Wall clock time and date at job start Wed Apr 1 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48678 * 110.99904 * 2 1 4 4 C 1.54702 * 104.63472 * 201.59524 * 3 2 1 5 5 C 1.53027 * 104.57914 * 23.68972 * 4 3 2 6 6 C 1.53897 * 111.33809 * 120.98088 * 5 4 3 7 7 C 1.55350 * 101.36564 * 86.49075 * 6 5 4 8 8 N 1.47542 * 104.86396 * 36.03980 * 7 6 5 9 9 C 1.34774 * 125.67129 * 156.03823 * 8 7 6 10 10 O 1.21280 * 119.99854 * 179.69188 * 9 8 7 11 11 C 1.50700 * 119.99925 * 359.69475 * 9 8 7 12 12 C 1.50698 * 109.47293 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96972 * 89.99434 * 12 11 9 14 14 C 1.38275 * 120.13835 * 180.02562 * 13 12 11 15 15 C 1.38123 * 120.06977 * 0.28020 * 14 13 12 16 16 C 1.38853 * 119.93133 * 359.45069 * 15 14 13 17 17 O 1.35749 * 120.07112 * 180.27775 * 16 15 14 18 18 C 1.34833 * 116.99801 * 354.75701 * 17 16 15 19 19 H 1.07999 * 120.00283 * 5.08278 * 18 17 16 20 20 C 1.38658 * 119.99720 * 185.08053 * 18 17 16 21 21 N 1.31553 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99773 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46855 * 90.00122 * 22 20 18 24 24 H 1.48494 * 109.47218 * 210.00112 * 22 20 18 25 25 H 1.48498 * 109.46997 * 330.00116 * 22 20 18 26 26 C 1.38080 * 119.96292 * 270.02113 * 12 11 9 27 27 C 1.47344 * 108.65565 * 335.77478 * 8 7 6 28 28 C 1.48862 * 110.99999 * 244.32746 * 2 1 3 29 29 H 1.08998 * 109.47071 * 60.12789 * 1 2 3 30 30 H 1.09009 * 109.47098 * 180.12803 * 1 2 3 31 31 H 1.08998 * 109.47128 * 300.12142 * 1 2 3 32 32 H 1.08997 * 110.40271 * 82.81004 * 3 2 1 33 33 H 1.08996 * 110.50413 * 320.43477 * 3 2 1 34 34 H 1.08997 * 110.41675 * 264.90969 * 4 3 2 35 35 H 1.08996 * 110.41015 * 142.45703 * 4 3 2 36 36 H 1.09003 * 111.03279 * 204.70998 * 6 5 4 37 37 H 1.09007 * 111.02493 * 328.61585 * 6 5 4 38 38 H 1.09001 * 110.47336 * 277.16343 * 7 6 5 39 39 H 1.09000 * 110.31504 * 154.83677 * 7 6 5 40 40 H 1.09001 * 109.47395 * 59.99674 * 11 9 8 41 41 H 1.08998 * 109.47262 * 299.99770 * 11 9 8 42 42 H 1.08000 * 119.92829 * 0.04897 * 13 12 11 43 43 H 1.08000 * 119.96093 * 180.02562 * 14 13 12 44 44 H 1.07996 * 120.03245 * 179.70156 * 15 14 13 45 45 H 0.96999 * 119.99776 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03759 * 359.97438 * 26 12 11 47 47 H 1.09008 * 109.96740 * 121.52934 * 27 8 7 48 48 H 1.08997 * 109.96909 * 242.75444 * 27 8 7 49 49 H 1.08997 * 110.46342 * 39.27848 * 28 2 1 50 50 H 1.08994 * 110.46991 * 276.68394 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3880 0.0000 4 6 3.4411 1.2542 -0.5509 5 6 3.4223 -0.0399 -1.3675 6 6 3.8034 0.2189 -2.8359 7 6 5.3528 0.1264 -2.7710 8 7 5.6275 -0.9310 -1.7794 9 6 6.7522 -1.6705 -1.7101 10 8 6.8721 -2.5123 -0.8453 11 6 7.8607 -1.4512 -2.7072 12 6 8.9956 -2.3979 -2.4130 13 6 9.0237 -3.6480 -3.0046 14 6 10.0632 -4.5197 -2.7367 15 6 11.0739 -4.1466 -1.8725 16 6 11.0515 -2.8904 -1.2813 17 8 12.0464 -2.5186 -0.4359 18 6 12.9683 -3.4529 -0.1271 19 1 12.9418 -4.4183 -0.6106 20 6 13.9505 -3.1742 0.8110 21 7 13.9826 -1.9984 1.4003 22 14 15.2273 -4.4687 1.2393 23 1 16.3982 -4.3266 0.3371 24 1 15.6626 -4.2878 2.6474 25 1 14.6360 -5.8208 1.0738 26 6 10.0061 -2.0169 -1.5526 27 6 4.4705 -1.0399 -0.8735 28 6 2.0024 -0.6021 -1.2526 29 1 -0.3633 0.5118 -0.8911 30 1 -0.3634 -1.0277 0.0023 31 1 -0.3633 0.5157 0.8889 32 1 2.0186 1.7886 1.0136 33 1 1.4038 2.0265 -0.6503 34 1 4.1561 1.1766 0.2682 35 1 3.6841 2.1032 -1.1897 36 1 3.3892 -0.5494 -3.4888 37 1 3.4857 1.2122 -3.1531 38 1 5.7779 1.0744 -2.4414 39 1 5.7563 -0.1529 -3.7442 40 1 8.2164 -0.4234 -2.6349 41 1 7.4857 -1.6359 -3.7139 42 1 8.2324 -3.9436 -3.6775 43 1 10.0825 -5.4948 -3.2005 44 1 11.8829 -4.8297 -1.6599 45 1 14.6695 -1.8036 2.0569 46 1 9.9837 -1.0408 -1.0909 47 1 4.0652 -2.0512 -0.9072 48 1 4.7706 -0.7931 0.1449 49 1 1.4010 -0.2962 -2.1086 50 1 2.0281 -1.6888 -1.1723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367827564.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:06 Heat of formation + Delta-G solvation = -47.534279 kcal Electronic energy + Delta-G solvation = -29534.963206 eV Core-core repulsion = 25526.792575 eV Total energy + Delta-G solvation = -4008.170632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68549 -40.84396 -39.97076 -38.24184 -37.45362 -34.35741 -33.87514 -33.15962 -30.99824 -30.85748 -30.26893 -28.86097 -27.45117 -26.99547 -25.26436 -23.87294 -23.27909 -22.64009 -22.16021 -20.47155 -20.28120 -19.39635 -18.71793 -18.05263 -17.33822 -16.86088 -16.63644 -16.39030 -16.21883 -16.11212 -16.03415 -15.50382 -15.32084 -15.14229 -14.93500 -14.77766 -14.33218 -14.13283 -13.99519 -13.76819 -13.64337 -13.60125 -13.14145 -13.03352 -12.95443 -12.82995 -12.60285 -12.52075 -12.40410 -12.35130 -12.28592 -12.22776 -12.11858 -11.76525 -11.62255 -11.41677 -11.21623 -10.95660 -10.79545 -9.68009 -9.64881 -9.41443 -8.98578 -8.47539 -6.16103 0.50449 0.74788 1.33043 1.43265 1.51440 1.63579 1.99733 2.17425 2.82973 3.04237 3.14423 3.39527 3.44342 3.47167 3.55795 3.77749 3.93874 4.03598 4.09358 4.19774 4.27545 4.30330 4.37116 4.40393 4.44156 4.50037 4.55629 4.58033 4.64958 4.66873 4.69025 4.72736 4.76855 4.83991 4.86512 4.97993 5.01313 5.03513 5.05953 5.08114 5.12323 5.19590 5.28669 5.30344 5.36007 5.64093 5.71855 5.74370 5.86726 6.02242 6.06765 6.22269 6.50597 6.96858 7.18579 7.78463 8.76133 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019216 B = 0.001988 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.782587 B =14077.810233 C =14727.272546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.544 5.544 3 C 0.034 3.966 4 C -0.111 4.111 5 C -0.069 4.069 6 C -0.109 4.109 7 C 0.089 3.911 8 N -0.622 5.622 9 C 0.524 3.476 10 O -0.585 6.585 11 C -0.082 4.082 12 C -0.027 4.027 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.193 4.193 27 C 0.125 3.875 28 C 0.051 3.949 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.119 0.881 45 H 0.272 0.728 46 H 0.104 0.896 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.071 0.929 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.999 7.810 -13.370 31.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.268 5.268 3 C -0.094 4.094 4 C -0.149 4.149 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.032 4.032 8 N -0.356 5.356 9 C 0.314 3.686 10 O -0.464 6.464 11 C -0.121 4.121 12 C -0.027 4.027 13 C -0.198 4.198 14 C -0.091 4.091 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.212 4.212 27 C 0.002 3.998 28 C -0.077 4.077 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.571 7.352 -12.168 31.020 hybrid contribution 0.668 -0.169 0.437 0.816 sum -26.903 7.182 -11.732 30.216 Atomic orbital electron populations 1.22516 0.86898 1.02511 1.01456 1.65408 1.09397 1.16214 1.35755 1.23216 0.94989 0.89678 1.01502 1.22345 0.96652 0.96628 0.99254 1.21406 0.93684 0.94851 0.97041 1.22862 0.93395 1.04815 0.93668 1.22820 0.97238 0.90428 0.92746 1.48730 1.16023 1.37701 1.33133 1.20715 0.82583 0.79898 0.85384 1.90754 1.80442 1.36340 1.38870 1.20655 0.90496 1.00794 1.00199 1.19201 0.93332 0.95484 0.94724 1.20970 1.00326 0.93748 1.04807 1.21140 0.92698 0.99894 0.95387 1.21299 1.03382 0.97229 1.04626 1.19871 0.88981 0.94246 0.90789 1.83935 1.33371 1.39690 1.57135 1.21831 1.06890 0.95988 1.24328 0.88226 1.26643 1.00444 1.00258 0.94947 1.70193 1.35218 1.23435 1.27209 0.84562 0.76653 0.76659 0.78142 1.18383 1.19547 1.17875 1.20208 0.95692 1.00215 1.05104 1.21879 0.85706 0.99207 0.92961 1.23015 0.93188 0.99857 0.91667 0.94177 0.91271 0.91044 0.90513 0.92049 0.92476 0.88401 0.89282 0.86788 0.89976 0.87830 0.86295 0.83854 0.83499 0.83563 0.86358 0.91857 0.87746 0.92800 0.93867 0.91095 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.52 127.69 1.22 1.37 16 2 N -0.54 -7.83 5.66 -908.34 -5.14 -12.97 16 3 C 0.03 0.39 6.53 86.54 0.57 0.96 16 4 C -0.11 -1.33 6.23 31.18 0.19 -1.14 16 5 C -0.07 -0.88 0.79 -51.80 -0.04 -0.92 16 6 C -0.11 -0.78 5.84 31.70 0.19 -0.60 16 7 C 0.09 0.97 6.63 86.99 0.58 1.55 16 8 N -0.62 -13.59 3.34 -812.24 -2.71 -16.30 16 9 C 0.52 15.97 7.84 87.66 0.69 16.65 16 10 O -0.58 -25.12 16.36 -3.03 -0.05 -25.17 16 11 C -0.08 -2.08 4.83 29.10 0.14 -1.94 16 12 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 13 C -0.18 -6.18 9.70 22.30 0.22 -5.96 16 14 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 15 C -0.25 -11.70 9.17 22.39 0.21 -11.49 16 16 C 0.11 6.04 6.65 22.58 0.15 6.19 16 17 O -0.23 -15.07 9.76 -22.76 -0.22 -15.29 16 18 C -0.41 -25.54 9.49 67.92 0.64 -24.90 16 19 H 0.10 5.66 5.20 -2.91 -0.02 5.65 16 20 C -0.03 -1.55 5.49 84.83 0.47 -1.08 16 21 N -0.92 -59.01 13.67 21.61 0.30 -58.72 16 22 Si 1.02 44.94 29.55 68.60 2.03 46.97 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C -0.19 -9.08 9.65 22.39 0.22 -8.86 16 27 C 0.13 2.74 6.11 86.24 0.53 3.27 16 28 C 0.05 0.62 5.65 85.97 0.49 1.11 16 29 H 0.04 0.32 7.98 -2.39 -0.02 0.30 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.51 7.97 -2.39 -0.02 0.49 16 34 H 0.06 0.95 7.32 -2.39 -0.02 0.93 16 35 H 0.10 0.74 7.49 -2.39 -0.02 0.72 16 36 H 0.09 0.54 8.06 -2.39 -0.02 0.52 16 37 H 0.11 0.26 7.70 -2.38 -0.02 0.24 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.69 7.49 -2.39 -0.02 0.68 16 40 H 0.12 2.55 8.09 -2.39 -0.02 2.53 16 41 H 0.14 2.30 7.80 -2.39 -0.02 2.28 16 42 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 43 H 0.15 4.33 8.06 -2.91 -0.02 4.30 16 44 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 45 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 47 H 0.05 1.33 7.41 -2.38 -0.02 1.31 16 48 H 0.04 1.18 7.38 -2.39 -0.02 1.16 16 49 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 50 H 0.07 1.09 7.40 -2.39 -0.02 1.07 16 Total: -1.00 -87.79 399.82 1.70 -86.09 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.93 Total: 24.78 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 6.57 Total: -29.40 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -7.56 Total: -87.98 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.27 Total: -40.46 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -87.79 1.70 -86.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367827564.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.559 kcal (2) G-P(sol) polarization free energy of solvation -87.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds