Wall clock time and date at job start Wed Apr 1 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48039 * 110.99719 * 2 1 4 4 C 1.54385 * 107.02381 * 214.48544 * 3 2 1 5 5 C 1.52919 * 104.66626 * 2.23368 * 4 3 2 6 6 C 1.53466 * 112.16886 * 258.62341 * 5 4 3 7 7 C 1.54631 * 102.74300 * 272.18619 * 6 5 4 8 8 N 1.47153 * 107.34665 * 339.35496 * 7 6 5 9 9 C 1.34777 * 125.60012 * 179.06180 * 8 7 6 10 10 O 1.21280 * 119.99930 * 180.02562 * 9 8 7 11 11 C 1.50698 * 119.99885 * 0.02562 * 9 8 7 12 12 C 1.50707 * 109.46935 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93061 * 269.72654 * 12 11 9 14 14 C 1.38099 * 120.06662 * 179.72677 * 13 12 11 15 15 C 1.38874 * 119.92805 * 0.54772 * 14 13 12 16 16 O 1.35753 * 120.07080 * 179.75044 * 15 14 13 17 17 C 1.34825 * 117.00661 * 174.44500 * 16 15 14 18 18 H 1.08004 * 119.99551 * 5.05637 * 17 16 15 19 19 C 1.38647 * 120.00487 * 185.05600 * 17 16 15 20 20 N 1.31562 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00326 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46862 * 60.00216 * 21 19 17 23 23 H 1.48501 * 109.47439 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47277 * 300.00292 * 21 19 17 25 25 C 1.38876 * 119.86568 * 359.72709 * 15 14 13 26 26 C 1.38098 * 119.93171 * 0.02562 * 25 15 14 27 27 C 1.47757 * 108.79985 * 359.08343 * 8 7 6 28 28 C 1.48848 * 110.99916 * 242.29393 * 2 1 3 29 29 H 1.09000 * 109.47236 * 59.87693 * 1 2 3 30 30 H 1.09000 * 109.46944 * 179.87214 * 1 2 3 31 31 H 1.09000 * 109.47383 * 299.87357 * 1 2 3 32 32 H 1.08994 * 109.92637 * 95.13919 * 3 2 1 33 33 H 1.09001 * 109.92611 * 333.82351 * 3 2 1 34 34 H 1.08994 * 110.40098 * 121.03389 * 4 3 2 35 35 H 1.09003 * 110.39388 * 243.32566 * 4 3 2 36 36 H 1.08988 * 110.76055 * 30.50421 * 6 5 4 37 37 H 1.09001 * 110.75192 * 153.69424 * 6 5 4 38 38 H 1.08998 * 109.86724 * 98.79426 * 7 6 5 39 39 H 1.09004 * 109.87309 * 219.77433 * 7 6 5 40 40 H 1.08991 * 109.47332 * 300.00143 * 11 9 8 41 41 H 1.09005 * 109.47028 * 60.00461 * 11 9 8 42 42 H 1.08000 * 119.96548 * 0.02562 * 13 12 11 43 43 H 1.07999 * 120.03449 * 180.28005 * 14 13 12 44 44 H 0.96997 * 120.00529 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.03577 * 180.02562 * 25 15 14 46 46 H 1.07997 * 119.97195 * 180.02562 * 26 25 15 47 47 H 1.09003 * 110.39501 * 263.53656 * 27 8 7 48 48 H 1.09000 * 110.39413 * 141.13695 * 27 8 7 49 49 H 1.08998 * 110.69520 * 39.59974 * 28 2 1 50 50 H 1.09002 * 110.83903 * 276.46634 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 3.2974 1.3681 -0.8358 5 6 3.4190 -0.0712 -1.3380 6 6 4.4324 -0.8854 -0.5224 7 6 5.7658 -0.5987 -1.2511 8 7 5.4336 -0.1379 -2.6085 9 6 6.3232 0.2305 -3.5517 10 8 5.9356 0.5956 -4.6413 11 6 7.7996 0.1886 -3.2522 12 6 8.5710 0.6452 -4.4637 13 6 8.9772 -0.2769 -5.4110 14 6 9.6793 0.1392 -6.5250 15 6 9.9872 1.4835 -6.6878 16 8 10.6817 1.8950 -7.7792 17 6 10.8472 3.2241 -7.9343 18 1 10.5070 3.9037 -7.1670 19 6 11.4543 3.7183 -9.0787 20 7 11.8683 2.8904 -10.0136 21 14 11.6830 5.5597 -9.2938 22 1 12.5209 6.0870 -8.1870 23 1 12.3530 5.8271 -10.5918 24 1 10.3575 6.2289 -9.2732 25 6 9.5828 2.4063 -5.7319 26 6 8.8765 1.9847 -4.6226 27 6 3.9647 -0.1448 -2.7677 28 6 2.0024 -0.6461 -1.2303 29 1 -0.3634 0.5157 -0.8889 30 1 -0.3633 -1.0277 -0.0023 31 1 -0.3634 0.5119 0.8911 32 1 2.2183 1.6960 1.0206 33 1 1.2740 2.0584 -0.4521 34 1 3.2159 2.0579 -1.6757 35 1 4.1532 1.6285 -0.2129 36 1 4.4716 -0.5326 0.5080 37 1 4.1911 -1.9478 -0.5564 38 1 6.3181 0.1774 -0.7211 39 1 6.3632 -1.5089 -1.3024 40 1 8.0187 0.8472 -2.4120 41 1 8.0903 -0.8312 -3.0000 42 1 8.7409 -1.3228 -5.2818 43 1 9.9924 -0.5807 -7.2667 44 1 12.2933 3.2361 -10.8141 45 1 9.8204 3.4525 -5.8559 46 1 8.5614 2.7017 -3.8791 47 1 3.6394 -1.0659 -3.2514 48 1 3.6408 0.7224 -3.3431 49 1 1.4070 -0.3688 -2.1001 50 1 2.0343 -1.7297 -1.1166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366445513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:57 Heat of formation + Delta-G solvation = -24.883949 kcal Electronic energy + Delta-G solvation = -29416.721739 eV Core-core repulsion = 25409.533300 eV Total energy + Delta-G solvation = -4007.188440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92713 -39.38249 -38.63648 -36.89615 -36.25000 -32.92178 -32.36838 -31.26233 -30.35909 -30.09223 -29.68221 -27.50656 -26.25673 -25.15934 -24.29742 -23.23731 -21.91349 -21.62955 -20.76502 -19.74175 -19.13564 -17.92336 -17.05213 -16.90683 -16.24878 -16.05311 -15.97385 -15.21326 -14.78420 -14.58916 -14.51063 -14.42193 -14.12535 -13.81899 -13.58470 -13.50453 -13.38958 -13.21498 -12.98323 -12.82644 -12.64266 -12.45093 -12.29735 -12.02768 -11.96470 -11.78097 -11.65586 -11.46350 -11.28590 -11.19903 -10.98059 -10.90922 -10.78458 -10.68802 -10.58576 -10.39534 -9.67007 -9.27386 -8.91840 -8.76662 -8.71575 -8.09023 -7.10493 -6.39504 -3.98098 2.29820 2.31420 2.79511 2.96455 3.16320 3.18564 3.20522 3.48401 3.99420 4.01398 4.11139 4.12653 4.50458 4.57274 4.71958 4.77947 4.81103 4.92529 4.94954 4.99199 5.13928 5.18339 5.19822 5.25856 5.28587 5.31112 5.33881 5.38063 5.39219 5.42622 5.48916 5.55303 5.57191 5.66622 5.71950 5.77713 5.79344 5.81767 5.90887 6.17970 6.27641 6.35410 6.47829 6.51902 6.76270 6.97515 7.11046 7.29780 7.43019 7.46871 7.51310 7.90014 8.05717 8.31909 9.06069 9.77060 10.78599 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.001870 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.347101 B =14966.744012 C =15586.701961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.035 3.965 4 C -0.116 4.116 5 C -0.077 4.077 6 C -0.108 4.108 7 C 0.100 3.900 8 N -0.627 5.627 9 C 0.526 3.474 10 O -0.519 6.519 11 C -0.074 4.074 12 C -0.170 4.170 13 C -0.060 4.060 14 C -0.191 4.191 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.056 4.056 27 C 0.121 3.879 28 C 0.050 3.950 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.050 0.950 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 -7.024 23.500 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.093 4.093 4 C -0.153 4.153 5 C -0.078 4.078 6 C -0.146 4.146 7 C -0.023 4.023 8 N -0.365 5.365 9 C 0.315 3.685 10 O -0.393 6.393 11 C -0.113 4.113 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.210 4.210 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.075 4.075 27 C -0.002 4.002 28 C -0.078 4.078 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.069 0.931 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.659 -7.170 22.867 30.373 hybrid contribution -0.330 1.414 -0.739 1.629 sum -18.989 -5.757 22.128 29.722 Atomic orbital electron populations 1.22528 0.87749 1.02255 1.00847 1.64789 1.08125 1.14950 1.36617 1.22995 0.95823 0.89722 1.00732 1.22255 0.97902 0.95387 0.99803 1.21452 0.95128 0.96050 0.95204 1.22414 0.92480 1.00421 0.99247 1.22120 0.97772 0.99657 0.82778 1.48700 1.06201 1.67729 1.13838 1.20782 0.88195 0.76349 0.83199 1.90754 1.80377 1.45576 1.22632 1.20379 0.89685 1.02985 0.98295 1.18651 1.06591 0.93966 0.97919 1.20397 0.96572 0.97776 0.93047 1.20151 1.06838 0.93768 1.00285 1.19375 0.89771 0.92915 0.87654 1.83974 1.61391 1.25961 1.36874 1.21274 1.40634 0.79442 1.05361 0.89165 1.25278 0.96433 1.00326 0.94510 1.70032 1.36999 1.34872 1.07989 0.85789 0.78898 0.80705 0.78074 1.19541 1.20303 1.19528 1.21099 1.07072 1.00334 0.96653 1.20499 0.96284 0.94193 0.96507 1.21930 0.80670 1.02345 0.95270 1.22986 0.93353 0.99953 0.91469 0.95312 0.91183 0.91268 0.90166 0.93606 0.90934 0.90409 0.89493 0.90271 0.91375 0.91227 0.89157 0.89096 0.87414 0.86541 0.92038 0.85603 0.87887 0.91487 0.90442 0.93142 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.39 60.06 0.56 0.65 16 2 N -0.52 -3.51 5.56 -239.16 -1.33 -4.84 16 3 C 0.04 0.23 6.73 -2.47 -0.02 0.21 16 4 C -0.12 -0.81 6.08 -26.05 -0.16 -0.97 16 5 C -0.08 -0.54 0.69 -154.07 -0.11 -0.65 16 6 C -0.11 -0.64 5.86 -25.63 -0.15 -0.79 16 7 C 0.10 0.72 6.47 -2.83 -0.02 0.70 16 8 N -0.63 -6.85 3.34 -171.01 -0.57 -7.42 16 9 C 0.53 7.77 7.84 -10.99 -0.09 7.69 16 10 O -0.52 -10.30 16.32 5.56 0.09 -10.21 16 11 C -0.07 -0.98 5.02 -29.03 -0.15 -1.13 16 12 C -0.17 -3.07 4.38 -104.57 -0.46 -3.53 16 13 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -4.29 9.99 -39.40 -0.39 -4.68 16 15 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 16 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 17 C -0.39 -11.28 9.49 30.88 0.29 -10.98 16 18 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 21 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.23 -5.34 9.17 -39.40 -0.36 -5.70 16 26 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 27 C 0.12 1.17 5.91 -3.25 -0.02 1.15 16 28 C 0.05 0.33 5.55 -2.61 -0.01 0.31 16 29 H 0.03 0.16 8.01 -51.93 -0.42 -0.26 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.29 7.73 -51.93 -0.40 -0.11 16 34 H 0.07 0.58 7.61 -51.93 -0.40 0.19 16 35 H 0.08 0.52 7.80 -51.93 -0.40 0.12 16 36 H 0.09 0.47 7.94 -51.94 -0.41 0.06 16 37 H 0.08 0.43 7.81 -51.93 -0.41 0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 41 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 46 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 47 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 48 H 0.08 0.88 7.61 -51.93 -0.40 0.49 16 49 H 0.05 0.34 7.90 -51.93 -0.41 -0.07 16 50 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -34.86 402.07 -10.20 -45.06 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.99 Total: 1.77 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.19 Total: -16.02 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -1.14 Total: -37.42 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.09 Total: -15.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.86 -10.20 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366445513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.178 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds