Wall clock time and date at job start Wed Apr 1 2020 03:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00035 * 2 1 4 4 N 1.46897 * 109.47093 * 124.99256 * 3 2 1 5 5 C 1.46894 * 111.00318 * 287.81828 * 4 3 2 6 6 C 1.50695 * 109.47293 * 158.91305 * 5 4 3 7 7 H 1.08005 * 119.99764 * 4.55077 * 6 5 4 8 8 C 1.37881 * 120.00201 * 184.55443 * 6 5 4 9 9 N 1.31506 * 119.99626 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47380 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47242 * 119.99770 * 10 8 6 13 13 H 1.48506 * 109.46912 * 239.99923 * 10 8 6 14 14 C 1.46904 * 110.99678 * 163.86861 * 4 3 2 15 15 C 1.50705 * 109.47255 * 293.95508 * 14 4 3 16 16 O 1.21286 * 119.99511 * 359.97438 * 15 14 4 17 17 N 1.34771 * 120.00209 * 180.02562 * 15 14 4 18 18 C 1.46503 * 120.00105 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.46885 * 325.00009 * 18 17 15 20 20 C 1.52998 * 109.47200 * 205.00046 * 18 17 15 21 21 C 1.50701 * 109.47240 * 64.99930 * 20 18 17 22 22 C 1.38230 * 120.00133 * 89.99884 * 21 20 18 23 23 C 1.38238 * 120.00374 * 180.02562 * 22 21 20 24 24 C 1.38234 * 119.99440 * 359.95755 * 23 22 21 25 25 C 1.38234 * 120.00142 * 0.27539 * 24 23 22 26 26 C 1.38236 * 120.00214 * 359.51602 * 25 24 23 27 27 C 1.50695 * 109.46898 * 84.99782 * 18 17 15 28 28 C 1.50700 * 119.99830 * 199.99906 * 27 18 17 29 29 O 1.20757 * 120.00633 * 20.00513 * 27 18 17 30 30 H 1.07998 * 119.99908 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00051 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.99908 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.46935 * 4.99003 * 3 2 1 34 34 H 1.09003 * 109.46787 * 244.99353 * 3 2 1 35 35 H 1.08999 * 109.47330 * 278.91710 * 5 4 3 36 36 H 1.09000 * 109.46953 * 38.91550 * 5 4 3 37 37 H 0.97004 * 119.99703 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47220 * 173.95750 * 14 4 3 39 39 H 1.08999 * 109.47088 * 53.95523 * 14 4 3 40 40 H 0.96996 * 120.00134 * 359.97438 * 17 15 14 41 41 H 1.09002 * 109.46858 * 305.00216 * 20 18 17 42 42 H 1.08997 * 109.47021 * 185.00118 * 20 18 17 43 43 H 1.08000 * 120.00147 * 359.97438 * 22 21 20 44 44 H 1.07993 * 120.00551 * 179.97438 * 23 22 21 45 45 H 1.08006 * 119.99747 * 180.02562 * 24 23 22 46 46 H 1.08007 * 119.99965 * 179.72550 * 25 24 23 47 47 H 1.08002 * 120.00145 * 180.25672 * 26 25 24 48 48 H 1.09002 * 109.47140 * 359.97438 * 28 27 18 49 49 H 1.09002 * 109.47299 * 120.00159 * 28 27 18 50 50 H 1.09003 * 109.47295 * 240.00129 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 2.2759 1.4937 2.4045 6 6 3.1427 1.0111 3.5388 7 1 4.1563 0.6919 3.3457 8 6 2.6420 0.9769 4.8230 9 7 1.4080 1.3660 5.0580 10 14 3.7168 0.3794 6.2290 11 1 5.0538 0.0019 5.7042 12 1 3.8666 1.4633 7.2329 13 1 3.0844 -0.8029 6.8676 14 6 4.0037 2.3872 0.9629 15 6 4.8824 2.0558 -0.2158 16 8 4.6886 1.0403 -0.8500 17 7 5.8841 2.8874 -0.5645 18 6 6.7386 2.5649 -1.7100 19 1 6.8786 1.4853 -1.7663 20 6 8.0974 3.2473 -1.5407 21 6 8.8037 2.6697 -0.3413 22 6 9.6322 1.5731 -0.4889 23 6 10.2797 1.0428 0.6114 24 6 10.0993 1.6099 1.8591 25 6 9.2670 2.7036 2.0075 26 6 8.6229 3.2364 0.9065 27 6 6.0855 3.0534 -2.9771 28 6 6.4979 2.4782 -4.3076 29 8 5.2317 3.9059 -2.9266 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0894 34 1 2.6214 1.4025 -0.9314 35 1 2.0346 2.5461 2.5540 36 1 1.3555 0.9104 2.3770 37 1 1.0557 1.3423 5.9615 38 1 4.6143 2.4565 1.8631 39 1 3.5052 3.3406 0.7877 40 1 6.0392 3.6993 -0.0571 41 1 7.9509 4.3176 -1.3954 42 1 8.7012 3.0810 -2.4328 43 1 9.7731 1.1300 -1.4637 44 1 10.9267 0.1859 0.4962 45 1 10.6055 1.1959 2.7187 46 1 9.1225 3.1438 2.9831 47 1 7.9759 4.0935 1.0218 48 1 7.2744 1.7287 -4.1543 49 1 5.6351 2.0154 -4.7866 50 1 6.8830 3.2748 -4.9442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428869597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:22 Heat of formation + Delta-G solvation = -19.410846 kcal Electronic energy + Delta-G solvation = -30454.664084 eV Core-core repulsion = 26447.712976 eV Total energy + Delta-G solvation = -4006.951108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52226 -39.19679 -38.82884 -36.56865 -35.26539 -33.09174 -32.61619 -32.12701 -31.05761 -30.89279 -28.86792 -27.57068 -26.73033 -24.58262 -23.70384 -22.75213 -21.33527 -21.21666 -19.98939 -19.73928 -19.03732 -17.14210 -16.76742 -16.59508 -16.31269 -16.22277 -15.42428 -15.17266 -15.08929 -14.87558 -14.65432 -14.47712 -14.00330 -13.92009 -13.58867 -13.49641 -13.28469 -13.16373 -12.96118 -12.71035 -12.48845 -12.46492 -12.21785 -12.11190 -11.76306 -11.42434 -11.29180 -11.25132 -11.13729 -11.03984 -10.68032 -10.60665 -10.38853 -10.18237 -9.96005 -9.40259 -9.19000 -9.05107 -8.95022 -8.73900 -8.60038 -8.38632 -7.24073 -5.99474 -4.00657 1.17834 1.29209 1.79172 2.93985 2.99770 3.18430 3.31732 3.39541 3.44652 3.62160 3.93141 4.45140 4.51316 4.58525 4.66561 4.84518 4.88581 4.94526 5.01427 5.05609 5.11591 5.18508 5.21808 5.33521 5.36406 5.38711 5.46944 5.60266 5.65857 5.69593 5.83527 5.87290 5.90600 5.93018 6.11661 6.18607 6.31886 6.33433 6.39306 6.43122 6.50238 6.58163 6.87316 7.18936 7.28047 7.29462 7.33412 7.44150 7.62029 7.85759 8.12416 8.20575 8.53095 8.59640 9.07123 9.63213 11.10960 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.004017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.625170 B = 6968.153230 C = 9769.352758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 C 0.077 3.923 4 N -0.513 5.513 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.048 3.952 15 C 0.520 3.480 16 O -0.523 6.523 17 N -0.722 5.722 18 C 0.105 3.895 19 H 0.117 0.883 20 C -0.079 4.079 21 C -0.083 4.083 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.108 4.108 27 C 0.345 3.655 28 C -0.202 4.202 29 O -0.447 6.447 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.022 0.978 34 H 0.080 0.920 35 H -0.010 1.010 36 H 0.042 0.958 37 H 0.260 0.740 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.401 0.599 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.303 4.651 -14.958 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.128 4.128 3 C -0.050 4.050 4 N -0.238 5.238 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.084 4.084 15 C 0.308 3.692 16 O -0.397 6.397 17 N -0.376 5.376 18 C -0.002 4.002 19 H 0.134 0.866 20 C -0.116 4.116 21 C -0.083 4.083 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.126 4.126 27 C 0.218 3.782 28 C -0.260 4.260 29 O -0.318 6.318 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.007 0.993 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.068 0.932 40 H 0.235 0.765 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.101 0.899 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.793 3.926 -15.208 22.993 hybrid contribution 0.146 0.668 1.222 1.400 sum 16.938 4.593 -13.986 22.441 Atomic orbital electron populations 1.23646 0.95963 1.00983 1.04551 1.22798 0.95078 0.98829 0.96116 1.21281 0.94102 0.94024 0.95608 1.61814 1.14657 1.44033 1.03304 1.19833 0.94359 0.95295 0.83776 1.21197 0.99445 1.42487 0.91071 0.91918 1.24967 0.95073 0.95655 0.98818 1.69969 1.14710 1.48190 1.20888 0.86489 0.80728 0.78382 0.82116 1.19671 1.21173 1.21040 1.21852 0.95631 0.94450 0.96469 1.21124 0.80026 0.82636 0.85430 1.90633 1.69525 1.25595 1.53968 1.45842 1.33423 1.26708 1.31598 1.21410 0.90072 1.02746 0.85921 0.86567 1.20712 0.93151 1.00294 0.97487 1.19594 0.97741 0.96588 0.94409 1.20995 0.97339 0.96013 0.98955 1.21122 0.99911 0.99744 0.92867 1.21189 0.98823 0.96383 0.97426 1.21191 0.96646 0.96492 0.98807 1.21021 0.99272 1.00150 0.92153 1.25194 0.80553 0.79944 0.92498 1.22254 1.04209 1.03087 0.96419 1.90407 1.25966 1.26096 1.89378 0.89328 0.89028 0.87304 0.95998 0.90234 0.99254 0.94020 0.93033 0.87094 0.93200 0.76477 0.89837 0.88869 0.86101 0.86153 0.86171 0.85853 0.86174 0.89905 0.88781 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.86 14.32 29.01 0.42 -3.44 16 2 C -0.11 -2.19 8.76 -36.03 -0.32 -2.51 16 3 C 0.08 1.61 4.96 -4.98 -0.02 1.58 16 4 N -0.51 -11.65 4.10 -238.97 -0.98 -12.63 16 5 C 0.19 5.06 4.59 -4.98 -0.02 5.04 16 6 C -0.50 -14.18 8.65 -34.44 -0.30 -14.48 16 7 H 0.06 1.77 7.74 -52.48 -0.41 1.36 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 10 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.05 0.91 5.26 -4.97 -0.03 0.88 16 15 C 0.52 9.06 7.35 -10.99 -0.08 8.98 16 16 O -0.52 -10.59 14.14 5.55 0.08 -10.51 16 17 N -0.72 -9.36 4.10 -54.93 -0.23 -9.59 16 18 C 0.11 1.11 2.20 -69.08 -0.15 0.96 16 19 H 0.12 1.34 7.58 -51.93 -0.39 0.95 16 20 C -0.08 -0.59 4.87 -27.88 -0.14 -0.73 16 21 C -0.08 -0.77 4.95 -104.63 -0.52 -1.29 16 22 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.11 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.11 -1.08 9.10 -39.58 -0.36 -1.44 16 27 C 0.35 3.82 6.47 -29.04 -0.19 3.63 16 28 C -0.20 -1.48 10.33 36.01 0.37 -1.10 16 29 O -0.45 -6.62 17.30 6.00 0.10 -6.51 16 30 H 0.09 1.55 7.84 -52.49 -0.41 1.13 16 31 H 0.09 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 34 H 0.08 1.64 5.81 -51.93 -0.30 1.34 16 35 H -0.01 -0.28 7.98 -51.93 -0.41 -0.70 16 36 H 0.04 1.19 7.12 -51.93 -0.37 0.82 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.11 2.15 7.44 -51.93 -0.39 1.77 16 39 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 40 H 0.40 4.38 7.83 -40.82 -0.32 4.06 16 41 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 46 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.12 1.02 7.57 -52.49 -0.40 0.62 16 48 H 0.08 0.42 8.00 -51.93 -0.42 0.01 16 49 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 420.75 15.07 6.34 6.34 Total: -1.00 -35.26 420.75 -9.97 -45.23 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.99 Total: 5.59 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.01 Total: -8.59 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.47 Total: -48.21 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.18 Total: -17.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.26 -9.97 -45.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428869597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.818 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds