Wall clock time and date at job start Wed Apr 1 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00025 * 2 1 4 4 N 1.34779 * 119.99912 * 180.02562 * 2 1 3 5 5 C 1.46492 * 119.99989 * 5.05593 * 4 2 1 6 6 C 1.52994 * 109.47627 * 274.74163 * 5 4 2 7 7 C 1.50700 * 109.47597 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99881 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.46492 * 120.00170 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47354 * 184.80612 * 10 9 7 12 12 C 1.50697 * 115.55323 * 296.90427 * 11 10 9 13 13 H 1.08002 * 119.99659 * 95.20193 * 12 11 10 14 14 C 1.37869 * 120.00114 * 274.93026 * 12 11 10 15 15 N 1.31513 * 120.00199 * 355.40809 * 14 12 11 16 16 Si 1.86797 * 120.00025 * 175.40624 * 14 12 11 17 17 H 1.48504 * 109.47403 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47300 * 120.00400 * 16 14 12 19 19 H 1.48501 * 109.47456 * 239.99943 * 16 14 12 20 20 C 1.53005 * 117.49691 * 82.57793 * 11 10 9 21 21 C 1.53003 * 117.50022 * 151.23190 * 11 10 9 22 22 C 1.46505 * 119.99746 * 185.05539 * 4 2 1 23 23 C 1.50691 * 109.47252 * 270.00001 * 22 4 2 24 24 C 1.38240 * 120.00106 * 269.73092 * 23 22 4 25 25 C 1.38233 * 119.99877 * 179.76932 * 24 23 22 26 26 C 1.38241 * 120.00225 * 0.50133 * 25 24 23 27 27 C 1.38238 * 119.99695 * 359.74891 * 26 25 24 28 28 C 1.38232 * 120.00102 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47001 * 185.22923 * 1 2 3 30 30 H 1.09004 * 109.46919 * 305.22589 * 1 2 3 31 31 H 1.09000 * 109.47617 * 65.22464 * 1 2 3 32 32 H 1.09004 * 109.47079 * 154.74001 * 5 4 2 33 33 H 1.08998 * 109.47283 * 34.74514 * 5 4 2 34 34 H 1.09004 * 109.47023 * 59.99804 * 6 5 4 35 35 H 1.08998 * 109.47076 * 300.00478 * 6 5 4 36 36 H 0.96999 * 119.99805 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.47348 * 64.80919 * 10 9 7 38 38 H 1.09004 * 109.47432 * 304.81094 * 10 9 7 39 39 H 0.97003 * 120.00236 * 185.00005 * 15 14 12 40 40 H 1.08999 * 117.49546 * 215.00806 * 20 11 10 41 41 H 1.09000 * 117.49831 * 0.02562 * 20 11 10 42 42 H 1.09004 * 117.49466 * 359.97438 * 21 11 10 43 43 H 1.09001 * 117.50070 * 144.97561 * 21 11 10 44 44 H 1.08998 * 109.47176 * 30.00334 * 22 4 2 45 45 H 1.09006 * 109.46643 * 150.00093 * 22 4 2 46 46 H 1.07998 * 120.00009 * 359.97438 * 24 23 22 47 47 H 1.08007 * 120.00046 * 180.23060 * 25 24 23 48 48 H 1.07997 * 119.99925 * 179.72493 * 26 25 24 49 49 H 1.07994 * 119.99971 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.00389 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4526 -2.4334 -0.1129 6 6 0.9863 -2.8785 1.2746 7 6 0.2377 -4.1813 1.1591 8 8 0.0920 -4.7028 0.0738 9 7 -0.2698 -4.7670 2.2617 10 6 -0.9980 -6.0331 2.1493 11 6 -1.5673 -6.4172 3.5165 12 6 -0.5478 -6.6788 4.5950 13 1 -0.2702 -5.8900 5.2785 14 6 0.0263 -7.9267 4.7128 15 7 -0.3804 -8.9129 3.9436 16 14 1.3819 -8.2168 5.9648 17 1 1.6541 -6.9560 6.7008 18 1 0.9537 -9.2667 6.9238 19 1 2.6153 -8.6586 5.2656 20 6 -2.8909 -5.7745 3.9364 21 6 -2.8493 -7.2520 3.5388 22 6 3.6416 -1.1697 0.1113 23 6 4.2509 -1.1073 -1.2655 24 6 4.5376 -2.2748 -1.9481 25 6 5.0921 -2.2175 -3.2130 26 6 5.3695 -0.9928 -3.7913 27 6 5.0876 0.1745 -3.1066 28 6 4.5288 0.1173 -1.8436 29 1 -0.3633 -1.0234 0.0937 30 1 -0.3633 0.5928 0.8395 31 1 -0.3634 0.4306 -0.9330 32 1 2.1088 -3.1935 -0.5369 33 1 0.5869 -2.2983 -0.7612 34 1 0.3301 -2.1183 1.6985 35 1 1.8521 -3.0136 1.9229 36 1 -0.1529 -4.3501 3.1297 37 1 -0.3188 -6.8137 1.8064 38 1 -1.8133 -5.9212 1.4346 39 1 -0.0287 -9.8074 4.0751 40 1 -3.0240 -5.5408 4.9927 41 1 -3.3561 -5.0785 3.2384 42 1 -3.2873 -7.5273 2.5793 43 1 -2.9551 -7.9908 4.3332 44 1 3.9631 -0.3041 0.6905 45 1 3.9661 -2.0824 0.6112 46 1 4.3252 -3.2316 -1.4944 47 1 5.3126 -3.1295 -3.7479 48 1 5.8069 -0.9482 -4.7778 49 1 5.3048 1.1312 -3.5582 50 1 4.3090 1.0292 -1.3085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431163980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:18 Heat of formation + Delta-G solvation = -30.223819 kcal Electronic energy + Delta-G solvation = -29575.541627 eV Core-core repulsion = 25568.121633 eV Total energy + Delta-G solvation = -4007.419994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45132 -39.24209 -38.91424 -36.83492 -36.00300 -33.39596 -32.87318 -32.03195 -31.05264 -30.61933 -29.80722 -26.79888 -25.97542 -25.33650 -23.68214 -22.64678 -21.71228 -21.21931 -19.87009 -19.36874 -19.19176 -17.40705 -17.09782 -16.88691 -16.36610 -15.79876 -15.72864 -15.26434 -15.13870 -15.05139 -14.85007 -14.68797 -13.96103 -13.70542 -13.57799 -13.53968 -13.38200 -12.95141 -12.75391 -12.72568 -12.55552 -12.42797 -12.22720 -11.96655 -11.79647 -11.63829 -11.44711 -11.23185 -11.10912 -11.06409 -11.00909 -10.57896 -10.29975 -10.04134 -9.71853 -9.45801 -9.10701 -9.07753 -9.02569 -8.85482 -8.57051 -8.35969 -8.16345 -6.14464 -4.24752 1.09594 1.25140 2.44732 2.80067 3.05165 3.19369 3.29120 3.30285 3.67473 3.80851 4.28814 4.42011 4.58142 4.69759 4.79853 4.83500 4.86539 4.97134 4.99040 5.11888 5.13029 5.17605 5.24701 5.30484 5.32502 5.45044 5.47845 5.51967 5.55998 5.62216 5.81237 5.88770 5.91789 5.96581 6.26618 6.27121 6.29481 6.34634 6.40511 6.44625 6.48114 6.64380 6.79279 6.83196 7.06002 7.16583 7.18109 7.31749 7.46921 7.74351 7.98467 8.16986 8.26550 8.72836 8.77790 9.43035 10.92596 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002349 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.683376 B =11917.903714 C =12769.592767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.516 3.484 3 O -0.547 6.547 4 N -0.608 5.608 5 C 0.125 3.875 6 C -0.164 4.164 7 C 0.506 3.494 8 O -0.560 6.560 9 N -0.700 5.700 10 C 0.163 3.837 11 C 0.023 3.977 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.211 4.211 21 C -0.143 4.143 22 C 0.152 3.848 23 C -0.107 4.107 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.095 4.095 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 15.421 -9.970 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.306 3.694 3 O -0.425 6.425 4 N -0.340 5.340 5 C 0.002 3.998 6 C -0.205 4.205 7 C 0.290 3.710 8 O -0.440 6.440 9 N -0.349 5.349 10 C 0.040 3.960 11 C 0.022 3.978 12 C -0.538 4.538 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.248 4.248 21 C -0.181 4.181 22 C 0.030 3.970 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.145 4.145 28 C -0.114 4.114 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.998 15.394 -10.796 20.063 hybrid contribution 0.709 -0.366 1.117 1.372 sum 7.707 15.028 -9.680 19.466 Atomic orbital electron populations 1.22055 0.91787 1.05071 1.05227 1.20839 0.90670 0.83001 0.74909 1.90673 1.70734 1.31119 1.49939 1.48127 1.06302 1.06570 1.73003 1.21371 0.97831 0.84742 0.95849 1.22146 1.01896 0.96603 0.99850 1.20298 0.79790 0.86131 0.84749 1.90679 1.60146 1.65898 1.27230 1.46012 1.54822 1.24726 1.09315 1.20996 0.94388 0.83534 0.97125 1.19052 0.86969 0.98891 0.92860 1.20377 1.22199 0.97056 1.14180 0.92142 1.24992 0.96433 0.96236 0.95436 1.69996 1.42814 1.00464 1.37701 0.86584 0.82190 0.78329 0.81174 1.19691 1.21008 1.20924 1.23024 1.05577 0.96306 0.99900 1.22468 1.02995 0.92060 1.00548 1.20387 0.79315 1.03976 0.93298 1.20219 0.99803 0.93441 0.97320 1.21132 0.98374 0.97877 0.94928 1.21149 0.99683 0.97845 0.95574 1.21178 1.00025 0.92712 0.99782 1.21168 0.99836 0.98275 0.95203 1.21225 0.97101 0.97797 0.95236 0.89712 0.88616 0.88827 0.89062 0.89241 0.88806 0.88513 0.76365 0.91445 0.94122 0.92874 0.90396 0.91735 0.91818 0.89513 0.89030 0.89377 0.85932 0.86047 0.86293 0.86250 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.59 36.00 0.35 -1.21 16 2 C 0.52 5.88 7.74 -10.99 -0.08 5.79 16 3 O -0.55 -7.88 15.93 5.56 0.09 -7.79 16 4 N -0.61 -6.26 2.47 -175.07 -0.43 -6.69 16 5 C 0.13 1.30 4.28 -4.05 -0.02 1.29 16 6 C -0.16 -1.76 5.72 -27.89 -0.16 -1.92 16 7 C 0.51 7.94 7.83 -10.99 -0.09 7.86 16 8 O -0.56 -10.71 15.98 5.56 0.09 -10.62 16 9 N -0.70 -12.10 5.46 -60.30 -0.33 -12.43 16 10 C 0.16 3.43 5.51 -4.05 -0.02 3.41 16 11 C 0.02 0.51 1.50 -155.66 -0.23 0.28 16 12 C -0.50 -12.28 8.50 -34.44 -0.29 -12.58 16 13 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 14 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 15 N -0.87 -23.47 12.65 55.43 0.70 -22.77 16 16 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.21 -4.18 9.96 -26.69 -0.27 -4.45 16 21 C -0.14 -3.15 9.15 -26.69 -0.24 -3.39 16 22 C 0.15 1.51 5.47 -5.20 -0.03 1.48 16 23 C -0.11 -1.13 5.46 -104.62 -0.57 -1.70 16 24 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.10 -1.04 9.57 -39.58 -0.38 -1.42 16 29 H 0.08 0.67 4.84 -51.93 -0.25 0.42 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.00 7.99 -51.93 -0.42 0.59 16 33 H 0.09 0.94 6.55 -51.93 -0.34 0.60 16 34 H 0.09 0.85 7.05 -51.93 -0.37 0.49 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.40 6.37 8.26 -40.82 -0.34 6.03 16 37 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 44 H 0.09 0.95 7.44 -51.93 -0.39 0.56 16 45 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 48 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 49 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 50 H 0.13 1.47 7.38 -52.49 -0.39 1.08 16 LS Contribution 418.01 15.07 6.30 6.30 Total: -1.00 -30.47 418.01 -10.26 -40.73 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.94 Total: 9.38 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -3.71 Total: -10.95 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.06 Total: -41.89 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -30.47 -10.26 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431163980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.507 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds