Wall clock time and date at job start Wed Apr 1 2020 03:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00031 * 2 1 4 4 C 1.53098 * 109.48153 * 173.83344 * 3 2 1 5 5 C 1.52838 * 109.27321 * 58.67734 * 4 3 2 6 6 C 1.54088 * 109.73020 * 182.60350 * 5 4 3 7 7 C 1.55218 * 102.95802 * 218.66017 * 6 5 4 8 8 C 1.54928 * 101.61142 * 35.07466 * 7 6 5 9 9 N 1.46771 * 110.04868 * 64.45940 * 5 4 3 10 10 C 1.34776 * 125.69736 * 298.21246 * 9 5 4 11 11 O 1.21582 * 120.00501 * 3.71519 * 10 9 5 12 12 C 1.47535 * 119.99468 * 183.71461 * 10 9 5 13 13 C 1.39674 * 120.19650 * 344.45791 * 12 10 9 14 14 C 1.37836 * 119.91616 * 180.29888 * 13 12 10 15 15 C 1.38575 * 120.32013 * 359.70122 * 14 13 12 16 16 C 1.38023 * 120.40829 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.06842 * 0.02562 * 16 15 14 18 18 O 1.35518 * 120.15748 * 179.97438 * 17 16 15 19 19 C 1.34811 * 117.00611 * 354.57306 * 18 17 16 20 20 H 1.08003 * 119.99504 * 3.04461 * 19 18 17 21 21 C 1.38695 * 120.00560 * 183.04479 * 19 18 17 22 22 N 1.31515 * 119.99979 * 183.33392 * 21 19 18 23 23 Si 1.86804 * 119.99740 * 3.05981 * 21 19 18 24 24 H 1.48495 * 109.47248 * 85.84583 * 23 21 19 25 25 H 1.48496 * 109.47072 * 205.84715 * 23 21 19 26 26 H 1.48506 * 109.46945 * 325.84429 * 23 21 19 27 27 C 1.52849 * 109.92711 * 303.08939 * 5 4 3 28 28 C 1.46851 * 110.99851 * 235.69438 * 2 1 3 29 29 H 1.09006 * 109.47084 * 64.41902 * 1 2 3 30 30 H 1.09001 * 109.47603 * 184.41670 * 1 2 3 31 31 H 1.08995 * 109.47250 * 304.41780 * 1 2 3 32 32 H 1.09005 * 109.46687 * 53.83402 * 3 2 1 33 33 H 1.08995 * 109.47215 * 293.83954 * 3 2 1 34 34 H 1.08999 * 109.50247 * 298.72872 * 4 3 2 35 35 H 1.09008 * 109.50081 * 178.61509 * 4 3 2 36 36 H 1.08998 * 110.87557 * 100.20149 * 6 5 4 37 37 H 1.08996 * 110.67052 * 337.02296 * 6 5 4 38 38 H 1.08998 * 111.00039 * 276.99397 * 7 6 5 39 39 H 1.09001 * 111.03064 * 153.16802 * 7 6 5 40 40 H 1.09005 * 110.36675 * 204.28055 * 8 7 6 41 41 H 1.08996 * 110.37067 * 81.96195 * 8 7 6 42 42 H 1.07996 * 120.04533 * 0.02562 * 13 12 10 43 43 H 1.07999 * 119.83813 * 179.72757 * 14 13 12 44 44 H 1.08001 * 119.79469 * 180.02562 * 15 14 13 45 45 H 1.07994 * 119.96500 * 180.02562 * 16 15 14 46 46 H 0.96998 * 119.99718 * 179.72212 * 22 21 19 47 47 H 1.09000 * 109.50395 * 176.83476 * 27 5 4 48 48 H 1.09000 * 109.50334 * 296.96000 * 27 5 4 49 49 H 1.09000 * 109.46570 * 306.16435 * 28 2 1 50 50 H 1.08996 * 109.46723 * 66.15253 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5179 1.3333 0.1550 5 6 4.1220 0.5243 -0.9923 6 6 5.6489 0.4245 -0.8110 7 6 6.1813 0.5586 -2.2628 8 6 5.1685 1.5583 -2.8753 9 7 3.8716 1.2001 -2.2709 10 6 2.6592 1.4557 -2.8012 11 8 1.6525 1.1787 -2.1782 12 6 2.5537 2.0717 -4.1376 13 6 3.6663 2.6845 -4.7185 14 6 3.5596 3.2636 -5.9648 15 6 2.3544 3.2359 -6.6482 16 6 1.2480 2.6290 -6.0891 17 6 1.3366 2.0415 -4.8343 18 8 0.2513 1.4456 -4.2834 19 6 -0.9132 1.5546 -4.9538 20 1 -0.9409 2.0560 -5.9099 21 6 -2.0757 1.0230 -4.4156 22 7 -3.1986 1.0714 -5.0987 23 14 -2.0449 0.2315 -2.7238 24 1 -2.2322 1.2761 -1.6851 25 1 -3.1394 -0.7671 -2.6246 26 1 -0.7385 -0.4436 -2.5170 27 6 3.5179 -0.8796 -1.0144 28 6 1.9952 -0.7727 -1.1325 29 1 -0.3633 0.4438 -0.9270 30 1 -0.3634 -1.0246 0.0791 31 1 -0.3633 0.5808 0.8477 32 1 1.5592 1.9274 0.8297 33 1 1.7377 1.8590 -0.9399 34 1 3.7755 0.8657 1.1054 35 1 3.9114 2.3496 0.1304 36 1 5.9273 -0.5396 -0.3854 37 1 6.0165 1.2401 -0.1883 38 1 6.1469 -0.3994 -2.7816 39 1 7.1907 0.9699 -2.2728 40 1 5.1276 1.4413 -3.9582 41 1 5.4394 2.5811 -2.6135 42 1 4.6078 2.7084 -4.1901 43 1 4.4195 3.7409 -6.4109 44 1 2.2805 3.6919 -7.6244 45 1 0.3124 2.6112 -6.6282 46 1 -4.0107 0.6960 -4.7240 47 1 3.9112 -1.4317 -1.8680 48 1 3.7757 -1.4012 -0.0927 49 1 1.5592 -1.7717 -1.1245 50 1 1.7375 -0.2713 -2.0654 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370205323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:17 Heat of formation + Delta-G solvation = 87.302265 kcal Electronic energy + Delta-G solvation = -33543.501506 eV Core-core repulsion = 29541.177826 eV Total energy + Delta-G solvation = -4002.323680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45941 -39.25049 -37.61816 -37.02293 -36.22031 -32.65917 -32.51616 -31.58790 -30.54268 -30.08040 -29.33032 -27.24432 -25.39985 -24.73321 -23.60164 -22.96773 -22.16986 -21.86843 -20.62736 -20.42365 -18.10038 -17.77411 -17.24300 -17.00044 -16.73365 -15.93211 -15.29017 -14.97167 -14.80231 -14.55027 -14.15744 -14.03162 -13.77494 -13.60614 -13.52396 -13.34120 -13.14988 -12.86785 -12.61194 -12.48421 -12.33372 -12.06514 -11.95821 -11.83742 -11.61733 -11.46579 -11.35690 -11.22488 -10.92876 -10.83704 -10.72440 -10.28084 -10.20367 -10.09873 -10.00988 -9.90265 -9.53757 -8.93925 -8.83497 -8.39573 -7.69049 -7.49269 -7.18026 -6.50034 -4.17254 1.49795 2.13622 3.16991 3.24600 3.26360 3.31096 3.49714 4.23987 4.37509 4.44135 4.46454 4.67040 4.69621 4.78949 5.01437 5.03138 5.13663 5.17414 5.21582 5.40199 5.49545 5.55322 5.57476 5.63697 5.66988 5.74831 5.81708 5.85298 5.89239 5.94190 5.96935 6.02022 6.04370 6.09626 6.18829 6.25399 6.32436 6.43638 6.46296 6.48967 6.55954 6.66727 6.82551 6.96346 7.07598 7.11720 7.27326 7.43522 7.62941 7.72655 7.82144 7.85976 7.89836 8.72897 8.82791 9.44064 10.52960 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.006559 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.096027 B = 4267.700849 C = 6579.415777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C -0.011 4.011 4 C -0.108 4.108 5 C 0.167 3.833 6 C -0.123 4.123 7 C -0.135 4.135 8 C 0.086 3.914 9 N -0.606 5.606 10 C 0.546 3.454 11 O -0.460 6.460 12 C -0.216 4.216 13 C -0.073 4.073 14 C -0.220 4.220 15 C -0.052 4.052 16 C -0.227 4.227 17 C 0.200 3.800 18 O -0.172 6.172 19 C -0.394 4.394 20 H 0.108 0.892 21 C 0.068 3.932 22 N -0.869 5.869 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.289 1.289 26 H -0.240 1.240 27 C -0.109 4.109 28 C -0.004 4.004 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.134 0.866 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.144 0.856 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.137 0.863 46 H 0.282 0.718 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.043 0.957 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.171 0.450 5.178 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.247 5.247 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.083 3.917 6 C -0.161 4.161 7 C -0.173 4.173 8 C -0.036 4.036 9 N -0.340 5.340 10 C 0.345 3.655 11 O -0.342 6.342 12 C -0.221 4.221 13 C -0.091 4.091 14 C -0.240 4.240 15 C -0.071 4.071 16 C -0.246 4.246 17 C 0.143 3.857 18 O -0.073 6.073 19 C -0.469 4.469 20 H 0.125 0.875 21 C -0.137 4.137 22 N -0.505 5.505 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.164 1.164 27 C -0.147 4.147 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.161 0.839 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.155 0.845 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.410 -0.116 6.103 18.449 hybrid contribution -0.499 0.054 -0.024 0.503 sum 16.911 -0.063 6.078 17.970 Atomic orbital electron populations 1.22545 0.88899 1.00560 1.01112 1.62196 1.06711 1.13507 1.42324 1.23828 0.93033 0.91909 1.04927 1.21882 0.96747 0.98826 0.97231 1.20851 0.94058 0.92809 0.83992 1.22689 0.93556 1.02779 0.97060 1.22844 0.98491 1.00035 0.95946 1.22894 0.83207 0.98092 0.99438 1.48173 1.05062 1.59479 1.21266 1.17699 0.82038 0.80049 0.85711 1.90178 1.37629 1.48607 1.57836 1.18714 0.93785 1.13569 0.96026 1.21912 0.97333 0.94621 0.95259 1.20597 0.97953 1.08265 0.97138 1.20989 0.92467 0.95344 0.98253 1.21269 1.00513 1.05935 0.96919 1.18969 0.86684 0.89353 0.90683 1.83685 1.15188 1.61899 1.46486 1.20869 0.82336 1.38900 1.04771 0.87510 1.24530 0.93457 0.95977 0.99728 1.69635 0.99840 1.42969 1.38046 0.86397 0.78919 0.79606 0.81851 1.19760 1.21580 1.16353 1.21904 0.96694 0.94956 1.01189 1.23615 0.92924 0.97283 0.99205 0.93566 0.92984 0.92970 0.94025 0.85194 0.91660 0.92226 0.90234 0.90701 0.90579 0.90096 0.88527 0.91246 0.83901 0.87084 0.86962 0.84504 0.90838 0.92125 0.91664 0.93864 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.90 60.06 0.53 0.87 16 2 N -0.52 -9.79 4.85 -242.88 -1.18 -10.97 16 3 C -0.01 -0.20 5.03 -3.80 -0.02 -0.22 16 4 C -0.11 -1.54 4.92 -26.76 -0.13 -1.67 16 5 C 0.17 2.21 0.78 -131.26 -0.10 2.10 16 6 C -0.12 -1.15 6.00 -24.99 -0.15 -1.30 16 7 C -0.14 -1.12 7.09 -24.54 -0.17 -1.29 16 8 C 0.09 0.90 5.03 -2.48 -0.01 0.89 16 9 N -0.61 -8.69 2.82 -157.44 -0.44 -9.13 16 10 C 0.55 10.12 6.37 -12.47 -0.08 10.04 16 11 O -0.46 -9.77 5.44 -15.94 -0.09 -9.86 16 12 C -0.22 -4.12 5.86 -104.81 -0.61 -4.74 16 13 C -0.07 -1.12 8.20 -39.19 -0.32 -1.44 16 14 C -0.22 -3.28 10.03 -39.60 -0.40 -3.67 16 15 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 16 C -0.23 -4.64 9.15 -39.44 -0.36 -5.00 16 17 C 0.20 4.48 6.64 -38.60 -0.26 4.22 16 18 O -0.17 -4.44 6.80 -20.42 -0.14 -4.58 16 19 C -0.39 -10.87 9.95 30.90 0.31 -10.56 16 20 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 21 C 0.07 1.92 5.49 -17.52 -0.10 1.82 16 22 N -0.87 -24.91 13.96 55.48 0.77 -24.14 16 23 Si 0.91 22.54 25.49 -169.99 -4.33 18.21 16 24 H -0.27 -6.78 7.07 56.52 0.40 -6.38 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.24 -6.01 6.24 56.52 0.35 -5.65 16 27 C -0.11 -1.60 4.89 -26.76 -0.13 -1.73 16 28 C 0.00 -0.08 5.03 -3.80 -0.02 -0.09 16 29 H 0.05 1.04 3.01 -51.93 -0.16 0.88 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.13 2.71 3.55 16.36 0.06 2.76 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 37 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.01 5.38 -51.93 -0.28 0.73 16 41 H 0.07 0.63 7.68 -51.93 -0.40 0.24 16 42 H 0.14 1.69 3.53 -52.49 -0.19 1.50 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 45 H 0.14 2.93 5.64 -52.49 -0.30 2.64 16 46 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 49 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 50 H 0.13 2.74 3.60 16.90 0.06 2.80 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -30.02 358.31 -8.97 -39.00 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.54 Total: 9.10 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.42 Total: -13.03 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.85 Total: -44.24 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.23 Total: -14.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.33 Total: 18.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.02 -8.97 -39.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370205323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.297 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds