Wall clock time and date at job start Wed Apr 1 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48039 * 110.99719 * 2 1 4 4 C 1.54385 * 107.02381 * 214.48544 * 3 2 1 5 5 C 1.52919 * 104.66626 * 2.23368 * 4 3 2 6 6 C 1.53466 * 112.16886 * 258.62341 * 5 4 3 7 7 C 1.54631 * 102.74300 * 272.18619 * 6 5 4 8 8 N 1.47153 * 107.34665 * 339.35496 * 7 6 5 9 9 C 1.34777 * 125.60012 * 179.06180 * 8 7 6 10 10 O 1.21280 * 119.99930 * 180.02562 * 9 8 7 11 11 C 1.50698 * 119.99885 * 0.02562 * 9 8 7 12 12 C 1.50707 * 109.46935 * 179.97438 * 11 9 8 13 13 C 1.38301 * 119.93061 * 269.72654 * 12 11 9 14 14 C 1.38099 * 120.06662 * 179.72677 * 13 12 11 15 15 C 1.38874 * 119.92805 * 0.54772 * 14 13 12 16 16 O 1.35753 * 120.07080 * 179.75044 * 15 14 13 17 17 C 1.34825 * 117.00661 * 174.44500 * 16 15 14 18 18 H 1.08004 * 119.99551 * 5.05637 * 17 16 15 19 19 C 1.38647 * 120.00487 * 185.05600 * 17 16 15 20 20 N 1.31562 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00326 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46862 * 60.00216 * 21 19 17 23 23 H 1.48501 * 109.47439 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47277 * 300.00292 * 21 19 17 25 25 C 1.38876 * 119.86568 * 359.72709 * 15 14 13 26 26 C 1.38098 * 119.93171 * 0.02562 * 25 15 14 27 27 C 1.47757 * 108.79985 * 359.08343 * 8 7 6 28 28 C 1.48848 * 110.99916 * 242.29393 * 2 1 3 29 29 H 1.09000 * 109.47236 * 59.87693 * 1 2 3 30 30 H 1.09000 * 109.46944 * 179.87214 * 1 2 3 31 31 H 1.09000 * 109.47383 * 299.87357 * 1 2 3 32 32 H 1.08994 * 109.92637 * 95.13919 * 3 2 1 33 33 H 1.09001 * 109.92611 * 333.82351 * 3 2 1 34 34 H 1.08994 * 110.40098 * 121.03389 * 4 3 2 35 35 H 1.09003 * 110.39388 * 243.32566 * 4 3 2 36 36 H 1.08988 * 110.76055 * 30.50421 * 6 5 4 37 37 H 1.09001 * 110.75192 * 153.69424 * 6 5 4 38 38 H 1.08998 * 109.86724 * 98.79426 * 7 6 5 39 39 H 1.09004 * 109.87309 * 219.77433 * 7 6 5 40 40 H 1.08991 * 109.47332 * 300.00143 * 11 9 8 41 41 H 1.09005 * 109.47028 * 60.00461 * 11 9 8 42 42 H 1.08000 * 119.96548 * 0.02562 * 13 12 11 43 43 H 1.07999 * 120.03449 * 180.28005 * 14 13 12 44 44 H 0.96997 * 120.00529 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.03577 * 180.02562 * 25 15 14 46 46 H 1.07997 * 119.97195 * 180.02562 * 26 25 15 47 47 H 1.09003 * 110.39501 * 263.53656 * 27 8 7 48 48 H 1.09000 * 110.39413 * 141.13695 * 27 8 7 49 49 H 1.08998 * 110.69520 * 39.59974 * 28 2 1 50 50 H 1.09002 * 110.83903 * 276.46634 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9995 1.3821 0.0000 4 6 3.2974 1.3681 -0.8358 5 6 3.4190 -0.0712 -1.3380 6 6 4.4324 -0.8854 -0.5224 7 6 5.7658 -0.5987 -1.2511 8 7 5.4336 -0.1379 -2.6085 9 6 6.3232 0.2305 -3.5517 10 8 5.9356 0.5956 -4.6413 11 6 7.7996 0.1886 -3.2522 12 6 8.5710 0.6452 -4.4637 13 6 8.9772 -0.2769 -5.4110 14 6 9.6793 0.1392 -6.5250 15 6 9.9872 1.4835 -6.6878 16 8 10.6817 1.8950 -7.7792 17 6 10.8472 3.2241 -7.9343 18 1 10.5070 3.9037 -7.1670 19 6 11.4543 3.7183 -9.0787 20 7 11.8683 2.8904 -10.0136 21 14 11.6830 5.5597 -9.2938 22 1 12.5209 6.0870 -8.1870 23 1 12.3530 5.8271 -10.5918 24 1 10.3575 6.2289 -9.2732 25 6 9.5828 2.4063 -5.7319 26 6 8.8765 1.9847 -4.6226 27 6 3.9647 -0.1448 -2.7677 28 6 2.0024 -0.6461 -1.2303 29 1 -0.3634 0.5157 -0.8889 30 1 -0.3633 -1.0277 -0.0023 31 1 -0.3634 0.5119 0.8911 32 1 2.2183 1.6960 1.0206 33 1 1.2740 2.0584 -0.4521 34 1 3.2159 2.0579 -1.6757 35 1 4.1532 1.6285 -0.2129 36 1 4.4716 -0.5326 0.5080 37 1 4.1911 -1.9478 -0.5564 38 1 6.3181 0.1774 -0.7211 39 1 6.3632 -1.5089 -1.3024 40 1 8.0187 0.8472 -2.4120 41 1 8.0903 -0.8312 -3.0000 42 1 8.7409 -1.3228 -5.2818 43 1 9.9924 -0.5807 -7.2667 44 1 12.2933 3.2361 -10.8141 45 1 9.8204 3.4525 -5.8559 46 1 8.5614 2.7017 -3.8791 47 1 3.6394 -1.0659 -3.2514 48 1 3.6408 0.7224 -3.3431 49 1 1.4070 -0.3688 -2.1001 50 1 2.0343 -1.7297 -1.1166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366445513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:56 Heat of formation + Delta-G solvation = -48.425195 kcal Electronic energy + Delta-G solvation = -29417.742564 eV Core-core repulsion = 25409.533300 eV Total energy + Delta-G solvation = -4008.209265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66896 -40.83413 -39.95942 -38.25741 -37.41740 -34.41052 -33.69381 -32.64044 -31.78775 -30.96776 -30.31353 -28.62542 -27.52780 -26.73845 -25.09633 -23.90514 -23.64530 -22.38084 -22.09770 -20.41265 -20.11037 -19.82567 -18.82374 -18.02246 -17.09614 -16.84109 -16.55134 -16.39162 -16.32759 -16.06674 -15.76218 -15.51291 -15.29209 -15.05439 -15.01042 -14.56884 -14.40874 -14.14555 -14.11303 -13.79625 -13.74186 -13.59173 -13.51054 -12.96854 -12.88283 -12.82221 -12.57407 -12.46677 -12.43339 -12.32888 -12.26437 -12.14984 -12.13208 -11.82922 -11.50331 -11.43143 -11.18991 -10.92767 -10.74245 -9.77438 -9.60601 -9.42123 -8.90967 -8.47546 -6.15945 0.60500 0.65912 1.33005 1.44259 1.49863 1.70018 2.03106 2.17359 2.82711 2.96718 3.15044 3.45189 3.51118 3.53773 3.57588 3.85062 3.97402 4.03446 4.08133 4.18638 4.21151 4.24604 4.33513 4.44144 4.46734 4.51155 4.58066 4.62853 4.65156 4.67880 4.68779 4.75349 4.79681 4.81001 4.92844 4.97251 5.02864 5.04603 5.08283 5.13277 5.15155 5.26797 5.28986 5.30192 5.40031 5.55892 5.70682 5.77027 5.85580 6.02139 6.03611 6.21596 6.55656 6.96607 7.24840 7.77789 8.75606 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.001870 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.347101 B =14966.744012 C =15586.701961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.526 5.526 3 C 0.037 3.963 4 C -0.115 4.115 5 C -0.069 4.069 6 C -0.099 4.099 7 C 0.092 3.908 8 N -0.620 5.620 9 C 0.523 3.477 10 O -0.585 6.585 11 C -0.070 4.070 12 C -0.146 4.146 13 C -0.058 4.058 14 C -0.206 4.206 15 C 0.112 3.888 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.244 4.244 26 C -0.060 4.060 27 C 0.117 3.883 28 C 0.052 3.948 29 H 0.025 0.975 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.113 0.887 44 H 0.273 0.727 45 H 0.118 0.882 46 H 0.137 0.863 47 H 0.068 0.932 48 H 0.052 0.948 49 H 0.043 0.957 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.294 -7.587 27.835 35.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.030 4.030 8 N -0.354 5.354 9 C 0.313 3.687 10 O -0.465 6.465 11 C -0.109 4.109 12 C -0.147 4.147 13 C -0.076 4.076 14 C -0.225 4.225 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.179 1.179 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.263 4.263 26 C -0.078 4.078 27 C -0.006 4.006 28 C -0.076 4.076 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.164 0.836 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.155 0.845 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.087 -7.780 27.316 34.787 hybrid contribution -0.149 1.368 -1.780 2.250 sum -20.236 -6.412 25.536 33.207 Atomic orbital electron populations 1.22566 0.87108 1.02781 1.01002 1.64826 1.08812 1.14936 1.36426 1.22992 0.95403 0.89718 1.00982 1.22235 0.98590 0.95040 0.99410 1.21378 0.95743 0.96439 0.93514 1.22419 0.91078 1.00822 0.99378 1.22462 0.98905 1.01014 0.80601 1.48690 1.06247 1.65832 1.14655 1.20905 0.89065 0.75871 0.82830 1.90750 1.81392 1.48939 1.25370 1.20484 0.87908 1.05907 0.96627 1.19259 1.03745 0.93048 0.98637 1.20868 0.94907 1.00094 0.91702 1.20440 1.07547 0.92762 1.01763 1.19929 0.91382 0.94671 0.87821 1.83934 1.64353 1.26370 1.39341 1.21780 1.41237 0.79890 1.06238 0.88300 1.26620 0.95727 1.06077 0.93725 1.70183 1.39174 1.37549 1.09001 0.84642 0.79367 0.73503 0.78635 1.17870 1.19392 1.18497 1.21226 1.07799 0.99720 0.97559 1.20918 0.95101 0.95916 0.95913 1.21992 0.80328 1.01333 0.96925 1.22988 0.92864 1.00480 0.91299 0.95667 0.90505 0.90627 0.89358 0.93964 0.92622 0.89620 0.88176 0.89223 0.89682 0.89235 0.85676 0.85360 0.83610 0.86910 0.91826 0.86421 0.84522 0.91358 0.92910 0.93897 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.39 127.69 1.20 1.33 16 2 N -0.53 -5.83 5.56 -910.55 -5.06 -10.88 16 3 C 0.04 0.40 6.73 86.55 0.58 0.98 16 4 C -0.11 -1.37 6.08 31.04 0.19 -1.18 16 5 C -0.07 -0.80 0.69 -51.90 -0.04 -0.83 16 6 C -0.10 -0.75 5.86 31.31 0.18 -0.57 16 7 C 0.09 0.87 6.47 86.81 0.56 1.43 16 8 N -0.62 -11.52 3.34 -813.34 -2.72 -14.24 16 9 C 0.52 13.92 7.84 87.66 0.69 14.61 16 10 O -0.58 -22.71 16.32 -3.03 -0.05 -22.76 16 11 C -0.07 -1.52 5.02 29.10 0.15 -1.37 16 12 C -0.15 -4.86 4.38 -19.83 -0.09 -4.94 16 13 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 14 C -0.21 -9.50 9.99 22.39 0.22 -9.28 16 15 C 0.11 6.00 6.65 22.58 0.15 6.15 16 16 O -0.23 -14.82 9.76 -22.73 -0.22 -15.04 16 17 C -0.42 -25.38 9.49 67.92 0.64 -24.73 16 18 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 19 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 20 N -0.92 -58.40 13.67 21.61 0.30 -58.10 16 21 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 22 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 C -0.24 -11.49 9.17 22.39 0.21 -11.28 16 26 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 27 C 0.12 2.09 5.91 86.21 0.51 2.60 16 28 C 0.05 0.56 5.55 86.01 0.48 1.04 16 29 H 0.02 0.25 8.01 -2.39 -0.02 0.23 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 0.48 7.73 -2.39 -0.02 0.47 16 34 H 0.05 0.85 7.61 -2.39 -0.02 0.84 16 35 H 0.09 0.89 7.80 -2.39 -0.02 0.87 16 36 H 0.10 0.58 7.94 -2.39 -0.02 0.57 16 37 H 0.09 0.55 7.81 -2.39 -0.02 0.53 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.13 1.96 8.08 -2.39 -0.02 1.94 16 41 H 0.13 1.94 8.08 -2.38 -0.02 1.92 16 42 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 44 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 46 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 47 H 0.07 1.21 8.06 -2.39 -0.02 1.19 16 48 H 0.05 1.21 7.61 -2.39 -0.02 1.19 16 49 H 0.04 0.53 7.90 -2.39 -0.02 0.51 16 50 H 0.10 0.87 7.79 -2.39 -0.02 0.86 16 Total: -1.00 -83.66 402.07 1.74 -81.93 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.93 Total: 23.53 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 6.53 Total: -30.96 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -7.48 Total: -83.23 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.27 Total: -37.79 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -83.66 1.74 -81.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366445513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.500 kcal (2) G-P(sol) polarization free energy of solvation -83.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds