Wall clock time and date at job start Wed Apr 1 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46843 * 110.99948 * 2 1 4 4 C 1.53041 * 109.52227 * 185.83528 * 3 2 1 5 5 C 1.53116 * 109.28107 * 300.82956 * 4 3 2 6 6 C 1.53001 * 109.52303 * 177.55992 * 5 4 3 7 7 H 1.08998 * 110.63727 * 296.97993 * 6 5 4 8 8 C 1.55448 * 110.70895 * 173.67076 * 6 5 4 9 9 C 1.54905 * 101.45165 * 206.14261 * 8 6 5 10 10 N 1.47419 * 104.92834 * 37.00468 * 9 8 6 11 11 S 1.65603 * 125.65136 * 155.80118 * 10 9 8 12 12 O 1.42099 * 104.27897 * 206.09722 * 11 10 9 13 13 O 1.42105 * 104.27337 * 333.94469 * 11 10 9 14 14 C 1.81396 * 104.45318 * 90.01602 * 11 10 9 15 15 C 1.53000 * 109.47199 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.47119 * 180.02562 * 15 14 11 17 17 C 1.50701 * 109.46887 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00218 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99924 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99764 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00137 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47347 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47268 * 119.99592 * 21 19 17 24 24 H 1.48503 * 109.47078 * 239.99660 * 21 19 17 25 25 C 1.47026 * 108.70576 * 335.81449 * 10 9 8 26 26 C 1.53118 * 109.21711 * 57.61453 * 5 4 3 27 27 C 1.46847 * 110.99887 * 124.21220 * 2 1 3 28 28 H 1.08998 * 109.47031 * 59.99725 * 1 2 3 29 29 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47334 * 300.00173 * 1 2 3 31 31 H 1.09005 * 109.46371 * 65.82657 * 3 2 1 32 32 H 1.09000 * 109.46673 * 305.85184 * 3 2 1 33 33 H 1.08993 * 109.50440 * 180.87891 * 4 3 2 34 34 H 1.09005 * 109.52992 * 60.78515 * 4 3 2 35 35 H 1.09007 * 109.51881 * 297.68189 * 5 4 3 36 36 H 1.09002 * 111.11560 * 88.08576 * 8 6 5 37 37 H 1.09004 * 111.00873 * 324.14985 * 8 6 5 38 38 H 1.09002 * 110.36692 * 278.10842 * 9 8 6 39 39 H 1.08995 * 110.36664 * 155.89643 * 9 8 6 40 40 H 1.08991 * 109.47188 * 300.00724 * 14 11 10 41 41 H 1.09003 * 109.46894 * 60.00526 * 14 11 10 42 42 H 1.09003 * 109.47056 * 300.00306 * 15 14 11 43 43 H 1.08994 * 109.46960 * 60.00207 * 15 14 11 44 44 H 1.08996 * 109.46764 * 299.99817 * 16 15 14 45 45 H 1.09003 * 109.47227 * 60.00121 * 16 15 14 46 46 H 0.97004 * 119.99757 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.88266 * 120.47537 * 25 10 9 48 48 H 1.08997 * 109.88244 * 241.48894 * 25 10 9 49 49 H 1.09000 * 109.49590 * 62.32230 * 26 5 4 50 50 H 1.08996 * 109.50402 * 182.43612 * 26 5 4 51 51 H 1.09002 * 109.46161 * 294.17909 * 27 2 1 52 52 H 1.09001 * 109.45774 * 54.14094 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1466 5 6 4.1188 0.5368 1.0144 6 6 5.6361 0.4448 0.8405 7 1 5.8862 -0.1007 -0.0694 8 6 6.2924 -0.2205 2.0828 9 6 7.7188 0.3819 2.0366 10 7 7.5300 1.7705 1.5793 11 16 8.5652 3.0307 1.8671 12 8 7.7369 4.1840 1.8132 13 8 9.2363 2.6661 3.0655 14 6 9.7122 3.0044 0.4620 15 6 10.7311 4.1355 0.6142 16 6 11.6981 4.1137 -0.5713 17 6 12.7014 5.2283 -0.4217 18 1 12.6542 5.8861 0.4336 19 6 13.6794 5.4082 -1.3767 20 7 13.7371 4.6068 -2.4180 21 14 14.9234 6.7892 -1.1910 22 1 14.6442 7.5423 0.0581 23 1 16.2925 6.2173 -1.1291 24 1 14.8222 7.7064 -2.3545 25 6 6.2703 1.8516 0.8255 26 6 3.5182 -0.8717 1.0224 27 6 1.9953 -0.7708 1.1337 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7325 1.8608 0.9376 32 1 1.5635 1.9257 -0.8330 33 1 3.9099 2.3511 -0.1309 34 1 3.7820 0.8571 -1.0906 35 1 3.8896 1.0359 1.9560 36 1 6.3226 -1.3050 1.9775 37 1 5.7761 0.0674 2.9987 38 1 8.3405 -0.1689 1.3307 39 1 8.1690 0.3673 3.0292 40 1 10.2332 2.0474 0.4362 41 1 9.1545 3.1395 -0.4648 42 1 10.2102 5.0927 0.6402 43 1 11.2887 4.0000 1.5408 44 1 12.2190 3.1566 -0.5976 45 1 11.1402 4.2495 -1.4978 46 1 14.4250 4.7336 -3.0901 47 1 5.5988 2.5660 1.3016 48 1 6.4715 2.1591 -0.2007 49 1 3.7815 -1.3847 0.0974 50 1 3.9101 -1.4295 1.8729 51 1 1.7324 -0.2709 2.0660 52 1 1.5633 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372887175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:47 Heat of formation + Delta-G solvation = -92.928343 kcal Electronic energy + Delta-G solvation = -28619.019311 eV Core-core repulsion = 24744.324197 eV Total energy + Delta-G solvation = -3874.695115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.03321 -38.21159 -36.89757 -35.73632 -34.66471 -34.46451 -32.18041 -31.37156 -30.57705 -29.20580 -27.79562 -26.41505 -23.92137 -23.63626 -23.22993 -22.12689 -20.66209 -20.50857 -20.06737 -18.80086 -17.58518 -16.83572 -16.51412 -15.97229 -15.78844 -15.47350 -15.29933 -14.95597 -14.64789 -14.46742 -14.33719 -14.05374 -13.80798 -13.68356 -13.23407 -12.90499 -12.78082 -12.60207 -12.51058 -12.26273 -12.19674 -12.02224 -11.94935 -11.85026 -11.76678 -11.58946 -11.55179 -11.45711 -11.22477 -11.13574 -10.93659 -10.83580 -10.80085 -10.48436 -10.43709 -10.40486 -9.95427 -9.49819 -9.20341 -8.88101 -8.73362 -8.41204 -6.05874 -4.08843 0.42875 2.77849 3.29314 3.36776 3.41853 3.53875 4.01207 4.02480 4.22744 4.32460 4.41489 4.42566 4.51496 4.65330 4.81896 4.87534 4.98739 5.04564 5.05216 5.13035 5.13963 5.15034 5.17196 5.22269 5.30456 5.32051 5.38427 5.39880 5.45715 5.47365 5.49964 5.56616 5.63333 5.70698 5.75299 5.78826 5.85439 5.89968 5.95284 6.05663 6.13288 6.23948 6.37623 6.45388 6.66052 6.68820 6.87385 7.57154 7.66871 7.92335 8.32795 8.97629 9.55870 11.05370 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.001999 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.095376 B =14005.377912 C =14535.351955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.091 4.091 7 H 0.088 0.912 8 C -0.123 4.123 9 C 0.114 3.886 10 N -1.017 6.017 11 S 2.614 3.386 12 O -0.958 6.958 13 O -0.959 6.959 14 C -0.608 4.608 15 C -0.106 4.106 16 C 0.030 3.970 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.124 3.876 26 C -0.110 4.110 27 C 0.055 3.945 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.031 0.969 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.763 -14.493 6.107 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.098 4.098 6 C -0.110 4.110 7 H 0.106 0.894 8 C -0.162 4.162 9 C -0.012 4.012 10 N -0.855 5.855 11 S 2.712 3.288 12 O -0.949 6.949 13 O -0.949 6.949 14 C -0.740 4.740 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.002 4.002 26 C -0.148 4.148 27 C -0.073 4.073 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.050 0.950 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.515 -14.103 6.309 29.828 hybrid contribution 0.651 0.807 0.007 1.037 sum -24.865 -13.295 6.316 28.895 Atomic orbital electron populations 1.22348 0.87383 1.01991 1.00643 1.61934 1.07460 1.14049 1.43428 1.22108 0.95822 0.88836 1.00521 1.21718 0.93928 1.00683 0.99162 1.21232 0.93238 0.96328 0.99027 1.22335 0.94133 0.95392 0.99184 0.89398 1.22877 0.94935 1.00107 0.98257 1.22024 0.97732 0.81070 1.00338 1.58780 1.34334 1.23112 1.69243 1.04995 0.74534 0.72403 0.76859 1.93555 1.65924 1.47730 1.87683 1.93554 1.75822 1.82753 1.42797 1.30589 1.14633 1.09602 1.19182 1.21504 0.96027 0.93612 1.03398 1.19067 0.92770 0.97594 0.91358 1.21298 1.12958 1.14446 1.07682 0.92302 1.25030 0.97778 0.96431 0.95211 1.69974 1.34365 1.37912 1.11165 0.86492 0.81099 0.82021 0.78163 1.19601 1.20935 1.20943 1.21771 0.84844 0.97813 0.95753 1.21630 0.93815 0.96652 1.02694 1.22102 0.95837 0.98053 0.91315 0.91332 0.91442 0.95796 0.94923 0.90680 0.90890 0.90701 0.91087 0.89968 0.90619 0.91511 0.89865 0.85502 0.85527 0.91608 0.91601 0.96118 0.96120 0.92957 0.91041 0.91588 0.90865 0.91239 0.95039 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.59 60.07 0.58 0.72 16 2 N -0.54 -3.93 4.91 -242.96 -1.19 -5.12 16 3 C 0.05 0.39 5.46 -3.83 -0.02 0.37 16 4 C -0.12 -0.82 5.10 -26.65 -0.14 -0.96 16 5 C -0.08 -0.54 1.64 -90.50 -0.15 -0.68 16 6 C -0.09 -0.66 2.50 -88.63 -0.22 -0.89 16 7 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 8 C -0.12 -0.88 5.77 -24.43 -0.14 -1.02 16 9 C 0.11 1.08 7.06 -2.53 -0.02 1.06 16 10 N -1.02 -11.98 3.62 -111.43 -0.40 -12.38 16 11 S 2.61 40.22 5.65 -107.50 -0.61 39.61 16 12 O -0.96 -17.31 17.60 -57.54 -1.01 -18.32 16 13 O -0.96 -17.26 17.28 -57.54 -0.99 -18.25 16 14 C -0.61 -9.67 6.18 37.16 0.23 -9.44 16 15 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.12 1.22 5.54 -3.06 -0.02 1.20 16 26 C -0.11 -0.66 5.19 -26.65 -0.14 -0.80 16 27 C 0.05 0.35 5.46 -3.83 -0.02 0.33 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.07 0.52 7.15 -51.93 -0.37 0.15 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.11 -51.92 -0.42 0.11 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.55 8.03 -51.93 -0.42 0.14 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.84 7.66 -51.93 -0.40 0.44 16 40 H 0.13 1.82 8.14 -51.93 -0.42 1.39 16 41 H 0.13 1.82 8.14 -51.92 -0.42 1.39 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.07 0.74 7.47 -51.93 -0.39 0.35 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.36 7.59 -51.93 -0.39 -0.04 16 51 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 52 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 LS Contribution 414.03 15.07 6.24 6.24 Total: -1.00 -34.76 414.03 -12.96 -47.71 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -9.96 Total: -4.69 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -0.74 Total: -25.50 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.86 Total: -43.48 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -2.01 Total: -36.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 40.22 SS G_CDS: -0.61 Total: 39.61 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.76 -12.96 -47.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372887175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.215 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds