Wall clock time and date at job start Wed Apr 1 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00044 * 2 1 4 4 N 1.34780 * 120.00219 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99758 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46592 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47234 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.52023 * 54.91672 * 7 6 5 9 9 C 1.53034 * 109.49976 * 174.99894 * 7 6 5 10 10 C 1.53046 * 109.52880 * 181.31082 * 9 7 6 11 11 C 1.53188 * 109.30995 * 298.64560 * 10 9 7 12 12 N 1.46923 * 108.78129 * 54.63014 * 11 10 9 13 13 C 1.34782 * 120.63379 * 126.40954 * 12 11 10 14 14 O 1.21542 * 120.00368 * 175.71347 * 13 12 11 15 15 C 1.47890 * 119.99491 * 355.71304 * 13 12 11 16 16 C 1.39923 * 120.02221 * 226.13778 * 15 13 12 17 17 C 1.38330 * 120.35617 * 179.97438 * 16 15 13 18 18 C 1.37756 * 120.41155 * 0.03211 * 17 16 15 19 19 C 1.40749 * 120.03850 * 359.97438 * 18 17 16 20 20 C 1.41440 * 120.17575 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00429 * 205.04461 * 20 19 18 22 22 C 1.39945 * 119.99775 * 25.04798 * 20 19 18 23 23 N 1.30828 * 120.00040 * 17.08920 * 22 20 19 24 24 Si 1.86795 * 119.99604 * 197.08875 * 22 20 19 25 25 H 1.48499 * 109.47095 * 90.00328 * 24 22 20 26 26 H 1.48510 * 109.46753 * 210.00052 * 24 22 20 27 27 H 1.48494 * 109.47611 * 329.99932 * 24 22 20 28 28 C 1.38991 * 120.02420 * 45.87564 * 15 13 12 29 29 C 1.46928 * 118.74181 * 306.39779 * 12 11 10 30 30 H 1.08992 * 109.47400 * 239.99841 * 1 2 3 31 31 H 1.08996 * 109.47239 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46568 * 119.99838 * 1 2 3 33 33 H 0.96994 * 119.99571 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.46981 * 60.00134 * 5 4 2 35 35 H 1.08998 * 109.47201 * 299.99494 * 5 4 2 36 36 H 1.09003 * 109.47635 * 60.00043 * 6 5 4 37 37 H 1.09003 * 109.47702 * 299.99606 * 6 5 4 38 38 H 1.08996 * 109.46152 * 61.29850 * 9 7 6 39 39 H 1.09001 * 109.46105 * 301.32445 * 9 7 6 40 40 H 1.09002 * 109.49512 * 58.59112 * 10 9 7 41 41 H 1.08991 * 109.50105 * 178.65975 * 10 9 7 42 42 H 1.09005 * 109.58672 * 174.42136 * 11 10 9 43 43 H 1.08998 * 109.58945 * 294.84357 * 11 10 9 44 44 H 1.08001 * 119.81948 * 0.02562 * 16 15 13 45 45 H 1.07998 * 119.79149 * 180.02562 * 17 16 15 46 46 H 1.07998 * 119.97791 * 180.02562 * 18 17 16 47 47 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 48 48 H 1.07997 * 120.20719 * 359.97438 * 28 15 13 49 49 H 1.08995 * 109.58905 * 173.39451 * 29 12 11 50 50 H 1.09001 * 109.58004 * 293.67707 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1559 -2.6095 -0.0001 7 6 5.6860 -2.6096 -0.0001 8 1 6.0502 -2.0192 0.8406 9 6 6.1968 -4.0467 0.1255 10 6 7.7269 -4.0448 0.1584 11 6 8.2609 -3.4541 -1.1502 12 7 7.6600 -2.1285 -1.3509 13 6 8.4362 -1.0483 -1.5682 14 8 7.9260 0.0280 -1.8101 15 6 9.9088 -1.1728 -1.5124 16 6 10.6648 -0.2302 -0.8069 17 6 12.0425 -0.3402 -0.7497 18 6 12.6862 -1.3782 -1.3869 19 6 11.9424 -2.3358 -2.1016 20 6 12.6003 -3.4029 -2.7565 21 1 12.1356 -3.8853 -3.6037 22 6 13.8535 -3.8338 -2.3067 23 7 14.2694 -3.5011 -1.1117 24 14 14.9322 -4.8840 -3.4124 25 1 15.8049 -4.0053 -4.2318 26 1 15.7741 -5.7784 -2.5777 27 1 14.0753 -5.7033 -4.3066 28 6 10.5424 -2.2292 -2.1562 29 6 6.1966 -2.0027 -1.3104 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3632 -0.5138 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 4.0089 -0.6538 0.8905 35 1 4.0096 -0.6527 -0.8895 36 1 3.7930 -3.1233 -0.8903 37 1 3.7923 -3.1237 0.8897 38 1 5.8527 -4.6303 -0.7283 39 1 5.8143 -4.4889 1.0455 40 1 8.0719 -3.4408 0.9976 41 1 8.0896 -5.0662 0.2718 42 1 9.3453 -3.3588 -1.0924 43 1 7.9932 -4.1062 -1.9816 44 1 10.1699 0.5872 -0.3035 45 1 12.6171 0.3922 -0.2021 46 1 13.7621 -1.4576 -1.3374 47 1 15.1378 -3.8001 -0.7998 48 1 9.9625 -2.9616 -2.6981 49 1 5.9189 -0.9498 -1.3583 50 1 5.7607 -2.5344 -2.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360421115.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:47 Heat of formation + Delta-G solvation = -70.421775 kcal Electronic energy + Delta-G solvation = -29803.092763 eV Core-core repulsion = 25793.929655 eV Total energy + Delta-G solvation = -4009.163108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.14341 -39.68451 -37.87471 -36.91056 -35.57343 -33.79094 -33.44148 -31.91338 -30.59500 -29.99138 -29.75548 -27.75653 -25.53690 -25.33883 -23.94612 -22.21375 -21.53983 -20.94720 -20.81124 -20.07367 -19.00495 -17.35277 -17.02151 -16.43555 -16.17671 -16.00315 -15.63113 -15.36396 -14.92698 -14.82189 -14.43520 -14.18738 -14.00803 -13.70258 -13.60962 -13.35871 -13.11718 -12.95402 -12.81985 -12.57046 -12.50005 -12.46200 -12.13632 -11.92494 -11.71559 -11.49366 -11.25592 -11.22583 -11.05198 -10.86064 -10.73662 -10.59152 -10.45755 -10.41433 -10.26558 -10.08483 -9.56900 -9.32134 -9.27772 -9.02940 -8.30350 -7.59947 -7.52441 -6.85766 -4.48186 2.33871 2.40446 2.69292 2.94672 3.02112 3.05141 3.10987 3.35369 3.63930 3.86327 4.42907 4.51599 4.52333 4.61158 4.75727 4.89694 4.97754 4.99475 5.03370 5.19373 5.24614 5.36120 5.42185 5.45140 5.50215 5.53068 5.66593 5.69647 5.74673 5.81428 5.87856 6.02055 6.10507 6.11084 6.16051 6.17189 6.28577 6.37279 6.40599 6.72646 6.88400 6.89566 7.01749 7.14348 7.21819 7.33306 7.61907 7.79527 7.87392 7.94562 7.97778 8.07606 8.47526 8.74163 8.76387 8.80265 10.08944 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.002197 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.164618 B =12739.916991 C =13512.759289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.505 3.495 3 O -0.543 6.543 4 N -0.733 5.733 5 C 0.112 3.888 6 C -0.121 4.121 7 C -0.099 4.099 8 H 0.078 0.922 9 C -0.111 4.111 10 C -0.135 4.135 11 C 0.087 3.913 12 N -0.611 5.611 13 C 0.569 3.431 14 O -0.553 6.553 15 C -0.107 4.107 16 C -0.184 4.184 17 C -0.111 4.111 18 C -0.141 4.141 19 C 0.103 3.897 20 C -0.463 4.463 21 H 0.079 0.921 22 C 0.076 3.924 23 N -0.794 5.794 24 Si 0.909 3.091 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.198 4.198 29 C 0.115 3.885 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.123 0.877 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.122 0.878 47 H 0.282 0.718 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 -5.530 3.922 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.292 3.708 3 O -0.420 6.420 4 N -0.385 5.385 5 C -0.012 4.012 6 C -0.159 4.159 7 C -0.119 4.119 8 H 0.097 0.903 9 C -0.149 4.149 10 C -0.173 4.173 11 C -0.035 4.035 12 N -0.344 5.344 13 C 0.361 3.639 14 O -0.432 6.432 15 C -0.110 4.110 16 C -0.204 4.204 17 C -0.129 4.129 18 C -0.160 4.160 19 C 0.101 3.899 20 C -0.492 4.492 21 H 0.097 0.903 22 C -0.141 4.141 23 N -0.419 5.419 24 Si 0.733 3.267 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.218 4.218 29 C -0.008 4.008 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.140 0.860 47 H 0.093 0.907 48 H 0.121 0.879 49 H 0.109 0.891 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.918 -4.230 3.950 19.784 hybrid contribution 0.297 -1.072 -0.350 1.166 sum -18.621 -5.302 3.600 19.693 Atomic orbital electron populations 1.21914 0.91735 1.05561 1.04118 1.20846 0.90637 0.83569 0.75791 1.90770 1.70874 1.31409 1.48922 1.46083 1.07690 1.08683 1.76069 1.21506 0.79092 0.97451 1.03103 1.21783 0.95681 0.95582 1.02871 1.21462 0.93557 0.97694 0.99144 0.90326 1.21560 0.96137 0.95390 1.01796 1.21921 0.95044 1.01565 0.98772 1.22339 1.02184 0.82671 0.96320 1.47978 1.05693 1.08609 1.72096 1.19006 0.87797 0.82616 0.74525 1.90682 1.75740 1.27459 1.49279 1.19252 0.89957 0.98345 1.03422 1.20332 0.93652 1.00077 1.06369 1.20663 0.93621 0.98309 1.00344 1.21529 1.00155 0.93660 1.00700 1.17530 0.90210 0.91753 0.90397 1.19547 1.01500 1.14547 1.13611 0.90274 1.25894 0.97924 0.95791 0.94537 1.69796 1.19340 1.37467 1.15332 0.86299 0.79939 0.79794 0.80643 1.19258 1.20310 1.18600 1.21174 0.94703 0.98758 1.07182 1.21595 0.80639 1.02520 0.96074 0.89489 0.88995 0.89444 0.76654 0.91321 0.90872 0.91009 0.90945 0.91830 0.91910 0.91409 0.90651 0.85914 0.91955 0.88695 0.88647 0.86011 0.90737 0.87893 0.89125 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.32 36.00 0.37 -0.56 16 2 C 0.50 5.09 7.94 -10.98 -0.09 5.00 16 3 O -0.54 -8.50 17.09 5.55 0.09 -8.41 16 4 N -0.73 -5.76 5.56 -60.29 -0.33 -6.10 16 5 C 0.11 1.10 5.44 -4.04 -0.02 1.07 16 6 C -0.12 -0.92 4.80 -26.73 -0.13 -1.05 16 7 C -0.10 -1.04 2.34 -90.52 -0.21 -1.25 16 8 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 9 C -0.11 -1.08 5.17 -26.69 -0.14 -1.22 16 10 C -0.13 -1.64 6.08 -26.61 -0.16 -1.81 16 11 C 0.09 1.31 5.20 -3.71 -0.02 1.30 16 12 N -0.61 -10.32 2.97 -173.88 -0.52 -10.84 16 13 C 0.57 12.10 7.29 -12.31 -0.09 12.01 16 14 O -0.55 -13.20 16.43 5.33 0.09 -13.12 16 15 C -0.11 -2.42 5.19 -105.04 -0.54 -2.97 16 16 C -0.18 -4.24 9.70 -38.92 -0.38 -4.62 16 17 C -0.11 -2.55 10.01 -39.72 -0.40 -2.94 16 18 C -0.14 -3.49 8.69 -38.81 -0.34 -3.83 16 19 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 20 C -0.46 -11.45 9.05 -37.72 -0.34 -11.79 16 21 H 0.08 1.88 7.90 -52.49 -0.41 1.47 16 22 C 0.08 1.80 5.15 -17.34 -0.09 1.72 16 23 N -0.79 -19.33 10.94 55.55 0.61 -18.72 16 24 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 27 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 28 C -0.20 -4.54 7.06 -38.44 -0.27 -4.81 16 29 C 0.11 1.57 5.31 -3.72 -0.02 1.55 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.40 1.74 8.47 -40.82 -0.35 1.39 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.88 6.70 -51.93 -0.35 0.53 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.12 2.21 4.22 -51.93 -0.22 1.99 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 46 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 47 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 48 H 0.10 2.18 6.56 -52.49 -0.34 1.84 16 49 H 0.09 1.42 5.75 -51.93 -0.30 1.12 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -31.80 400.17 -10.29 -42.09 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.77 Total: 8.55 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.46 Total: -12.21 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.24 Total: -35.66 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.18 Total: -21.53 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.80 -10.29 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421115.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.330 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds