Wall clock time and date at job start Wed Apr 1 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00044 * 2 1 4 4 N 1.34780 * 120.00219 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99758 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46592 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47234 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.52023 * 54.91672 * 7 6 5 9 9 C 1.53034 * 109.49976 * 174.99894 * 7 6 5 10 10 C 1.53046 * 109.52880 * 181.31082 * 9 7 6 11 11 C 1.53188 * 109.30995 * 298.64560 * 10 9 7 12 12 N 1.46923 * 108.78129 * 54.63014 * 11 10 9 13 13 C 1.34782 * 120.63379 * 126.40954 * 12 11 10 14 14 O 1.21542 * 120.00368 * 175.71347 * 13 12 11 15 15 C 1.47890 * 119.99491 * 355.71304 * 13 12 11 16 16 C 1.39923 * 120.02221 * 226.13778 * 15 13 12 17 17 C 1.38330 * 120.35617 * 179.97438 * 16 15 13 18 18 C 1.37756 * 120.41155 * 0.03211 * 17 16 15 19 19 C 1.40749 * 120.03850 * 359.97438 * 18 17 16 20 20 C 1.41440 * 120.17575 * 180.02562 * 19 18 17 21 21 H 1.07995 * 120.00429 * 205.04461 * 20 19 18 22 22 C 1.39945 * 119.99775 * 25.04798 * 20 19 18 23 23 N 1.30828 * 120.00040 * 17.08920 * 22 20 19 24 24 Si 1.86795 * 119.99604 * 197.08875 * 22 20 19 25 25 H 1.48499 * 109.47095 * 90.00328 * 24 22 20 26 26 H 1.48510 * 109.46753 * 210.00052 * 24 22 20 27 27 H 1.48494 * 109.47611 * 329.99932 * 24 22 20 28 28 C 1.38991 * 120.02420 * 45.87564 * 15 13 12 29 29 C 1.46928 * 118.74181 * 306.39779 * 12 11 10 30 30 H 1.08992 * 109.47400 * 239.99841 * 1 2 3 31 31 H 1.08996 * 109.47239 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46568 * 119.99838 * 1 2 3 33 33 H 0.96994 * 119.99571 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.46981 * 60.00134 * 5 4 2 35 35 H 1.08998 * 109.47201 * 299.99494 * 5 4 2 36 36 H 1.09003 * 109.47635 * 60.00043 * 6 5 4 37 37 H 1.09003 * 109.47702 * 299.99606 * 6 5 4 38 38 H 1.08996 * 109.46152 * 61.29850 * 9 7 6 39 39 H 1.09001 * 109.46105 * 301.32445 * 9 7 6 40 40 H 1.09002 * 109.49512 * 58.59112 * 10 9 7 41 41 H 1.08991 * 109.50105 * 178.65975 * 10 9 7 42 42 H 1.09005 * 109.58672 * 174.42136 * 11 10 9 43 43 H 1.08998 * 109.58945 * 294.84357 * 11 10 9 44 44 H 1.08001 * 119.81948 * 0.02562 * 16 15 13 45 45 H 1.07998 * 119.79149 * 180.02562 * 17 16 15 46 46 H 1.07998 * 119.97791 * 180.02562 * 18 17 16 47 47 H 0.96996 * 119.99743 * 179.97438 * 23 22 20 48 48 H 1.07997 * 120.20719 * 359.97438 * 28 15 13 49 49 H 1.08995 * 109.58905 * 173.39451 * 29 12 11 50 50 H 1.09001 * 109.58004 * 293.67707 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 0.0000 6 6 4.1559 -2.6095 -0.0001 7 6 5.6860 -2.6096 -0.0001 8 1 6.0502 -2.0192 0.8406 9 6 6.1968 -4.0467 0.1255 10 6 7.7269 -4.0448 0.1584 11 6 8.2609 -3.4541 -1.1502 12 7 7.6600 -2.1285 -1.3509 13 6 8.4362 -1.0483 -1.5682 14 8 7.9260 0.0280 -1.8101 15 6 9.9088 -1.1728 -1.5124 16 6 10.6648 -0.2302 -0.8069 17 6 12.0425 -0.3402 -0.7497 18 6 12.6862 -1.3782 -1.3869 19 6 11.9424 -2.3358 -2.1016 20 6 12.6003 -3.4029 -2.7565 21 1 12.1356 -3.8853 -3.6037 22 6 13.8535 -3.8338 -2.3067 23 7 14.2694 -3.5011 -1.1117 24 14 14.9322 -4.8840 -3.4124 25 1 15.8049 -4.0053 -4.2318 26 1 15.7741 -5.7784 -2.5777 27 1 14.0753 -5.7033 -4.3066 28 6 10.5424 -2.2292 -2.1562 29 6 6.1966 -2.0027 -1.3104 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3632 -0.5138 -0.8900 33 1 1.6959 -2.0072 -0.0005 34 1 4.0089 -0.6538 0.8905 35 1 4.0096 -0.6527 -0.8895 36 1 3.7930 -3.1233 -0.8903 37 1 3.7923 -3.1237 0.8897 38 1 5.8527 -4.6303 -0.7283 39 1 5.8143 -4.4889 1.0455 40 1 8.0719 -3.4408 0.9976 41 1 8.0896 -5.0662 0.2718 42 1 9.3453 -3.3588 -1.0924 43 1 7.9932 -4.1062 -1.9816 44 1 10.1699 0.5872 -0.3035 45 1 12.6171 0.3922 -0.2021 46 1 13.7621 -1.4576 -1.3374 47 1 15.1378 -3.8001 -0.7998 48 1 9.9625 -2.9616 -2.6981 49 1 5.9189 -0.9498 -1.3583 50 1 5.7607 -2.5344 -2.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360421115.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:46 Heat of formation + Delta-G solvation = -89.852069 kcal Electronic energy + Delta-G solvation = -29803.935324 eV Core-core repulsion = 25793.929655 eV Total energy + Delta-G solvation = -4010.005669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51377 -40.60694 -39.29583 -38.55219 -36.57430 -35.55999 -34.58551 -32.96564 -31.93145 -31.74047 -30.90085 -28.63226 -27.25992 -26.77322 -24.90691 -23.78554 -22.72266 -22.38191 -21.87972 -21.13825 -20.44152 -18.97503 -17.87253 -17.73374 -17.41811 -17.10083 -17.06566 -16.60850 -16.50986 -16.20540 -15.71428 -15.38465 -15.13986 -14.85383 -14.79979 -14.53573 -14.38431 -14.24864 -14.07353 -13.87572 -13.55785 -13.46339 -13.25526 -13.05349 -12.91151 -12.83183 -12.77607 -12.57073 -12.32316 -12.23473 -12.05418 -11.93424 -11.75938 -11.63935 -11.37832 -11.37209 -11.06557 -10.96520 -10.71962 -10.13158 -9.70555 -9.45152 -9.35128 -8.64957 -6.37644 0.52325 0.90452 1.42164 1.50497 1.54660 1.63903 1.79690 2.07572 2.22533 2.28598 2.71629 3.54746 3.62821 3.75546 3.80677 3.84726 3.99083 4.10447 4.18741 4.26297 4.27970 4.36690 4.42057 4.51322 4.52841 4.61358 4.64531 4.68741 4.78512 4.87384 4.89324 4.94496 4.97164 5.00501 5.05924 5.11580 5.13242 5.16376 5.21524 5.28529 5.31776 5.43838 5.47130 5.48609 5.63841 5.78777 5.97654 6.01204 6.19054 6.35145 6.59235 6.59672 6.88557 6.91764 7.13492 7.29595 8.32018 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.002197 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.164618 B =12739.916991 C =13512.759289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.495 3.505 3 O -0.611 6.611 4 N -0.715 5.715 5 C 0.112 3.888 6 C -0.103 4.103 7 C -0.092 4.092 8 H 0.057 0.943 9 C -0.102 4.102 10 C -0.132 4.132 11 C 0.083 3.917 12 N -0.600 5.600 13 C 0.562 3.438 14 O -0.590 6.590 15 C -0.111 4.111 16 C -0.200 4.200 17 C -0.109 4.109 18 C -0.165 4.165 19 C 0.079 3.921 20 C -0.488 4.488 21 H 0.082 0.918 22 C 0.039 3.961 23 N -0.821 5.821 24 Si 0.981 3.019 25 H -0.267 1.267 26 H -0.269 1.269 27 H -0.256 1.256 28 C -0.191 4.191 29 C 0.109 3.891 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.421 0.579 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.290 0.710 48 H 0.117 0.883 49 H 0.064 0.936 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.487 -8.974 3.833 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.284 3.716 3 O -0.493 6.493 4 N -0.368 5.368 5 C -0.012 4.012 6 C -0.141 4.141 7 C -0.112 4.112 8 H 0.076 0.924 9 C -0.140 4.140 10 C -0.170 4.170 11 C -0.039 4.039 12 N -0.331 5.331 13 C 0.353 3.647 14 O -0.473 6.473 15 C -0.114 4.114 16 C -0.220 4.220 17 C -0.127 4.127 18 C -0.185 4.185 19 C 0.076 3.924 20 C -0.517 4.517 21 H 0.100 0.900 22 C -0.177 4.177 23 N -0.446 5.446 24 Si 0.802 3.198 25 H -0.192 1.192 26 H -0.193 1.193 27 H -0.179 1.179 28 C -0.211 4.211 29 C -0.013 4.013 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.259 0.741 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.100 0.900 48 H 0.134 0.866 49 H 0.082 0.918 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.165 -7.762 3.883 22.876 hybrid contribution 0.937 -0.010 -0.283 0.979 sum -20.228 -7.772 3.601 21.967 Atomic orbital electron populations 1.21916 0.87643 1.05913 1.06721 1.21809 0.92654 0.82919 0.74240 1.90744 1.72533 1.33852 1.52183 1.45937 1.06884 1.09346 1.74637 1.21353 0.80406 0.98792 1.00647 1.21679 0.93041 0.94014 1.05406 1.21406 0.95671 0.98002 0.96153 0.92431 1.21540 0.93729 0.94581 1.04113 1.21907 0.97270 1.01826 0.95978 1.22433 1.00422 0.81970 0.99079 1.48050 1.07002 1.08168 1.69911 1.18863 0.87553 0.83298 0.75036 1.90657 1.76095 1.28991 1.51513 1.19503 0.91233 0.97971 1.02735 1.20509 0.93921 1.00599 1.07014 1.20863 0.93792 0.98214 0.99840 1.21503 0.99705 0.94794 1.02450 1.17878 0.91212 0.92293 0.90989 1.19790 1.02812 1.15045 1.14100 0.89988 1.26711 0.98600 0.96806 0.95594 1.69845 1.19994 1.38131 1.16650 0.85212 0.77927 0.78062 0.78623 1.19187 1.19330 1.17929 1.21271 0.94148 0.98907 1.06795 1.21875 0.78469 1.01811 0.99108 0.86609 0.89893 0.86760 0.74060 0.93704 0.93816 0.88600 0.88061 0.89718 0.89246 0.93323 0.88761 0.89142 0.89707 0.88364 0.86465 0.87146 0.89952 0.86556 0.91793 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.32 71.24 0.74 -0.62 16 2 C 0.49 9.66 7.94 87.66 0.70 10.36 16 3 O -0.61 -20.11 17.09 -3.04 -0.05 -20.16 16 4 N -0.71 -9.96 5.56 -463.06 -2.57 -12.53 16 5 C 0.11 2.15 5.44 86.38 0.47 2.62 16 6 C -0.10 -1.24 4.80 30.59 0.15 -1.09 16 7 C -0.09 -1.76 2.34 -10.73 -0.03 -1.78 16 8 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 9 C -0.10 -1.58 5.17 30.62 0.16 -1.42 16 10 C -0.13 -2.94 6.08 30.67 0.19 -2.75 16 11 C 0.08 2.41 5.20 86.36 0.45 2.86 16 12 N -0.60 -20.36 2.97 -822.33 -2.44 -22.81 16 13 C 0.56 24.76 7.29 86.80 0.63 25.39 16 14 O -0.59 -29.56 16.43 -3.85 -0.06 -29.63 16 15 C -0.11 -5.25 5.19 -20.13 -0.10 -5.35 16 16 C -0.20 -9.60 9.70 22.70 0.22 -9.38 16 17 C -0.11 -5.17 10.01 22.18 0.22 -4.94 16 18 C -0.16 -8.48 8.69 22.77 0.20 -8.28 16 19 C 0.08 4.06 5.57 -21.32 -0.12 3.94 16 20 C -0.49 -24.57 9.05 23.47 0.21 -24.36 16 21 H 0.08 3.94 7.90 -2.91 -0.02 3.92 16 22 C 0.04 1.82 5.15 85.26 0.44 2.26 16 23 N -0.82 -40.45 10.94 21.83 0.24 -40.21 16 24 Si 0.98 35.94 29.59 68.60 2.03 37.97 16 25 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 26 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 27 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 28 C -0.19 -9.02 7.06 23.01 0.16 -8.86 16 29 C 0.11 2.92 5.31 86.35 0.46 3.38 16 30 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.42 2.10 8.47 -92.71 -0.79 1.31 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.11 6.70 -2.39 -0.02 1.09 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 3.30 4.22 -2.38 -0.01 3.29 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 45 H 0.12 4.89 8.06 -2.91 -0.02 4.86 16 46 H 0.11 5.85 6.16 -2.91 -0.02 5.83 16 47 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 48 H 0.12 5.02 6.56 -2.91 -0.02 5.00 16 49 H 0.06 2.09 5.75 -2.39 -0.01 2.08 16 50 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.37 400.17 2.44 -72.93 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.17 Total: 32.46 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.14 Total: -18.03 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -4.78 Total: -75.54 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.12 Total: -49.79 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -75.37 2.44 -72.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421115.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.924 kcal (2) G-P(sol) polarization free energy of solvation -75.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds