Wall clock time and date at job start Wed Apr 1 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81402 * 109.47256 * 2 1 4 4 O 1.42098 * 109.46734 * 296.38604 * 3 2 1 5 5 C 1.81402 * 102.99662 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.47281 * 294.99200 * 5 3 2 7 7 C 1.52995 * 109.47205 * 55.00428 * 5 3 2 8 8 C 1.53000 * 109.47022 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46758 * 299.99312 * 8 7 5 10 10 C 1.53002 * 109.47159 * 60.00277 * 9 8 7 11 11 H 1.08996 * 109.47377 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.47065 * 59.99512 * 10 9 8 13 13 C 1.34785 * 119.99794 * 85.00204 * 12 10 9 14 14 O 1.21595 * 119.99805 * 359.97438 * 13 12 10 15 15 N 1.34764 * 120.00110 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00175 * 180.27579 * 15 13 12 17 17 C 1.53006 * 109.47207 * 179.72453 * 16 15 13 18 18 C 1.53000 * 109.46847 * 299.99696 * 17 16 15 19 19 C 1.52993 * 109.47078 * 60.00069 * 17 16 15 20 20 C 1.50704 * 109.47105 * 180.02562 * 17 16 15 21 21 H 1.08001 * 120.00005 * 1.34662 * 20 17 16 22 22 C 1.37869 * 120.00155 * 181.34409 * 20 17 16 23 23 N 1.31511 * 120.00309 * 193.97598 * 22 20 17 24 24 Si 1.86799 * 119.99845 * 13.97762 * 22 20 17 25 25 H 1.48504 * 109.47349 * 84.54915 * 24 22 20 26 26 H 1.48500 * 109.47227 * 204.54700 * 24 22 20 27 27 H 1.48496 * 109.47179 * 324.54775 * 24 22 20 28 28 C 1.52997 * 109.46802 * 300.00010 * 10 9 8 29 29 H 1.09004 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47380 * 300.00279 * 1 2 3 31 31 H 1.09007 * 109.47168 * 60.00256 * 1 2 3 32 32 H 1.09006 * 109.47095 * 239.99641 * 2 1 3 33 33 H 1.09000 * 109.46925 * 120.00017 * 2 1 3 34 34 H 1.09004 * 109.47030 * 299.98880 * 7 5 3 35 35 H 1.08996 * 109.48003 * 59.99214 * 7 5 3 36 36 H 1.08997 * 109.47728 * 59.99235 * 8 7 5 37 37 H 1.09007 * 109.47226 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47650 * 300.00183 * 9 8 7 39 39 H 1.09004 * 109.47356 * 180.02562 * 9 8 7 40 40 H 0.96994 * 120.00336 * 265.00536 * 12 10 9 41 41 H 0.97006 * 120.00005 * 359.97438 * 15 13 12 42 42 H 1.08998 * 109.47324 * 299.72509 * 16 15 13 43 43 H 1.09006 * 109.47196 * 59.72612 * 16 15 13 44 44 H 1.08998 * 109.46938 * 69.37349 * 18 17 16 45 45 H 1.08999 * 109.46958 * 189.37019 * 18 17 16 46 46 H 1.08999 * 109.47477 * 309.36875 * 18 17 16 47 47 H 1.08994 * 109.47508 * 60.00355 * 19 17 16 48 48 H 1.09010 * 109.47052 * 179.97438 * 19 17 16 49 49 H 1.09001 * 109.47059 * 299.99509 * 19 17 16 50 50 H 0.97006 * 120.00387 * 180.02562 * 23 22 20 51 51 H 1.09006 * 109.46808 * 180.02562 * 28 10 9 52 52 H 1.09003 * 109.47163 * 299.99721 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7312 2.3552 -1.2002 5 6 3.9371 1.5057 0.0008 6 1 4.2488 1.0334 0.9324 7 6 4.3511 0.6260 -1.1805 8 6 5.8714 0.4540 -1.1802 9 6 6.5396 1.8246 -1.3062 10 6 6.1257 2.7044 -0.1249 11 1 6.6021 3.6806 -0.2144 12 7 6.5451 2.0698 1.1271 13 6 7.7961 2.2581 1.5920 14 8 8.5767 2.9543 0.9720 15 7 8.1821 1.6739 2.7435 16 6 9.5400 1.8835 3.2519 17 6 9.7157 1.1208 4.5667 18 6 8.7024 1.6327 5.5925 19 6 9.4866 -0.3723 4.3246 20 6 11.1123 1.3369 5.0900 21 1 11.7983 1.9738 4.5513 22 6 11.5143 0.7217 6.2565 23 7 12.6149 1.1129 6.8608 24 14 10.4955 -0.6675 6.9787 25 1 10.8740 -1.9483 6.3293 26 1 10.7485 -0.7594 8.4392 27 1 9.0543 -0.3993 6.7420 28 6 4.6054 2.8762 -0.1252 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8747 -0.3503 -1.0910 35 1 4.0394 1.0982 -2.1121 36 1 6.1835 -0.0181 -0.2487 37 1 6.1663 -0.1732 -2.0216 38 1 6.2276 2.2967 -2.2378 39 1 7.6228 1.7021 -1.3065 40 1 5.9225 1.5141 1.6215 41 1 7.5595 1.1182 3.2380 42 1 10.2619 1.5189 2.5212 43 1 9.7033 2.9474 3.4244 44 1 7.6988 1.3294 5.2943 45 1 8.9330 1.2129 6.5716 46 1 8.7536 2.7204 5.6423 47 1 10.2084 -0.7370 3.5939 48 1 9.6122 -0.9157 5.2612 49 1 8.4762 -0.5283 3.9464 50 1 12.8979 0.6798 7.6814 51 1 4.3105 3.5034 0.7161 52 1 4.2933 3.3484 -1.0568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458493803.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:45 Heat of formation + Delta-G solvation = -72.293576 kcal Electronic energy + Delta-G solvation = -29236.352213 eV Core-core repulsion = 25362.551890 eV Total energy + Delta-G solvation = -3873.800324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.25268 -38.46218 -36.67604 -36.02826 -33.73297 -33.30444 -33.10139 -31.50283 -31.21557 -29.75258 -26.41056 -25.81488 -24.82655 -24.31773 -23.01104 -22.63585 -21.18105 -19.48173 -19.04200 -18.41901 -17.77462 -16.45709 -16.14133 -16.01319 -15.57185 -15.42069 -15.25473 -15.17841 -14.94125 -14.37489 -14.25979 -13.94593 -13.47735 -13.38018 -13.11578 -12.92611 -12.81021 -12.75087 -12.61821 -12.53169 -12.43296 -12.24443 -12.21306 -12.05337 -11.78072 -11.56001 -11.31027 -11.18940 -10.91454 -10.65195 -10.43056 -10.30837 -10.17924 -10.07270 -10.00544 -9.80786 -9.13882 -9.02971 -8.69632 -8.54330 -8.49171 -8.33231 -6.15119 -4.12301 1.10466 2.18902 3.00598 3.22469 3.29223 3.37442 3.38831 3.56877 4.20132 4.25132 4.34533 4.46829 4.53636 4.56206 4.64235 4.81835 4.89476 4.93884 5.02060 5.12527 5.15577 5.18781 5.31073 5.33359 5.41936 5.55311 5.57685 5.60495 5.64670 5.74971 5.85882 5.92610 6.03057 6.04873 6.07837 6.10319 6.34104 6.44825 6.52904 6.61946 6.65432 6.70315 6.83157 6.99546 7.20759 7.27337 7.43440 7.72651 8.33928 8.47411 8.90426 8.96983 9.48668 10.98014 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.002417 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.298026 B =11580.032579 C =12482.320829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.453 4.453 3 S 1.241 4.759 4 O -0.843 6.843 5 C -0.409 4.409 6 H 0.121 0.879 7 C -0.112 4.112 8 C -0.111 4.111 9 C -0.132 4.132 10 C 0.174 3.826 11 H 0.091 0.909 12 N -0.745 5.745 13 C 0.699 3.301 14 O -0.595 6.595 15 N -0.739 5.739 16 C 0.161 3.839 17 C 0.029 3.971 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.512 4.512 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.891 5.891 24 Si 0.886 3.114 25 H -0.287 1.287 26 H -0.306 1.306 27 H -0.249 1.249 28 C -0.103 4.103 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.390 0.610 41 H 0.391 0.609 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.052 0.948 48 H 0.040 0.960 49 H 0.028 0.972 50 H 0.264 0.736 51 H 0.081 0.919 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.097 -2.575 -10.986 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.591 4.591 3 S 1.440 4.560 4 O -0.838 6.838 5 C -0.526 4.526 6 H 0.139 0.861 7 C -0.150 4.150 8 C -0.150 4.150 9 C -0.171 4.171 10 C 0.067 3.933 11 H 0.109 0.891 12 N -0.402 5.402 13 C 0.399 3.601 14 O -0.474 6.474 15 N -0.393 5.393 16 C 0.038 3.962 17 C 0.028 3.972 18 C -0.198 4.198 19 C -0.203 4.203 20 C -0.550 4.550 21 H 0.095 0.905 22 C -0.128 4.128 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.215 1.215 26 H -0.235 1.235 27 H -0.175 1.175 28 C -0.142 4.142 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.224 0.776 41 H 0.225 0.775 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.754 -1.088 -11.414 27.281 hybrid contribution -0.125 -2.755 -0.815 2.876 sum -24.879 -3.843 -12.230 27.988 Atomic orbital electron populations 1.21358 0.92170 1.03068 1.02617 1.27606 1.03767 1.20081 1.07596 1.70552 0.86052 0.87004 1.12369 1.93125 1.75910 1.63749 1.51059 1.27595 1.18806 1.01954 1.04282 0.86133 1.21610 0.97970 0.98470 0.97000 1.21429 0.93875 0.97516 1.02167 1.21944 1.01461 0.95715 0.98004 1.20594 0.92826 0.96965 0.82923 0.89055 1.45224 1.13063 1.55773 1.26175 1.16059 0.81993 0.80629 0.81468 1.90904 1.52726 1.43775 1.59945 1.45495 1.16802 1.53403 1.23640 1.21357 0.79296 1.00206 0.95359 1.18724 0.96770 0.90869 0.90885 1.22280 0.96256 1.00697 1.00553 1.22346 0.98594 0.99167 1.00194 1.20721 0.95507 1.30489 1.08290 0.90535 1.24976 0.95007 0.96848 0.95963 1.69952 1.24435 1.40481 1.17916 0.87285 0.81617 0.82863 0.76331 1.21451 1.23459 1.17519 1.21528 0.94750 0.94142 1.03809 0.91654 0.91387 0.92303 0.89518 0.86490 0.91848 0.91543 0.91495 0.92184 0.91505 0.90883 0.77563 0.77526 0.92316 0.92134 0.96008 0.92621 0.93390 0.92869 0.94126 0.95266 0.92573 0.90040 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 9.92 37.16 0.37 -0.29 16 2 C -0.45 -2.14 6.04 37.16 0.22 -1.92 16 3 S 1.24 6.72 12.67 -107.50 -1.36 5.36 16 4 O -0.84 -10.00 18.13 -35.23 -0.64 -10.64 16 5 C -0.41 -2.39 2.54 -26.73 -0.07 -2.46 16 6 H 0.12 0.44 6.51 -51.93 -0.34 0.10 16 7 C -0.11 -0.85 4.95 -26.73 -0.13 -0.98 16 8 C -0.11 -0.99 5.77 -26.73 -0.15 -1.14 16 9 C -0.13 -1.38 5.60 -26.73 -0.15 -1.53 16 10 C 0.17 1.77 2.78 -67.93 -0.19 1.58 16 11 H 0.09 1.12 7.57 -51.93 -0.39 0.73 16 12 N -0.75 -8.02 4.24 -58.68 -0.25 -8.26 16 13 C 0.70 10.97 8.53 -86.92 -0.74 10.23 16 14 O -0.60 -12.00 16.01 5.28 0.08 -11.91 16 15 N -0.74 -11.52 5.01 -65.22 -0.33 -11.85 16 16 C 0.16 3.17 4.49 -4.04 -0.02 3.15 16 17 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 18 C -0.14 -2.75 7.53 37.16 0.28 -2.47 16 19 C -0.15 -2.87 7.52 37.15 0.28 -2.59 16 20 C -0.51 -13.56 8.62 -34.44 -0.30 -13.85 16 21 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 22 C 0.07 2.05 5.32 -17.82 -0.09 1.95 16 23 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 24 Si 0.89 20.68 22.79 -169.99 -3.87 16.81 16 25 H -0.29 -6.69 7.10 56.52 0.40 -6.29 16 26 H -0.31 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.25 -5.22 4.65 56.52 0.26 -4.96 16 28 C -0.10 -0.77 4.88 -26.73 -0.13 -0.90 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.09 0.52 6.90 -51.92 -0.36 0.17 16 33 H 0.12 0.28 8.14 -51.92 -0.42 -0.14 16 34 H 0.06 0.41 6.51 -51.93 -0.34 0.07 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.61 7.60 -51.93 -0.39 0.22 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.39 3.01 6.88 -40.82 -0.28 2.73 16 41 H 0.39 5.10 6.27 -40.82 -0.26 4.84 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.02 0.34 7.13 -51.93 -0.37 -0.03 16 45 H 0.06 1.17 4.30 -51.93 -0.22 0.94 16 46 H 0.05 0.94 8.12 -51.93 -0.42 0.51 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.85 2.25 -51.92 -0.12 0.73 16 49 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -36.32 395.71 -9.57 -45.88 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -9.04 Total: 4.96 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.90 Total: -10.69 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.20 Total: -45.73 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.55 Total: -22.55 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -3.87 Total: 16.81 kcal Atomic # 16 Polarization: 6.72 SS G_CDS: -1.36 Total: 5.36 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.32 -9.57 -45.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458493803.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.412 kcal (2) G-P(sol) polarization free energy of solvation -36.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds