Wall clock time and date at job start Wed Apr 1 2020 03:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00035 * 2 1 4 4 N 1.46897 * 109.47093 * 124.99256 * 3 2 1 5 5 C 1.46894 * 111.00318 * 287.81828 * 4 3 2 6 6 C 1.50695 * 109.47293 * 158.91305 * 5 4 3 7 7 H 1.08005 * 119.99764 * 4.55077 * 6 5 4 8 8 C 1.37881 * 120.00201 * 184.55443 * 6 5 4 9 9 N 1.31506 * 119.99626 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47380 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47242 * 119.99770 * 10 8 6 13 13 H 1.48506 * 109.46912 * 239.99923 * 10 8 6 14 14 C 1.46904 * 110.99678 * 163.86861 * 4 3 2 15 15 C 1.50705 * 109.47255 * 293.95508 * 14 4 3 16 16 O 1.21286 * 119.99511 * 359.97438 * 15 14 4 17 17 N 1.34771 * 120.00209 * 180.02562 * 15 14 4 18 18 C 1.46503 * 120.00105 * 179.97438 * 17 15 14 19 19 H 1.09004 * 109.46885 * 325.00009 * 18 17 15 20 20 C 1.52998 * 109.47200 * 205.00046 * 18 17 15 21 21 C 1.50701 * 109.47240 * 64.99930 * 20 18 17 22 22 C 1.38230 * 120.00133 * 89.99884 * 21 20 18 23 23 C 1.38238 * 120.00374 * 180.02562 * 22 21 20 24 24 C 1.38234 * 119.99440 * 359.95755 * 23 22 21 25 25 C 1.38234 * 120.00142 * 0.27539 * 24 23 22 26 26 C 1.38236 * 120.00214 * 359.51602 * 25 24 23 27 27 C 1.50695 * 109.46898 * 84.99782 * 18 17 15 28 28 C 1.50700 * 119.99830 * 199.99906 * 27 18 17 29 29 O 1.20757 * 120.00633 * 20.00513 * 27 18 17 30 30 H 1.07998 * 119.99908 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00051 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.99908 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.46935 * 4.99003 * 3 2 1 34 34 H 1.09003 * 109.46787 * 244.99353 * 3 2 1 35 35 H 1.08999 * 109.47330 * 278.91710 * 5 4 3 36 36 H 1.09000 * 109.46953 * 38.91550 * 5 4 3 37 37 H 0.97004 * 119.99703 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47220 * 173.95750 * 14 4 3 39 39 H 1.08999 * 109.47088 * 53.95523 * 14 4 3 40 40 H 0.96996 * 120.00134 * 359.97438 * 17 15 14 41 41 H 1.09002 * 109.46858 * 305.00216 * 20 18 17 42 42 H 1.08997 * 109.47021 * 185.00118 * 20 18 17 43 43 H 1.08000 * 120.00147 * 359.97438 * 22 21 20 44 44 H 1.07993 * 120.00551 * 179.97438 * 23 22 21 45 45 H 1.08006 * 119.99747 * 180.02562 * 24 23 22 46 46 H 1.08007 * 119.99965 * 179.72550 * 25 24 23 47 47 H 1.08002 * 120.00145 * 180.25672 * 26 25 24 48 48 H 1.09002 * 109.47140 * 359.97438 * 28 27 18 49 49 H 1.09002 * 109.47299 * 120.00159 * 28 27 18 50 50 H 1.09003 * 109.47295 * 240.00129 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9962 1.3320 1.1346 5 6 2.2759 1.4937 2.4045 6 6 3.1427 1.0111 3.5388 7 1 4.1563 0.6919 3.3457 8 6 2.6420 0.9769 4.8230 9 7 1.4080 1.3660 5.0580 10 14 3.7168 0.3794 6.2290 11 1 5.0538 0.0019 5.7042 12 1 3.8666 1.4633 7.2329 13 1 3.0844 -0.8029 6.8676 14 6 4.0037 2.3872 0.9629 15 6 4.8824 2.0558 -0.2158 16 8 4.6886 1.0403 -0.8500 17 7 5.8841 2.8874 -0.5645 18 6 6.7386 2.5649 -1.7100 19 1 6.8786 1.4853 -1.7663 20 6 8.0974 3.2473 -1.5407 21 6 8.8037 2.6697 -0.3413 22 6 9.6322 1.5731 -0.4889 23 6 10.2797 1.0428 0.6114 24 6 10.0993 1.6099 1.8591 25 6 9.2670 2.7036 2.0075 26 6 8.6229 3.2364 0.9065 27 6 6.0855 3.0534 -2.9771 28 6 6.4979 2.4782 -4.3076 29 8 5.2317 3.9059 -2.9266 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0894 34 1 2.6214 1.4025 -0.9314 35 1 2.0346 2.5461 2.5540 36 1 1.3555 0.9104 2.3770 37 1 1.0557 1.3423 5.9615 38 1 4.6143 2.4565 1.8631 39 1 3.5052 3.3406 0.7877 40 1 6.0392 3.6993 -0.0571 41 1 7.9509 4.3176 -1.3954 42 1 8.7012 3.0810 -2.4328 43 1 9.7731 1.1300 -1.4637 44 1 10.9267 0.1859 0.4962 45 1 10.6055 1.1959 2.7187 46 1 9.1225 3.1438 2.9831 47 1 7.9759 4.0935 1.0218 48 1 7.2744 1.7287 -4.1543 49 1 5.6351 2.0154 -4.7866 50 1 6.8830 3.2748 -4.9442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428869597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:21 Heat of formation + Delta-G solvation = -41.157247 kcal Electronic energy + Delta-G solvation = -30455.607079 eV Core-core repulsion = 26447.712976 eV Total energy + Delta-G solvation = -4007.894103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56609 -40.16818 -39.89194 -38.18606 -36.32716 -34.98580 -34.08784 -33.49806 -31.77516 -31.63683 -30.05091 -29.24426 -28.15372 -25.84607 -25.20568 -23.49769 -22.90245 -22.07030 -21.39645 -20.70017 -20.59453 -18.53849 -18.25728 -17.80169 -17.50464 -17.18048 -16.84277 -16.37800 -16.11781 -15.98973 -15.85973 -15.66470 -15.60502 -15.10649 -15.03364 -14.72255 -14.23905 -14.20656 -14.09766 -13.96221 -13.73395 -13.37873 -13.23089 -13.10655 -12.97617 -12.89466 -12.79077 -12.55981 -12.51980 -12.50560 -12.10094 -11.99291 -11.87481 -11.81085 -11.35744 -11.21448 -10.81273 -10.60003 -10.16692 -9.95446 -9.74244 -9.54091 -9.06562 -8.17814 -6.27654 0.44632 0.56730 0.94271 1.39519 1.40768 1.42492 1.55085 1.63067 2.03865 2.41654 2.87035 3.12602 3.13940 3.36999 3.78217 3.83474 3.94265 4.05328 4.09673 4.18398 4.21519 4.22439 4.24637 4.34422 4.36912 4.50181 4.53547 4.59197 4.65868 4.66538 4.67932 4.70488 4.82385 4.90558 5.02906 5.12252 5.13691 5.20088 5.21808 5.24435 5.37959 5.61912 5.64545 5.69630 5.71408 5.72484 5.85734 6.08809 6.17807 6.21470 6.47868 6.52909 6.57730 6.86485 7.24604 7.41436 8.92754 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.004017 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.625170 B = 6968.153230 C = 9769.352758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C 0.085 3.915 4 N -0.525 5.525 5 C 0.211 3.789 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.281 1.281 14 C 0.045 3.955 15 C 0.525 3.475 16 O -0.555 6.555 17 N -0.707 5.707 18 C 0.102 3.898 19 H 0.112 0.888 20 C -0.069 4.069 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.123 4.123 27 C 0.346 3.654 28 C -0.198 4.198 29 O -0.492 6.492 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.020 0.980 34 H 0.080 0.920 35 H -0.032 1.032 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.411 0.589 41 H 0.092 0.908 42 H 0.129 0.871 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.125 0.875 47 H 0.129 0.871 48 H 0.110 0.890 49 H 0.088 0.912 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.176 4.389 -16.067 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.158 4.158 3 C -0.043 4.043 4 N -0.249 5.249 5 C 0.085 3.915 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.200 1.200 13 H -0.207 1.207 14 C -0.087 4.087 15 C 0.312 3.688 16 O -0.432 6.432 17 N -0.360 5.360 18 C -0.004 4.004 19 H 0.130 0.870 20 C -0.106 4.106 21 C -0.090 4.090 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.141 4.141 27 C 0.223 3.777 28 C -0.256 4.256 29 O -0.367 6.367 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.098 0.902 35 H -0.014 1.014 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.078 0.922 40 H 0.247 0.753 41 H 0.111 0.889 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.146 0.854 48 H 0.129 0.871 49 H 0.107 0.893 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.716 3.692 -16.341 25.119 hybrid contribution -0.436 0.768 1.527 1.764 sum 18.280 4.461 -14.814 23.948 Atomic orbital electron populations 1.23892 0.95349 1.02373 1.01523 1.22784 0.95896 0.98187 0.98925 1.21233 0.93784 0.94518 0.94751 1.61716 1.15130 1.45604 1.02482 1.19437 0.93430 0.93163 0.85465 1.21416 0.99422 1.42714 0.92061 0.92411 1.25819 0.96350 0.95535 1.01442 1.70085 1.16391 1.49009 1.21739 0.85404 0.78965 0.77997 0.78675 1.18999 1.20046 1.20670 1.21864 0.95280 0.94019 0.97502 1.20654 0.80671 0.82778 0.84699 1.90615 1.70684 1.27034 1.54902 1.45688 1.32157 1.26035 1.32105 1.21688 0.91042 1.02871 0.84789 0.87012 1.20745 0.91327 1.00256 0.98279 1.19805 0.97854 0.96708 0.94623 1.21369 0.96695 0.95737 1.00021 1.21441 1.00261 1.00319 0.92808 1.21440 0.99104 0.96580 0.98360 1.21401 0.97435 0.97175 0.99349 1.21268 0.99559 1.00703 0.92591 1.25702 0.79271 0.78762 0.94000 1.22301 1.04812 1.04281 0.94160 1.90406 1.27953 1.28280 1.90051 0.88743 0.86731 0.87958 0.96204 0.90150 1.01416 0.96801 0.92712 0.87730 0.92222 0.75301 0.88927 0.85339 0.83558 0.84451 0.85322 0.85658 0.85351 0.87145 0.89339 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.90 14.32 67.78 0.97 -5.92 16 2 C -0.14 -5.66 8.76 25.64 0.22 -5.43 16 3 C 0.08 3.59 4.96 85.56 0.42 4.02 16 4 N -0.52 -24.53 4.10 -909.97 -3.73 -28.26 16 5 C 0.21 11.50 4.59 85.56 0.39 11.90 16 6 C -0.52 -29.74 8.65 25.60 0.22 -29.52 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 8 C 0.01 0.38 5.46 84.66 0.46 0.85 16 9 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 10 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.04 1.75 5.26 85.56 0.45 2.20 16 15 C 0.53 18.38 7.35 87.66 0.64 19.02 16 16 O -0.55 -22.62 14.14 -3.05 -0.04 -22.66 16 17 N -0.71 -17.85 4.10 -446.09 -1.83 -19.68 16 18 C 0.10 1.96 2.20 44.24 0.10 2.06 16 19 H 0.11 2.35 7.58 -2.38 -0.02 2.33 16 20 C -0.07 -0.83 4.87 29.85 0.15 -0.68 16 21 C -0.09 -1.48 4.95 -19.87 -0.10 -1.58 16 22 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 23 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 24 C -0.14 -2.70 10.05 22.27 0.22 -2.48 16 25 C -0.14 -2.82 10.05 22.27 0.22 -2.60 16 26 C -0.12 -2.35 9.10 22.27 0.20 -2.15 16 27 C 0.35 7.03 6.47 29.10 0.19 7.22 16 28 C -0.20 -2.31 10.33 71.24 0.74 -1.57 16 29 O -0.49 -14.20 17.30 -1.44 -0.02 -14.23 16 30 H 0.09 3.23 7.84 -2.91 -0.02 3.21 16 31 H 0.11 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.02 0.84 7.70 -2.39 -0.02 0.82 16 34 H 0.08 3.39 5.81 -2.39 -0.01 3.38 16 35 H -0.03 -1.83 7.98 -2.39 -0.02 -1.85 16 36 H 0.01 0.82 7.12 -2.39 -0.02 0.81 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.10 4.18 7.44 -2.39 -0.02 4.17 16 39 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 40 H 0.41 8.70 7.83 -92.71 -0.73 7.97 16 41 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 42 H 0.13 0.70 8.09 -2.39 -0.02 0.68 16 43 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 47 H 0.13 2.08 7.57 -2.91 -0.02 2.06 16 48 H 0.11 0.67 8.00 -2.39 -0.02 0.65 16 49 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 50 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -77.76 420.75 2.83 -74.92 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.20 Total: 27.60 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.95 Total: -8.45 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -5.27 Total: -103.81 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.07 Total: -36.89 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -77.76 2.83 -74.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428869597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.767 kcal (2) G-P(sol) polarization free energy of solvation -77.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds