Wall clock time and date at job start Wed Apr 1 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00025 * 2 1 4 4 N 1.34779 * 119.99912 * 180.02562 * 2 1 3 5 5 C 1.46492 * 119.99989 * 5.05593 * 4 2 1 6 6 C 1.52994 * 109.47627 * 274.74163 * 5 4 2 7 7 C 1.50700 * 109.47597 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99881 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00140 * 180.02562 * 7 6 5 10 10 C 1.46492 * 120.00170 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47354 * 184.80612 * 10 9 7 12 12 C 1.50697 * 115.55323 * 296.90427 * 11 10 9 13 13 H 1.08002 * 119.99659 * 95.20193 * 12 11 10 14 14 C 1.37869 * 120.00114 * 274.93026 * 12 11 10 15 15 N 1.31513 * 120.00199 * 355.40809 * 14 12 11 16 16 Si 1.86797 * 120.00025 * 175.40624 * 14 12 11 17 17 H 1.48504 * 109.47403 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47300 * 120.00400 * 16 14 12 19 19 H 1.48501 * 109.47456 * 239.99943 * 16 14 12 20 20 C 1.53005 * 117.49691 * 82.57793 * 11 10 9 21 21 C 1.53003 * 117.50022 * 151.23190 * 11 10 9 22 22 C 1.46505 * 119.99746 * 185.05539 * 4 2 1 23 23 C 1.50691 * 109.47252 * 270.00001 * 22 4 2 24 24 C 1.38240 * 120.00106 * 269.73092 * 23 22 4 25 25 C 1.38233 * 119.99877 * 179.76932 * 24 23 22 26 26 C 1.38241 * 120.00225 * 0.50133 * 25 24 23 27 27 C 1.38238 * 119.99695 * 359.74891 * 26 25 24 28 28 C 1.38232 * 120.00102 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47001 * 185.22923 * 1 2 3 30 30 H 1.09004 * 109.46919 * 305.22589 * 1 2 3 31 31 H 1.09000 * 109.47617 * 65.22464 * 1 2 3 32 32 H 1.09004 * 109.47079 * 154.74001 * 5 4 2 33 33 H 1.08998 * 109.47283 * 34.74514 * 5 4 2 34 34 H 1.09004 * 109.47023 * 59.99804 * 6 5 4 35 35 H 1.08998 * 109.47076 * 300.00478 * 6 5 4 36 36 H 0.96999 * 119.99805 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.47348 * 64.80919 * 10 9 7 38 38 H 1.09004 * 109.47432 * 304.81094 * 10 9 7 39 39 H 0.97003 * 120.00236 * 185.00005 * 15 14 12 40 40 H 1.08999 * 117.49546 * 215.00806 * 20 11 10 41 41 H 1.09000 * 117.49831 * 0.02562 * 20 11 10 42 42 H 1.09004 * 117.49466 * 359.97438 * 21 11 10 43 43 H 1.09001 * 117.50070 * 144.97561 * 21 11 10 44 44 H 1.08998 * 109.47176 * 30.00334 * 22 4 2 45 45 H 1.09006 * 109.46643 * 150.00093 * 22 4 2 46 46 H 1.07998 * 120.00009 * 359.97438 * 24 23 22 47 47 H 1.08007 * 120.00046 * 180.23060 * 25 24 23 48 48 H 1.07997 * 119.99925 * 179.72493 * 26 25 24 49 49 H 1.07994 * 119.99971 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.00389 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4526 -2.4334 -0.1129 6 6 0.9863 -2.8785 1.2746 7 6 0.2377 -4.1813 1.1591 8 8 0.0920 -4.7028 0.0738 9 7 -0.2698 -4.7670 2.2617 10 6 -0.9980 -6.0331 2.1493 11 6 -1.5673 -6.4172 3.5165 12 6 -0.5478 -6.6788 4.5950 13 1 -0.2702 -5.8900 5.2785 14 6 0.0263 -7.9267 4.7128 15 7 -0.3804 -8.9129 3.9436 16 14 1.3819 -8.2168 5.9648 17 1 1.6541 -6.9560 6.7008 18 1 0.9537 -9.2667 6.9238 19 1 2.6153 -8.6586 5.2656 20 6 -2.8909 -5.7745 3.9364 21 6 -2.8493 -7.2520 3.5388 22 6 3.6416 -1.1697 0.1113 23 6 4.2509 -1.1073 -1.2655 24 6 4.5376 -2.2748 -1.9481 25 6 5.0921 -2.2175 -3.2130 26 6 5.3695 -0.9928 -3.7913 27 6 5.0876 0.1745 -3.1066 28 6 4.5288 0.1173 -1.8436 29 1 -0.3633 -1.0234 0.0937 30 1 -0.3633 0.5928 0.8395 31 1 -0.3634 0.4306 -0.9330 32 1 2.1088 -3.1935 -0.5369 33 1 0.5869 -2.2983 -0.7612 34 1 0.3301 -2.1183 1.6985 35 1 1.8521 -3.0136 1.9229 36 1 -0.1529 -4.3501 3.1297 37 1 -0.3188 -6.8137 1.8064 38 1 -1.8133 -5.9212 1.4346 39 1 -0.0287 -9.8074 4.0751 40 1 -3.0240 -5.5408 4.9927 41 1 -3.3561 -5.0785 3.2384 42 1 -3.2873 -7.5273 2.5793 43 1 -2.9551 -7.9908 4.3332 44 1 3.9631 -0.3041 0.6905 45 1 3.9661 -2.0824 0.6112 46 1 4.3252 -3.2316 -1.4944 47 1 5.3126 -3.1295 -3.7479 48 1 5.8069 -0.9482 -4.7778 49 1 5.3048 1.1312 -3.5582 50 1 4.3090 1.0292 -1.3085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431163980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:17 Heat of formation + Delta-G solvation = -46.137215 kcal Electronic energy + Delta-G solvation = -29576.231684 eV Core-core repulsion = 25568.121633 eV Total energy + Delta-G solvation = -4008.110050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34352 -40.48941 -39.75252 -38.47295 -36.96667 -34.88727 -33.94260 -33.67383 -31.80203 -31.57388 -30.52830 -28.27045 -27.29929 -26.66891 -24.74633 -23.41389 -22.90023 -22.46417 -21.34327 -20.93275 -20.06342 -18.43031 -18.21232 -17.89738 -17.62070 -16.88785 -16.76589 -16.61337 -16.39599 -16.26658 -15.86495 -15.75360 -15.48559 -14.91810 -14.53580 -14.41201 -14.31306 -14.20294 -14.06201 -13.62103 -13.54957 -13.40164 -13.32398 -13.19506 -12.97984 -12.90216 -12.85515 -12.64776 -12.31588 -12.23781 -12.06381 -11.99789 -11.85367 -11.38317 -10.95371 -10.92091 -10.88053 -10.42543 -10.04153 -9.84631 -9.83439 -9.77085 -9.65973 -8.08009 -6.21944 0.34151 0.48548 1.42002 1.46803 1.54948 1.58402 1.79104 1.94023 2.42754 2.54920 2.93615 3.20503 3.51891 3.63129 3.79247 3.91157 3.95950 3.98404 4.14100 4.17343 4.27839 4.28611 4.31437 4.45760 4.54778 4.56869 4.58738 4.63607 4.68414 4.70502 4.72936 4.75963 4.78421 4.89800 5.03470 5.08585 5.08926 5.14340 5.15606 5.32098 5.44712 5.55451 5.59199 5.60278 5.64711 5.67497 5.74674 5.80966 6.09679 6.34147 6.38986 6.81925 6.87973 7.13049 7.43897 7.48420 8.98927 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002349 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.683376 B =11917.903714 C =12769.592767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.510 3.490 3 O -0.582 6.582 4 N -0.601 5.601 5 C 0.131 3.869 6 C -0.149 4.149 7 C 0.507 3.493 8 O -0.594 6.594 9 N -0.700 5.700 10 C 0.179 3.821 11 C 0.003 3.997 12 C -0.501 4.501 13 H 0.065 0.935 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.947 3.053 17 H -0.260 1.260 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.177 4.177 21 C -0.158 4.158 22 C 0.151 3.849 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.122 4.122 27 C -0.134 4.134 28 C -0.112 4.112 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.411 0.589 37 H 0.025 0.975 38 H 0.040 0.960 39 H 0.258 0.742 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.135 0.865 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 16.873 -9.808 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.301 3.699 3 O -0.462 6.462 4 N -0.332 5.332 5 C 0.008 3.992 6 C -0.189 4.189 7 C 0.295 3.705 8 O -0.476 6.476 9 N -0.349 5.349 10 C 0.055 3.945 11 C 0.003 3.997 12 C -0.539 4.539 13 H 0.083 0.917 14 C -0.176 4.176 15 N -0.546 5.546 16 Si 0.773 3.227 17 H -0.184 1.184 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.214 4.214 21 C -0.196 4.196 22 C 0.029 3.971 23 C -0.117 4.117 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.152 4.152 28 C -0.131 4.131 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.247 0.753 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.160 0.840 49 H 0.153 0.847 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.231 16.868 -10.612 21.199 hybrid contribution 0.635 -0.805 1.013 1.441 sum 7.866 16.063 -9.599 20.298 Atomic orbital electron populations 1.22082 0.89499 1.05911 1.06196 1.21377 0.91816 0.82589 0.74099 1.90663 1.71648 1.32284 1.51639 1.48108 1.06442 1.06307 1.72368 1.21285 0.97778 0.84510 0.95636 1.22090 1.02224 0.94101 1.00518 1.21056 0.78875 0.87084 0.83519 1.90670 1.61255 1.67181 1.28531 1.45907 1.54999 1.23580 1.10424 1.20517 0.93613 0.84199 0.96192 1.19101 0.87329 1.00271 0.93034 1.20701 1.22047 0.96850 1.14266 0.91667 1.25683 0.98373 0.96389 0.97202 1.70118 1.44361 1.00653 1.39451 0.85679 0.79485 0.78381 0.79110 1.18356 1.21398 1.21480 1.23005 1.02828 0.94818 1.00742 1.22387 1.03839 0.93182 1.00202 1.20449 0.79135 1.04392 0.93149 1.20311 1.00142 0.93542 0.97685 1.21299 0.98667 0.97988 0.95404 1.21456 0.99175 0.98813 0.95502 1.21481 0.99559 0.92298 1.00696 1.21417 0.99441 0.99432 0.94870 1.21256 0.98251 0.97568 0.96004 0.88877 0.87395 0.88077 0.89601 0.89128 0.86202 0.86863 0.75295 0.95628 0.94188 0.93304 0.89854 0.89194 0.91324 0.91969 0.89801 0.87790 0.85205 0.84345 0.84007 0.84728 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.59 71.23 0.68 -1.94 16 2 C 0.51 10.92 7.74 87.66 0.68 11.60 16 3 O -0.58 -16.54 15.93 -3.03 -0.05 -16.59 16 4 N -0.60 -11.46 2.47 -826.19 -2.04 -13.50 16 5 C 0.13 2.47 4.28 86.38 0.37 2.84 16 6 C -0.15 -2.78 5.72 29.85 0.17 -2.61 16 7 C 0.51 15.06 7.83 87.66 0.69 15.74 16 8 O -0.59 -22.26 15.98 -3.04 -0.05 -22.31 16 9 N -0.70 -23.08 5.46 -463.07 -2.53 -25.61 16 10 C 0.18 7.52 5.51 86.38 0.48 8.00 16 11 C 0.00 0.15 1.50 -52.93 -0.08 0.07 16 12 C -0.50 -24.20 8.50 25.60 0.22 -23.98 16 13 H 0.07 3.03 7.82 -2.91 -0.02 3.00 16 14 C 0.02 1.23 5.43 84.65 0.46 1.69 16 15 N -0.91 -49.72 12.65 21.44 0.27 -49.45 16 16 Si 0.95 40.63 29.54 68.60 2.03 42.65 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 20 C -0.18 -6.64 9.96 30.62 0.30 -6.33 16 21 C -0.16 -6.95 9.15 30.62 0.28 -6.67 16 22 C 0.15 2.85 5.47 85.63 0.47 3.32 16 23 C -0.12 -2.40 5.46 -19.87 -0.11 -2.51 16 24 C -0.12 -2.22 9.70 22.27 0.22 -2.01 16 25 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 26 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 27 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 28 C -0.11 -2.45 9.57 22.27 0.21 -2.24 16 29 H 0.09 1.21 4.84 -2.39 -0.01 1.20 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.76 7.99 -2.38 -0.02 1.74 16 33 H 0.09 1.73 6.55 -2.39 -0.02 1.71 16 34 H 0.12 1.70 7.05 -2.38 -0.02 1.69 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 12.05 8.26 -92.71 -0.77 11.28 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 39 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 40 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.08 1.72 7.44 -2.39 -0.02 1.70 16 45 H 0.10 1.58 8.01 -2.38 -0.02 1.57 16 46 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 47 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 48 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 50 H 0.12 2.75 7.38 -2.91 -0.02 2.73 16 Total: -1.00 -66.49 418.01 3.51 -62.98 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.17 Total: 33.08 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.71 Total: -11.26 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -4.30 Total: -88.55 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.10 Total: -38.90 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -66.49 3.51 -62.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431163980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.840 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds