Wall clock time and date at job start Wed Apr 1 2020 03:26:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 S 1.81402 * 109.47256 * 2 1
4 4 O 1.42098 * 109.46734 * 296.38604 * 3 2 1
5 5 C 1.81402 * 102.99662 * 179.97438 * 3 2 1
6 6 H 1.08996 * 109.47281 * 294.99200 * 5 3 2
7 7 C 1.52995 * 109.47205 * 55.00428 * 5 3 2
8 8 C 1.53000 * 109.47022 * 179.97438 * 7 5 3
9 9 C 1.53002 * 109.46758 * 299.99312 * 8 7 5
10 10 C 1.53002 * 109.47159 * 60.00277 * 9 8 7
11 11 H 1.08996 * 109.47377 * 179.97438 * 10 9 8
12 12 N 1.46501 * 109.47065 * 59.99512 * 10 9 8
13 13 C 1.34785 * 119.99794 * 85.00204 * 12 10 9
14 14 O 1.21595 * 119.99805 * 359.97438 * 13 12 10
15 15 N 1.34764 * 120.00110 * 180.02562 * 13 12 10
16 16 C 1.46500 * 120.00175 * 180.27579 * 15 13 12
17 17 C 1.53006 * 109.47207 * 179.72453 * 16 15 13
18 18 C 1.53000 * 109.46847 * 299.99696 * 17 16 15
19 19 C 1.52993 * 109.47078 * 60.00069 * 17 16 15
20 20 C 1.50704 * 109.47105 * 180.02562 * 17 16 15
21 21 H 1.08001 * 120.00005 * 1.34662 * 20 17 16
22 22 C 1.37869 * 120.00155 * 181.34409 * 20 17 16
23 23 N 1.31511 * 120.00309 * 193.97598 * 22 20 17
24 24 Si 1.86799 * 119.99845 * 13.97762 * 22 20 17
25 25 H 1.48504 * 109.47349 * 84.54915 * 24 22 20
26 26 H 1.48500 * 109.47227 * 204.54700 * 24 22 20
27 27 H 1.48496 * 109.47179 * 324.54775 * 24 22 20
28 28 C 1.52997 * 109.46802 * 300.00010 * 10 9 8
29 29 H 1.09004 * 109.47181 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47380 * 300.00279 * 1 2 3
31 31 H 1.09007 * 109.47168 * 60.00256 * 1 2 3
32 32 H 1.09006 * 109.47095 * 239.99641 * 2 1 3
33 33 H 1.09000 * 109.46925 * 120.00017 * 2 1 3
34 34 H 1.09004 * 109.47030 * 299.98880 * 7 5 3
35 35 H 1.08996 * 109.48003 * 59.99214 * 7 5 3
36 36 H 1.08997 * 109.47728 * 59.99235 * 8 7 5
37 37 H 1.09007 * 109.47226 * 179.97438 * 8 7 5
38 38 H 1.08996 * 109.47650 * 300.00183 * 9 8 7
39 39 H 1.09004 * 109.47356 * 180.02562 * 9 8 7
40 40 H 0.96994 * 120.00336 * 265.00536 * 12 10 9
41 41 H 0.97006 * 120.00005 * 359.97438 * 15 13 12
42 42 H 1.08998 * 109.47324 * 299.72509 * 16 15 13
43 43 H 1.09006 * 109.47196 * 59.72612 * 16 15 13
44 44 H 1.08998 * 109.46938 * 69.37349 * 18 17 16
45 45 H 1.08999 * 109.46958 * 189.37019 * 18 17 16
46 46 H 1.08999 * 109.47477 * 309.36875 * 18 17 16
47 47 H 1.08994 * 109.47508 * 60.00355 * 19 17 16
48 48 H 1.09010 * 109.47052 * 179.97438 * 19 17 16
49 49 H 1.09001 * 109.47059 * 299.99509 * 19 17 16
50 50 H 0.97006 * 120.00387 * 180.02562 * 23 22 20
51 51 H 1.09006 * 109.46808 * 180.02562 * 28 10 9
52 52 H 1.09003 * 109.47163 * 299.99721 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1347 1.7103 0.0000
4 8 1.7312 2.3552 -1.2002
5 6 3.9371 1.5057 0.0008
6 1 4.2488 1.0334 0.9324
7 6 4.3511 0.6260 -1.1805
8 6 5.8714 0.4540 -1.1802
9 6 6.5396 1.8246 -1.3062
10 6 6.1257 2.7044 -0.1249
11 1 6.6021 3.6806 -0.2144
12 7 6.5451 2.0698 1.1271
13 6 7.7961 2.2581 1.5920
14 8 8.5767 2.9543 0.9720
15 7 8.1821 1.6739 2.7435
16 6 9.5400 1.8835 3.2519
17 6 9.7157 1.1208 4.5667
18 6 8.7024 1.6327 5.5925
19 6 9.4866 -0.3723 4.3246
20 6 11.1123 1.3369 5.0900
21 1 11.7983 1.9738 4.5513
22 6 11.5143 0.7217 6.2565
23 7 12.6149 1.1129 6.8608
24 14 10.4955 -0.6675 6.9787
25 1 10.8740 -1.9483 6.3293
26 1 10.7485 -0.7594 8.4392
27 1 9.0543 -0.3993 6.7420
28 6 4.6054 2.8762 -0.1252
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5138 -0.8901
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 3.8747 -0.3503 -1.0910
35 1 4.0394 1.0982 -2.1121
36 1 6.1835 -0.0181 -0.2487
37 1 6.1663 -0.1732 -2.0216
38 1 6.2276 2.2967 -2.2378
39 1 7.6228 1.7021 -1.3065
40 1 5.9225 1.5141 1.6215
41 1 7.5595 1.1182 3.2380
42 1 10.2619 1.5189 2.5212
43 1 9.7033 2.9474 3.4244
44 1 7.6988 1.3294 5.2943
45 1 8.9330 1.2129 6.5716
46 1 8.7536 2.7204 5.6423
47 1 10.2084 -0.7370 3.5939
48 1 9.6122 -0.9157 5.2612
49 1 8.4762 -0.5283 3.9464
50 1 12.8979 0.6798 7.6814
51 1 4.3105 3.5034 0.7161
52 1 4.2933 3.3484 -1.0568
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000458493803.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:26:44
Heat of formation + Delta-G solvation = -100.464194 kcal
Electronic energy + Delta-G solvation = -29237.573783 eV
Core-core repulsion = 25362.551890 eV
Total energy + Delta-G solvation = -3875.021894 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 344.192 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.36002 -39.53265 -38.20874 -36.72922 -34.98053 -34.61738 -33.60228 -33.27989
-31.89600 -30.65564 -27.95814 -27.37430 -26.74970 -24.78669 -23.75718 -23.25376
-22.35670 -20.91128 -20.18067 -19.63169 -18.34752 -17.99944 -17.22965 -17.06889
-16.89034 -16.51298 -16.16730 -15.84526 -15.52623 -15.48175 -15.33020 -15.22957
-14.86007 -14.61059 -14.33916 -14.01189 -13.95091 -13.90046 -13.69750 -13.47045
-13.36307 -13.24451 -13.11413 -12.88727 -12.74463 -12.34829 -12.29925 -12.09009
-12.07851 -11.90015 -11.86095 -11.70532 -11.57588 -11.36540 -11.23991 -10.99582
-10.62347 -10.57696 -10.33969 -10.21833 -9.62524 -9.05877 -8.26072 -6.27972
0.66569 1.40084 1.42178 1.55607 1.77471 1.84256 2.29881 2.39136
2.91547 3.10226 3.46470 3.58813 3.68591 3.88771 4.10264 4.10467
4.14269 4.17858 4.23151 4.31617 4.40151 4.47949 4.49667 4.54049
4.60982 4.63210 4.76150 4.81021 4.89230 4.93499 4.93899 4.99977
5.00997 5.05511 5.08944 5.12340 5.12899 5.18818 5.25280 5.26278
5.28276 5.32460 5.51057 5.63966 5.67525 5.78820 5.87097 6.18137
6.35827 6.76798 7.28969 7.36991 7.74883 8.91331
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.016830 B = 0.002417 C = 0.002243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.298026 B =11580.032579 C =12482.320829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.451 4.451
3 S 1.291 4.709
4 O -0.912 6.912
5 C -0.408 4.408
6 H 0.157 0.843
7 C -0.111 4.111
8 C -0.107 4.107
9 C -0.133 4.133
10 C 0.175 3.825
11 H 0.066 0.934
12 N -0.718 5.718
13 C 0.698 3.302
14 O -0.644 6.644
15 N -0.724 5.724
16 C 0.178 3.822
17 C 0.029 3.971
18 C -0.139 4.139
19 C -0.146 4.146
20 C -0.518 4.518
21 H 0.023 0.977
22 C 0.013 3.987
23 N -0.949 5.949
24 Si 0.948 3.052
25 H -0.284 1.284
26 H -0.318 1.318
27 H -0.196 1.196
28 C -0.099 4.099
29 H 0.072 0.928
30 H 0.090 0.910
31 H 0.033 0.967
32 H 0.074 0.926
33 H 0.154 0.846
34 H 0.082 0.918
35 H 0.043 0.957
36 H 0.073 0.927
37 H 0.056 0.944
38 H 0.066 0.934
39 H 0.041 0.959
40 H 0.412 0.588
41 H 0.410 0.590
42 H 0.034 0.966
43 H 0.035 0.965
44 H 0.072 0.928
45 H 0.044 0.956
46 H 0.039 0.961
47 H 0.042 0.958
48 H 0.035 0.965
49 H 0.078 0.922
50 H 0.264 0.736
51 H 0.106 0.894
52 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.532 -5.136 -9.740 31.518
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.589 4.589
3 S 1.492 4.508
4 O -0.908 6.908
5 C -0.525 4.525
6 H 0.175 0.825
7 C -0.149 4.149
8 C -0.145 4.145
9 C -0.172 4.172
10 C 0.068 3.932
11 H 0.084 0.916
12 N -0.376 5.376
13 C 0.398 3.602
14 O -0.526 6.526
15 N -0.380 5.380
16 C 0.053 3.947
17 C 0.028 3.972
18 C -0.196 4.196
19 C -0.202 4.202
20 C -0.556 4.556
21 H 0.042 0.958
22 C -0.184 4.184
23 N -0.589 5.589
24 Si 0.777 3.223
25 H -0.211 1.211
26 H -0.247 1.247
27 H -0.120 1.120
28 C -0.138 4.138
29 H 0.091 0.909
30 H 0.109 0.891
31 H 0.052 0.948
32 H 0.093 0.907
33 H 0.172 0.828
34 H 0.100 0.900
35 H 0.062 0.938
36 H 0.092 0.908
37 H 0.075 0.925
38 H 0.085 0.915
39 H 0.060 0.940
40 H 0.250 0.750
41 H 0.247 0.753
42 H 0.052 0.948
43 H 0.053 0.947
44 H 0.091 0.909
45 H 0.063 0.937
46 H 0.058 0.942
47 H 0.061 0.939
48 H 0.053 0.947
49 H 0.097 0.903
50 H 0.072 0.928
51 H 0.124 0.876
52 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -29.282 -3.658 -10.195 31.221
hybrid contribution 1.327 -1.894 -1.322 2.664
sum -27.955 -5.551 -11.517 30.740
Atomic orbital electron populations
1.21460 0.92447 1.03580 1.02619 1.27601 1.03613 1.18873 1.08819
1.69790 0.84574 0.86741 1.09693 1.93020 1.77477 1.66892 1.53408
1.27657 1.18915 1.00773 1.05187 0.82504 1.21599 0.96850 0.99618
0.96850 1.21393 0.94724 0.96009 1.02397 1.21908 0.99649 0.97245
0.98355 1.20594 0.94701 0.95571 0.82334 0.91606 1.44924 1.11484
1.55165 1.26029 1.16197 0.82922 0.80049 0.81067 1.90890 1.54619
1.45863 1.61260 1.45042 1.15372 1.53803 1.23828 1.20823 0.81162
0.98310 0.94379 1.18650 0.94025 0.92878 0.91686 1.22199 0.98119
1.00253 0.99065 1.22279 1.01376 0.96679 0.99884 1.21059 0.97775
1.28974 1.07813 0.95828 1.25924 0.96377 0.99588 0.96554 1.70129
1.27295 1.42564 1.18871 0.86302 0.82895 0.78723 0.74409 1.21140
1.24741 1.11957 1.21477 0.92255 0.95694 1.04359 0.90921 0.89091
0.94758 0.90704 0.82845 0.89967 0.93783 0.90821 0.92476 0.91538
0.94017 0.74976 0.75275 0.94789 0.94695 0.90932 0.93721 0.94221
0.93923 0.94702 0.90297 0.92769 0.87551 0.91198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.00 9.92 71.98 0.71 -0.28 16
2 C -0.45 -2.45 6.04 71.98 0.43 -2.01 16
3 S 1.29 9.95 12.67 -56.49 -0.72 9.23 16
4 O -0.91 -20.76 18.13 -148.98 -2.70 -23.46 16
5 C -0.41 -3.17 2.54 30.59 0.08 -3.10 16
6 H 0.16 0.10 6.51 -2.39 -0.02 0.08 16
7 C -0.11 -1.37 4.95 30.59 0.15 -1.22 16
8 C -0.11 -1.66 5.77 30.59 0.18 -1.48 16
9 C -0.13 -2.72 5.60 30.60 0.17 -2.55 16
10 C 0.17 3.30 2.78 44.99 0.13 3.43 16
11 H 0.07 1.62 7.57 -2.39 -0.02 1.61 16
12 N -0.72 -13.15 4.24 -457.81 -1.94 -15.09 16
13 C 0.70 20.61 8.53 179.06 1.53 22.14 16
14 O -0.64 -26.27 16.01 -4.02 -0.06 -26.34 16
15 N -0.72 -20.35 5.01 -478.52 -2.40 -22.74 16
16 C 0.18 6.94 4.49 86.38 0.39 7.33 16
17 C 0.03 1.17 0.50 -52.93 -0.03 1.14 16
18 C -0.14 -4.89 7.53 71.98 0.54 -4.35 16
19 C -0.15 -5.10 7.52 71.98 0.54 -4.56 16
20 C -0.52 -28.22 8.62 25.60 0.22 -28.00 16
21 H 0.02 1.48 7.99 -2.91 -0.02 1.45 16
22 C 0.01 0.70 5.32 84.65 0.45 1.15 16
23 N -0.95 -58.62 13.96 21.44 0.30 -58.32 16
24 Si 0.95 41.39 22.79 68.60 1.56 42.95 16
25 H -0.28 -12.22 7.10 99.48 0.71 -11.51 16
26 H -0.32 -14.44 7.11 99.48 0.71 -13.73 16
27 H -0.20 -6.95 4.65 99.48 0.46 -6.48 16
28 C -0.10 -1.21 4.88 30.59 0.15 -1.07 16
29 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16
30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16
31 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16
32 H 0.07 0.65 6.90 -2.39 -0.02 0.64 16
33 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16
34 H 0.08 0.74 6.51 -2.39 -0.02 0.73 16
35 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16
36 H 0.07 1.06 7.60 -2.39 -0.02 1.04 16
37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16
38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
40 H 0.41 4.02 6.88 -92.71 -0.64 3.38 16
41 H 0.41 8.26 6.27 -92.70 -0.58 7.68 16
42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16
43 H 0.03 1.52 8.14 -2.38 -0.02 1.51 16
44 H 0.07 1.82 7.13 -2.39 -0.02 1.81 16
45 H 0.04 1.67 4.30 -2.39 -0.01 1.66 16
46 H 0.04 1.45 8.12 -2.39 -0.02 1.43 16
47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
48 H 0.03 1.28 2.25 -2.38 -0.01 1.27 16
49 H 0.08 1.98 6.86 -2.39 -0.02 1.97 16
50 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16
51 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16
52 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16
Total: -1.00 -87.57 395.71 -0.85 -88.43
By element:
Atomic # 1 Polarization: 19.29 SS G_CDS: -0.54 Total: 18.74 kcal
Atomic # 6 Polarization: -19.06 SS G_CDS: 5.64 Total: -13.41 kcal
Atomic # 7 Polarization: -92.11 SS G_CDS: -4.04 Total: -96.15 kcal
Atomic # 8 Polarization: -47.03 SS G_CDS: -2.76 Total: -49.79 kcal
Atomic # 14 Polarization: 41.39 SS G_CDS: 1.56 Total: 42.95 kcal
Atomic # 16 Polarization: 9.95 SS G_CDS: -0.72 Total: 9.23 kcal
Total: -87.57 -0.85 -88.43 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000458493803.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.038 kcal
(2) G-P(sol) polarization free energy of solvation -87.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.612 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds