Wall clock time and date at job start Wed Apr 1 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00031 * 2 1 4 4 C 1.53098 * 109.48153 * 173.83344 * 3 2 1 5 5 C 1.52838 * 109.27321 * 58.67734 * 4 3 2 6 6 C 1.54088 * 109.73020 * 182.60350 * 5 4 3 7 7 C 1.55218 * 102.95802 * 218.66017 * 6 5 4 8 8 C 1.54928 * 101.61142 * 35.07466 * 7 6 5 9 9 N 1.46771 * 110.04868 * 64.45940 * 5 4 3 10 10 C 1.34776 * 125.69736 * 298.21246 * 9 5 4 11 11 O 1.21582 * 120.00501 * 3.71519 * 10 9 5 12 12 C 1.47535 * 119.99468 * 183.71461 * 10 9 5 13 13 C 1.39674 * 120.19650 * 344.45791 * 12 10 9 14 14 C 1.37836 * 119.91616 * 180.29888 * 13 12 10 15 15 C 1.38575 * 120.32013 * 359.70122 * 14 13 12 16 16 C 1.38023 * 120.40829 * 0.02562 * 15 14 13 17 17 C 1.38838 * 120.06842 * 0.02562 * 16 15 14 18 18 O 1.35518 * 120.15748 * 179.97438 * 17 16 15 19 19 C 1.34811 * 117.00611 * 354.57306 * 18 17 16 20 20 H 1.08003 * 119.99504 * 3.04461 * 19 18 17 21 21 C 1.38695 * 120.00560 * 183.04479 * 19 18 17 22 22 N 1.31515 * 119.99979 * 183.33392 * 21 19 18 23 23 Si 1.86804 * 119.99740 * 3.05981 * 21 19 18 24 24 H 1.48495 * 109.47248 * 85.84583 * 23 21 19 25 25 H 1.48496 * 109.47072 * 205.84715 * 23 21 19 26 26 H 1.48506 * 109.46945 * 325.84429 * 23 21 19 27 27 C 1.52849 * 109.92711 * 303.08939 * 5 4 3 28 28 C 1.46851 * 110.99851 * 235.69438 * 2 1 3 29 29 H 1.09006 * 109.47084 * 64.41902 * 1 2 3 30 30 H 1.09001 * 109.47603 * 184.41670 * 1 2 3 31 31 H 1.08995 * 109.47250 * 304.41780 * 1 2 3 32 32 H 1.09005 * 109.46687 * 53.83402 * 3 2 1 33 33 H 1.08995 * 109.47215 * 293.83954 * 3 2 1 34 34 H 1.08999 * 109.50247 * 298.72872 * 4 3 2 35 35 H 1.09008 * 109.50081 * 178.61509 * 4 3 2 36 36 H 1.08998 * 110.87557 * 100.20149 * 6 5 4 37 37 H 1.08996 * 110.67052 * 337.02296 * 6 5 4 38 38 H 1.08998 * 111.00039 * 276.99397 * 7 6 5 39 39 H 1.09001 * 111.03064 * 153.16802 * 7 6 5 40 40 H 1.09005 * 110.36675 * 204.28055 * 8 7 6 41 41 H 1.08996 * 110.37067 * 81.96195 * 8 7 6 42 42 H 1.07996 * 120.04533 * 0.02562 * 13 12 10 43 43 H 1.07999 * 119.83813 * 179.72757 * 14 13 12 44 44 H 1.08001 * 119.79469 * 180.02562 * 15 14 13 45 45 H 1.07994 * 119.96500 * 180.02562 * 16 15 14 46 46 H 0.96998 * 119.99718 * 179.72212 * 22 21 19 47 47 H 1.09000 * 109.50395 * 176.83476 * 27 5 4 48 48 H 1.09000 * 109.50334 * 296.96000 * 27 5 4 49 49 H 1.09000 * 109.46570 * 306.16435 * 28 2 1 50 50 H 1.08996 * 109.46723 * 66.15253 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5179 1.3333 0.1550 5 6 4.1220 0.5243 -0.9923 6 6 5.6489 0.4245 -0.8110 7 6 6.1813 0.5586 -2.2628 8 6 5.1685 1.5583 -2.8753 9 7 3.8716 1.2001 -2.2709 10 6 2.6592 1.4557 -2.8012 11 8 1.6525 1.1787 -2.1782 12 6 2.5537 2.0717 -4.1376 13 6 3.6663 2.6845 -4.7185 14 6 3.5596 3.2636 -5.9648 15 6 2.3544 3.2359 -6.6482 16 6 1.2480 2.6290 -6.0891 17 6 1.3366 2.0415 -4.8343 18 8 0.2513 1.4456 -4.2834 19 6 -0.9132 1.5546 -4.9538 20 1 -0.9409 2.0560 -5.9099 21 6 -2.0757 1.0230 -4.4156 22 7 -3.1986 1.0714 -5.0987 23 14 -2.0449 0.2315 -2.7238 24 1 -2.2322 1.2761 -1.6851 25 1 -3.1394 -0.7671 -2.6246 26 1 -0.7385 -0.4436 -2.5170 27 6 3.5179 -0.8796 -1.0144 28 6 1.9952 -0.7727 -1.1325 29 1 -0.3633 0.4438 -0.9270 30 1 -0.3634 -1.0246 0.0791 31 1 -0.3633 0.5808 0.8477 32 1 1.5592 1.9274 0.8297 33 1 1.7377 1.8590 -0.9399 34 1 3.7755 0.8657 1.1054 35 1 3.9114 2.3496 0.1304 36 1 5.9273 -0.5396 -0.3854 37 1 6.0165 1.2401 -0.1883 38 1 6.1469 -0.3994 -2.7816 39 1 7.1907 0.9699 -2.2728 40 1 5.1276 1.4413 -3.9582 41 1 5.4394 2.5811 -2.6135 42 1 4.6078 2.7084 -4.1901 43 1 4.4195 3.7409 -6.4109 44 1 2.2805 3.6919 -7.6244 45 1 0.3124 2.6112 -6.6282 46 1 -4.0107 0.6960 -4.7240 47 1 3.9112 -1.4317 -1.8680 48 1 3.7757 -1.4012 -0.0927 49 1 1.5592 -1.7717 -1.1245 50 1 1.7375 -0.2713 -2.0654 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370205323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:16 Heat of formation + Delta-G solvation = 67.064884 kcal Electronic energy + Delta-G solvation = -33544.379065 eV Core-core repulsion = 29541.177826 eV Total energy + Delta-G solvation = -4003.201239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.69592 -40.81820 -38.77903 -38.55072 -37.64263 -34.54356 -33.91363 -32.59677 -31.83503 -31.39271 -30.84853 -28.43903 -27.32613 -25.95198 -24.91440 -24.24388 -23.35570 -23.25211 -21.90572 -21.66253 -19.92200 -19.18325 -18.54297 -18.44912 -18.07722 -17.36600 -16.48503 -16.44836 -16.27082 -16.01086 -15.72117 -15.69301 -15.19616 -14.94215 -14.79567 -14.50653 -14.40376 -14.22721 -14.16232 -13.81450 -13.64135 -13.39113 -13.33799 -13.16106 -12.92491 -12.81228 -12.64402 -12.53937 -12.48505 -12.19782 -11.96960 -11.86720 -11.62806 -11.38192 -11.20992 -11.18628 -10.99936 -10.98257 -10.27334 -9.77618 -9.10168 -8.93447 -8.72252 -8.55169 -6.27779 0.07824 0.65654 1.19961 1.26429 1.48238 1.85902 2.08236 2.21110 2.73292 3.01464 3.13035 3.22853 3.55905 3.68075 3.83840 3.89077 4.05697 4.06861 4.21511 4.25076 4.28821 4.39920 4.50978 4.53473 4.55783 4.59048 4.63773 4.66719 4.71492 4.75419 4.80446 4.82654 4.88476 5.01903 5.03429 5.05497 5.08845 5.12264 5.21321 5.26688 5.30062 5.43926 5.47111 5.53965 5.62354 5.69049 5.75768 5.80792 5.84854 6.17466 6.23342 6.37320 6.64053 6.77128 7.40622 7.56832 8.50233 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.006559 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.096027 B = 4267.700849 C = 6579.415777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.517 5.517 3 C -0.016 4.016 4 C -0.101 4.101 5 C 0.163 3.837 6 C -0.113 4.113 7 C -0.123 4.123 8 C 0.071 3.929 9 N -0.600 5.600 10 C 0.532 3.468 11 O -0.491 6.491 12 C -0.217 4.217 13 C -0.066 4.066 14 C -0.190 4.190 15 C -0.049 4.049 16 C -0.253 4.253 17 C 0.161 3.839 18 O -0.210 6.210 19 C -0.394 4.394 20 H 0.088 0.912 21 C 0.020 3.980 22 N -0.915 5.915 23 Si 0.964 3.036 24 H -0.280 1.280 25 H -0.281 1.281 26 H -0.251 1.251 27 C -0.102 4.102 28 C -0.008 4.008 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.190 0.810 43 H 0.165 0.835 44 H 0.145 0.855 45 H 0.110 0.890 46 H 0.283 0.717 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.025 0.975 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.765 1.508 5.937 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.241 5.241 3 C -0.142 4.142 4 C -0.139 4.139 5 C 0.078 3.922 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.049 4.049 9 N -0.332 5.332 10 C 0.329 3.671 11 O -0.375 6.375 12 C -0.221 4.221 13 C -0.083 4.083 14 C -0.208 4.208 15 C -0.067 4.067 16 C -0.273 4.273 17 C 0.108 3.892 18 O -0.114 6.114 19 C -0.470 4.470 20 H 0.105 0.895 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.790 3.210 24 H -0.207 1.207 25 H -0.207 1.207 26 H -0.176 1.176 27 C -0.141 4.141 28 C -0.134 4.134 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.207 0.793 43 H 0.182 0.818 44 H 0.163 0.837 45 H 0.128 0.872 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.044 0.956 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 24.102 0.959 6.851 25.075 hybrid contribution -2.117 -0.103 -0.346 2.148 sum 21.985 0.856 6.505 22.943 Atomic orbital electron populations 1.22535 0.90228 1.00616 0.99942 1.62306 1.05680 1.14172 1.41939 1.23808 0.96035 0.90991 1.03336 1.21847 0.93624 1.00104 0.98333 1.21032 0.97010 0.91106 0.83004 1.22680 0.89596 1.04420 0.98395 1.22843 0.99345 0.99429 0.94430 1.23258 0.81627 1.00378 0.99678 1.48193 1.05103 1.58254 1.21676 1.17785 0.83135 0.80483 0.85658 1.90243 1.39278 1.49488 1.58486 1.19197 0.93530 1.12895 0.96496 1.22552 0.97632 0.92540 0.95572 1.21278 0.98380 1.05031 0.96093 1.21416 0.91791 0.93917 0.99598 1.21304 1.01324 1.07807 0.96823 1.19678 0.87143 0.90337 0.91994 1.83680 1.15227 1.65257 1.47235 1.20783 0.83730 1.38310 1.04170 0.89489 1.25077 0.93487 0.97187 1.02148 1.69694 1.00343 1.46087 1.39431 0.85570 0.78129 0.78612 0.78734 1.20659 1.20731 1.17585 1.21871 0.93477 0.96702 1.02008 1.23572 0.96009 0.95823 0.98025 0.96580 0.92652 0.91927 0.94690 0.87571 0.90465 0.90762 0.88902 0.88744 0.90850 0.86542 0.88243 0.88588 0.79315 0.81794 0.83701 0.87180 0.90739 0.91637 0.90378 0.95598 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 8.90 127.69 1.14 1.78 16 2 N -0.52 -19.68 4.85 -922.34 -4.47 -24.15 16 3 C -0.02 -0.55 5.03 86.35 0.43 -0.12 16 4 C -0.10 -2.57 4.92 30.57 0.15 -2.42 16 5 C 0.16 3.72 0.78 3.82 0.00 3.72 16 6 C -0.11 -1.44 6.00 31.72 0.19 -1.25 16 7 C -0.12 -1.21 7.09 32.01 0.23 -0.99 16 8 C 0.07 1.06 5.03 86.85 0.44 1.50 16 9 N -0.60 -15.32 2.82 -770.27 -2.17 -17.49 16 10 C 0.53 19.45 6.37 86.70 0.55 20.01 16 11 O -0.49 -21.68 5.44 16.33 0.09 -21.59 16 12 C -0.22 -8.07 5.86 -19.98 -0.12 -8.19 16 13 C -0.07 -1.70 8.20 22.52 0.18 -1.51 16 14 C -0.19 -4.57 10.03 22.25 0.22 -4.34 16 15 C -0.05 -1.49 10.03 22.30 0.22 -1.27 16 16 C -0.25 -10.69 9.15 22.36 0.20 -10.48 16 17 C 0.16 7.52 6.64 22.91 0.15 7.67 16 18 O -0.21 -11.69 6.80 0.30 0.00 -11.69 16 19 C -0.39 -23.74 9.95 67.93 0.68 -23.06 16 20 H 0.09 5.39 5.44 -2.91 -0.02 5.37 16 21 C 0.02 1.24 5.49 84.85 0.47 1.71 16 22 N -0.92 -56.60 13.96 21.62 0.30 -56.30 16 23 Si 0.96 51.15 25.49 68.60 1.75 52.90 16 24 H -0.28 -14.89 7.07 99.48 0.70 -14.19 16 25 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.25 -13.62 6.24 99.48 0.62 -13.00 16 27 C -0.10 -2.81 4.89 30.58 0.15 -2.66 16 28 C -0.01 -0.29 5.03 86.34 0.43 0.14 16 29 H 0.02 0.76 3.01 -2.38 -0.01 0.75 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 32 H 0.03 1.24 8.08 -2.38 -0.02 1.22 16 33 H 0.11 4.57 3.55 0.35 0.00 4.57 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.09 1.03 7.79 -2.39 -0.02 1.01 16 37 H 0.09 0.93 7.83 -2.39 -0.02 0.91 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.10 1.44 5.38 -2.38 -0.01 1.43 16 41 H 0.10 1.02 7.68 -2.39 -0.02 1.00 16 42 H 0.19 3.16 3.53 -2.91 -0.01 3.15 16 43 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 45 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 46 H 0.28 16.27 8.31 -92.71 -0.77 15.50 16 47 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 49 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 50 H 0.10 4.50 3.60 8.93 0.03 4.53 16 Total: -1.00 -76.63 358.31 2.16 -74.47 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.93 Total: 23.62 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.73 Total: -19.77 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -6.34 Total: -97.94 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: 0.09 Total: -33.28 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.75 Total: 52.90 kcal Total: -76.63 2.16 -74.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370205323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.537 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds