016 0.7288 15 6 8.8362 -3.7692 -0.3657 16 6 10.1153 -3.6172 -1.1479 17 1 10.8167 -2.8374 -0.8900 18 6 10.3901 -4.4736 -2.1929 19 7 11.5066 -4.3413 -2.8752 20 14 9.1768 -5.8219 -2.6395 21 1 9.4994 -7.0520 -1.8730 22 1 7.7992 -5.3781 -2.3065 23 1 9.2669 -6.1070 -4.0941 24 6 7.4772 -1.8853 2.6758 25 6 7.1551 -0.5581 2.4620 26 6 7.1486 0.3307 3.5207 27 6 7.4741 -0.1054 4.7913 28 6 7.8018 -1.4314 5.0042 29 6 7.8031 -2.3214 3.9464 30 6 3.6440 -1.3118 0.0011 31 1 -0.3633 0.0001 1.0277 32 1 -0.3634 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5137 34 1 0.6735 -2.5196 0.6156 35 1 1.3385 -2.8203 -1.0181 36 1 2.5229 -4.4644 0.2787 37 1 2.6496 -3.3751 1.7007 38 1 6.4485 -2.0093 -0.1298 39 1 9.6295 -2.8211 1.3986 40 1 8.8101 -1.7119 0.2731 41 1 7.9847 -3.6496 -1.0355 42 1 8.8040 -4.7588 0.0899 43 1 11.7001 -4.9441 -3.6102 44 1 6.9043 -0.2165 1.4686 45 1 6.8930 1.3669 3.3543 46 1 7.4728 0.5898 5.6178 47 1 8.0565 -1.7721 5.9968 48 1 8.0595 -3.3572 4.1126 49 1 4.0638 -0.8312 0.8848 50 1 4.0636 -0.8629 -0.8992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352180764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:56 Heat of formation + Delta-G solvation = -57.883778 kcal Electronic energy + Delta-G solvation = -30424.159274 eV Core-core repulsion = 26415.539855 eV Total energy + Delta-G solvation = -4008.619419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.72705 -39.78496 -38.81347 -37.27535 -35.83573 -33.25079 -32.59050 -31.58691 -30.75353 -30.64675 -30.16164 -29.04912 -26.86361 -24.32696 -23.59455 -22.73429 -22.29200 -20.91952 -20.12450 -19.98267 -19.64607 -17.67874 -17.26577 -16.99737 -16.66007 -16.34690 -15.77809 -15.63089 -15.28843 -14.88463 -14.47950 -14.24659 -14.19097 -13.73013 -13.67164 -13.42539 -13.24261 -13.18236 -12.99453 -12.88538 -12.78435 -12.66510 -12.52070 -12.28901 -11.98997 -11.83852 -11.63872 -11.29563 -11.20495 -11.12740 -11.03983 -10.82061 -10.22111 -10.12525 -10.03197 -9.84197 -9.70998 -9.26890 -8.99562 -8.94028 -8.77660 -8.59154 -8.51295 -6.09698 -4.08390 1.47456 1.53723 2.34171 2.53414 2.74308 3.25681 3.26241 3.33882 3.35637 3.93935 3.99767 4.16868 4.39507 4.50800 4.60611 4.83714 4.86068 4.91152 4.95280 4.99985 5.01139 5.03725 5.09781 5.17865 5.23170 5.24222 5.41906 5.44521 5.47268 5.53550 5.59758 5.63757 5.71209 5.75310 5.86282 5.91661 6.04617 6.13411 6.20590 6.40232 6.54313 6.60576 6.61636 6.72976 6.84290 7.12115 7.16932 7.19374 7.31038 7.60379 7.72887 7.85467 8.28824 8.47165 8.95319 9.52426 11.03651 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007694 B = 0.003743 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3638.165388 B = 7479.025644 C = 9820.539228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.545 6.545 4 N -0.619 5.619 5 C 0.097 3.903 6 C -0.111 4.111 7 C -0.127 4.127 8 H 0.115 0.885 9 C 0.526 3.474 10 O -0.536 6.536 11 N -0.711 5.711 12 C 0.179 3.821 13 H 0.095 0.905 14 C -0.105 4.105 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.288 1.288 24 C -0.081 4.081 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.128 4.128 28 C -0.121 4.121 29 C -0.106 4.106 30 C 0.117 3.883 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.012 0.988 43 H 0.263 0.737 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.074 0.926 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.497 5.465 9.220 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.422 6.422 4 N -0.355 5.355 5 C -0.026 4.026 6 C -0.150 4.150 7 C -0.149 4.149 8 H 0.133 0.867 9 C 0.311 3.689 10 O -0.412 6.412 11 N -0.361 5.361 12 C 0.075 3.925 13 H 0.112 0.888 14 C -0.143 4.143 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.191 1.191 23 H -0.214 1.214 24 C -0.082 4.082 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.146 4.146 28 C -0.139 4.139 29 C -0.125 4.125 30 C -0.006 4.006 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.093 0.907 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.206 5.522 9.756 23.987 hybrid contribution -0.345 -0.562 -0.786 1.025 sum -21.551 4.960 8.971 23.865 Atomic orbital electron populations 1.21884 0.91235 1.04909 1.04794 1.20533 0.90413 0.81921 0.75680 1.90750 1.70770 1.30653 1.50013 1.48550 1.07002 1.06183 1.73733 1.22460 0.97188 0.81554 1.01353 1.22681 0.90968 0.99047 1.02262 1.22457 0.94798 0.96277 1.01326 0.86707 1.20091 0.83688 0.79742 0.85372 1.90691 1.84250 1.37674 1.28629 1.46082 1.08837 1.51462 1.29754 1.20170 0.86603 0.97659 0.88048 0.88752 1.21805 0.93216 1.01273 0.97970 1.19571 0.97748 0.93777 0.93692 1.21117 1.03745 1.16781 1.14348 0.90971 1.25026 0.95093 0.97330 0.95954 1.69917 1.24244 1.38540 1.21370 0.86788 0.82325 0.82691 0.77489 1.20308 1.19118 1.21429 1.20313 0.98277 0.94695 0.94924 1.20915 0.99819 0.92850 0.98887 1.21095 1.00456 0.99417 0.93047 1.21074 1.00669 0.95920 0.96975 1.21079 1.00474 0.93626 0.98736 1.21014 0.99549 0.99784 0.92113 1.21814 0.81299 0.94297 1.03193 0.88799 0.88774 0.90115 0.90005 0.90745 0.88973 0.89048 0.76212 0.90826 0.91858 0.96498 0.97013 0.92705 0.86448 0.86429 0.86559 0.86341 0.86038 0.90745 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.67 36.01 0.35 -0.69 16 2 C 0.52 5.69 7.96 -10.99 -0.09 5.61 16 3 O -0.54 -8.39 17.43 5.55 0.10 -8.30 16 4 N -0.62 -5.98 3.33 -170.52 -0.57 -6.55 16 5 C 0.10 0.64 6.26 -2.53 -0.02 0.63 16 6 C -0.11 -0.95 6.14 -24.59 -0.15 -1.11 16 7 C -0.13 -1.29 3.34 -89.94 -0.30 -1.59 16 8 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 9 C 0.53 7.29 6.97 -10.98 -0.08 7.22 16 10 O -0.54 -9.14 15.42 5.56 0.09 -9.05 16 11 N -0.71 -9.91 3.72 -54.93 -0.20 -10.12 16 12 C 0.18 2.82 2.17 -69.09 -0.15 2.67 16 13 H 0.09 1.63 7.44 -51.93 -0.39 1.24 16 14 C -0.10 -1.90 4.67 -26.73 -0.12 -2.02 16 15 C -0.01 -0.23 3.93 -27.88 -0.11 -0.34 16 16 C -0.52 -14.29 9.66 -34.44 -0.33 -14.62 16 17 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 20 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.08 -1.20 4.91 -104.63 -0.51 -1.72 16 25 C -0.11 -1.48 9.32 -39.58 -0.37 -1.85 16 26 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 27 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 28 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 29 C -0.11 -1.51 9.67 -39.58 -0.38 -1.89 16 30 C 0.12 1.23 6.40 -3.06 -0.02 1.21 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.32 7.18 -51.93 -0.37 -0.05 16 34 H 0.08 0.39 7.55 -51.93 -0.39 -0.01 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.95 7.49 -51.92 -0.39 0.56 16 38 H 0.40 4.98 8.59 -40.82 -0.35 4.63 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.37 6.81 -51.93 -0.35 0.01 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.12 1.51 7.73 -52.48 -0.41 1.10 16 45 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.12 1.62 8.04 -52.49 -0.42 1.20 16 49 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 50 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 410.58 15.07 6.19 6.19 Total: -1.00 -35.57 410.58 -9.98 -45.55 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.11 Total: 4.79 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.58 Total: -12.51 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.00 Total: -43.21 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.18 Total: -17.35 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.57 -9.98 -45.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352180764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.337 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds