Wall clock time and date at job start Wed Apr 1 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48678 * 110.99904 * 2 1 4 4 C 1.54702 * 104.63472 * 201.59524 * 3 2 1 5 5 C 1.53027 * 104.57914 * 23.68972 * 4 3 2 6 6 C 1.53897 * 111.33809 * 120.98088 * 5 4 3 7 7 C 1.55350 * 101.36564 * 86.49075 * 6 5 4 8 8 N 1.47542 * 104.86396 * 36.03980 * 7 6 5 9 9 C 1.34774 * 125.67129 * 156.03823 * 8 7 6 10 10 O 1.21280 * 119.99854 * 179.69188 * 9 8 7 11 11 C 1.50700 * 119.99925 * 359.69475 * 9 8 7 12 12 C 1.50698 * 109.47293 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96972 * 89.99434 * 12 11 9 14 14 C 1.38275 * 120.13835 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.06977 * 0.28020 * 14 13 12 16 16 C 1.38853 * 119.93133 * 359.45069 * 15 14 13 17 17 O 1.35749 * 120.07112 * 180.27775 * 16 15 14 18 18 C 1.34833 * 116.99801 * 354.75701 * 17 16 15 19 19 H 1.07999 * 120.00283 * 5.08278 * 18 17 16 20 20 C 1.38658 * 119.99720 * 185.08053 * 18 17 16 21 21 N 1.31553 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99773 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46855 * 90.00122 * 22 20 18 24 24 H 1.48494 * 109.47218 * 210.00112 * 22 20 18 25 25 H 1.48498 * 109.46997 * 330.00116 * 22 20 18 26 26 C 1.38080 * 119.96292 * 270.02113 * 12 11 9 27 27 C 1.47344 * 108.65565 * 335.77478 * 8 7 6 28 28 C 1.48862 * 110.99999 * 244.32746 * 2 1 3 29 29 H 1.08998 * 109.47071 * 60.12789 * 1 2 3 30 30 H 1.09009 * 109.47098 * 180.12803 * 1 2 3 31 31 H 1.08998 * 109.47128 * 300.12142 * 1 2 3 32 32 H 1.08997 * 110.40271 * 82.81004 * 3 2 1 33 33 H 1.08996 * 110.50413 * 320.43477 * 3 2 1 34 34 H 1.08997 * 110.41675 * 264.90969 * 4 3 2 35 35 H 1.08996 * 110.41015 * 142.45703 * 4 3 2 36 36 H 1.09003 * 111.03279 * 204.70998 * 6 5 4 37 37 H 1.09007 * 111.02493 * 328.61585 * 6 5 4 38 38 H 1.09001 * 110.47336 * 277.16343 * 7 6 5 39 39 H 1.09000 * 110.31504 * 154.83677 * 7 6 5 40 40 H 1.09001 * 109.47395 * 59.99674 * 11 9 8 41 41 H 1.08998 * 109.47262 * 299.99770 * 11 9 8 42 42 H 1.08000 * 119.92829 * 0.04897 * 13 12 11 43 43 H 1.08000 * 119.96093 * 180.02562 * 14 13 12 44 44 H 1.07996 * 120.03245 * 179.70156 * 15 14 13 45 45 H 0.96999 * 119.99776 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03759 * 359.97438 * 26 12 11 47 47 H 1.09008 * 109.96740 * 121.52934 * 27 8 7 48 48 H 1.08997 * 109.96909 * 242.75444 * 27 8 7 49 49 H 1.08997 * 110.46342 * 39.27848 * 28 2 1 50 50 H 1.08994 * 110.46991 * 276.68394 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3880 0.0000 4 6 3.4411 1.2542 -0.5509 5 6 3.4223 -0.0399 -1.3675 6 6 3.8034 0.2189 -2.8359 7 6 5.3528 0.1264 -2.7710 8 7 5.6275 -0.9310 -1.7794 9 6 6.7522 -1.6705 -1.7101 10 8 6.8721 -2.5123 -0.8453 11 6 7.8607 -1.4512 -2.7072 12 6 8.9956 -2.3979 -2.4130 13 6 9.0237 -3.6480 -3.0046 14 6 10.0632 -4.5197 -2.7367 15 6 11.0739 -4.1466 -1.8725 16 6 11.0515 -2.8904 -1.2813 17 8 12.0464 -2.5186 -0.4359 18 6 12.9683 -3.4529 -0.1271 19 1 12.9418 -4.4183 -0.6106 20 6 13.9505 -3.1742 0.8110 21 7 13.9826 -1.9984 1.4003 22 14 15.2273 -4.4687 1.2393 23 1 16.3982 -4.3266 0.3371 24 1 15.6626 -4.2878 2.6474 25 1 14.6360 -5.8208 1.0738 26 6 10.0061 -2.0169 -1.5526 27 6 4.4705 -1.0399 -0.8735 28 6 2.0024 -0.6021 -1.2526 29 1 -0.3633 0.5118 -0.8911 30 1 -0.3634 -1.0277 0.0023 31 1 -0.3633 0.5157 0.8889 32 1 2.0186 1.7886 1.0136 33 1 1.4038 2.0265 -0.6503 34 1 4.1561 1.1766 0.2682 35 1 3.6841 2.1032 -1.1897 36 1 3.3892 -0.5494 -3.4888 37 1 3.4857 1.2122 -3.1531 38 1 5.7779 1.0744 -2.4414 39 1 5.7563 -0.1529 -3.7442 40 1 8.2164 -0.4234 -2.6349 41 1 7.4857 -1.6359 -3.7139 42 1 8.2324 -3.9436 -3.6775 43 1 10.0825 -5.4948 -3.2005 44 1 11.8829 -4.8297 -1.6599 45 1 14.6695 -1.8036 2.0569 46 1 9.9837 -1.0408 -1.0909 47 1 4.0652 -2.0512 -0.9072 48 1 4.7706 -0.7931 0.1449 49 1 1.4010 -0.2962 -2.1086 50 1 2.0281 -1.6888 -1.1723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367827564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:07 Heat of formation + Delta-G solvation = -22.558115 kcal Electronic energy + Delta-G solvation = -29533.880159 eV Core-core repulsion = 25526.792575 eV Total energy + Delta-G solvation = -4007.087584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88052 -39.37243 -38.59446 -36.85043 -36.22608 -32.94116 -32.28162 -31.82439 -30.32640 -29.63231 -29.12039 -27.65051 -26.35226 -25.20897 -24.41355 -23.25897 -21.65305 -21.56675 -20.94526 -19.65930 -19.25361 -17.52540 -17.00657 -16.89285 -16.54903 -15.86179 -15.59832 -15.19561 -14.95645 -14.77806 -14.61302 -14.32418 -14.27796 -13.90672 -13.57728 -13.45367 -13.33975 -13.10695 -12.82042 -12.63871 -12.48842 -12.33991 -12.30813 -12.08915 -11.88627 -11.79227 -11.67946 -11.44988 -11.20884 -11.18469 -11.04234 -10.87569 -10.78462 -10.68100 -10.53836 -10.38242 -9.65349 -9.25699 -8.93758 -8.76399 -8.65571 -7.98333 -7.13498 -6.36783 -3.95593 2.16161 2.47242 2.83096 3.00574 3.17825 3.19490 3.24035 3.54644 4.03034 4.03299 4.06011 4.12746 4.47079 4.59708 4.72981 4.80132 4.85159 4.93527 4.97544 4.98645 5.06254 5.14396 5.21522 5.24898 5.25406 5.30438 5.33522 5.42632 5.43928 5.45850 5.54379 5.54782 5.64115 5.73743 5.74771 5.79096 5.82901 5.85120 6.00945 6.21244 6.26977 6.37498 6.42078 6.55150 6.74152 6.99974 7.15160 7.34954 7.44748 7.49733 7.52788 7.91134 8.08477 8.34995 9.09069 9.80460 10.81631 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.001988 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.782587 B =14077.810233 C =14727.272546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.032 3.968 4 C -0.112 4.112 5 C -0.076 4.076 6 C -0.121 4.121 7 C 0.100 3.900 8 N -0.629 5.629 9 C 0.529 3.471 10 O -0.516 6.516 11 C -0.088 4.088 12 C -0.033 4.033 13 C -0.196 4.196 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.154 3.846 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.173 4.173 27 C 0.128 3.872 28 C 0.047 3.953 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.497 7.784 -9.887 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.240 5.240 3 C -0.096 4.096 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.160 4.160 7 C -0.023 4.023 8 N -0.366 5.366 9 C 0.318 3.682 10 O -0.389 6.389 11 C -0.127 4.127 12 C -0.034 4.034 13 C -0.215 4.215 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.200 1.200 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.193 4.193 27 C 0.006 3.994 28 C -0.081 4.081 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.131 0.869 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.989 7.286 -8.611 27.417 hybrid contribution 0.224 -0.197 -0.494 0.577 sum -24.765 7.089 -9.105 27.321 Atomic orbital electron populations 1.22512 0.87880 1.02347 1.00784 1.65440 1.08224 1.15348 1.34995 1.23225 0.95082 0.89956 1.01369 1.22350 0.96907 0.96138 0.99622 1.21462 0.94780 0.95861 0.95632 1.22829 0.95035 1.02794 0.95308 1.22403 0.95523 0.91440 0.92929 1.48698 1.17234 1.38040 1.32657 1.20464 0.81485 0.80298 0.85952 1.90776 1.78922 1.33048 1.36181 1.20564 0.92791 1.00956 0.98436 1.18675 0.93459 0.94232 0.97050 1.20340 1.00392 0.94766 1.06008 1.20673 0.93869 0.98004 0.96783 1.21169 1.02141 0.98166 1.03514 1.19269 0.88421 0.92169 0.90033 1.83975 1.31526 1.38357 1.54537 1.21313 1.06319 0.95414 1.23567 0.89139 1.25274 0.98195 0.97620 0.95512 1.70042 1.33525 1.20765 1.25685 0.85720 0.79878 0.79742 0.78129 1.19953 1.20312 1.19225 1.19940 0.94968 1.00582 1.03778 1.21833 0.84863 0.98718 0.94009 1.23051 0.93295 1.00551 0.91161 0.95407 0.91136 0.91205 0.89926 0.93765 0.90203 0.90627 0.90225 0.89704 0.91152 0.90291 0.88411 0.88571 0.87993 0.87489 0.85621 0.92144 0.86864 0.91306 0.91036 0.93105 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.52 60.06 0.57 0.65 16 2 N -0.52 -4.04 5.66 -238.45 -1.35 -5.39 16 3 C 0.03 0.21 6.53 -1.94 -0.01 0.20 16 4 C -0.11 -0.77 6.23 -25.82 -0.16 -0.94 16 5 C -0.08 -0.57 0.79 -153.92 -0.12 -0.69 16 6 C -0.12 -0.70 5.84 -25.02 -0.15 -0.85 16 7 C 0.10 0.75 6.63 -2.22 -0.01 0.74 16 8 N -0.63 -7.42 3.34 -170.66 -0.57 -7.99 16 9 C 0.53 8.38 7.84 -10.99 -0.09 8.29 16 10 O -0.52 -10.85 16.36 5.56 0.09 -10.75 16 11 C -0.09 -1.24 4.83 -29.04 -0.14 -1.39 16 12 C -0.03 -0.64 4.37 -104.65 -0.46 -1.10 16 13 C -0.20 -3.68 9.70 -39.53 -0.38 -4.07 16 14 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 15 C -0.23 -5.36 9.17 -39.40 -0.36 -5.72 16 16 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 17 O -0.18 -5.38 9.76 0.04 0.00 -5.38 16 18 C -0.39 -11.34 9.49 30.89 0.29 -11.04 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -26.15 13.67 55.48 0.76 -25.39 16 22 Si 0.94 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.17 -3.94 9.65 -39.39 -0.38 -4.32 16 27 C 0.13 1.41 6.11 -3.55 -0.02 1.39 16 28 C 0.05 0.34 5.65 -2.66 -0.02 0.32 16 29 H 0.03 0.15 7.98 -51.93 -0.41 -0.27 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.25 7.97 -51.93 -0.41 -0.16 16 34 H 0.08 0.66 7.32 -51.93 -0.38 0.28 16 35 H 0.08 0.42 7.49 -51.93 -0.39 0.03 16 36 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 37 H 0.08 0.35 7.70 -51.93 -0.40 -0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.49 7.49 -51.93 -0.39 0.10 16 40 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.10 1.06 7.80 -51.93 -0.41 0.66 16 42 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 47 H 0.07 0.82 7.41 -51.92 -0.38 0.43 16 48 H 0.07 0.90 7.38 -51.93 -0.38 0.52 16 49 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 50 H 0.09 0.67 7.40 -51.93 -0.38 0.28 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -35.85 399.82 -10.10 -45.95 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.84 Total: 2.41 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -2.19 Total: -15.71 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -1.16 Total: -38.76 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.85 -10.10 -45.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367827564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.389 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds