Wall clock time and date at job start Wed Apr 1 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81401 * 109.47128 * 2 1 4 4 O 1.42108 * 109.46913 * 296.39173 * 3 2 1 5 5 C 1.81401 * 102.99960 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47220 * 64.99999 * 5 3 2 7 7 C 1.52997 * 109.46983 * 304.99911 * 5 3 2 8 8 C 1.53003 * 109.47435 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46658 * 60.00008 * 8 7 5 10 10 C 1.52997 * 109.47191 * 300.00142 * 9 8 7 11 11 H 1.08995 * 109.47096 * 180.02562 * 10 9 8 12 12 N 1.46507 * 109.47408 * 300.00221 * 10 9 8 13 13 C 1.34775 * 119.99876 * 275.00414 * 12 10 9 14 14 O 1.21583 * 120.00144 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99585 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99665 * 179.72218 * 15 13 12 17 17 C 1.53004 * 109.47198 * 180.27868 * 16 15 13 18 18 C 1.52998 * 109.46876 * 299.99984 * 17 16 15 19 19 C 1.53005 * 109.46795 * 60.00011 * 17 16 15 20 20 C 1.50700 * 109.47208 * 180.02562 * 17 16 15 21 21 H 1.08002 * 119.99770 * 359.97438 * 20 17 16 22 22 C 1.37876 * 119.99720 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00513 * 0.02562 * 22 20 17 24 24 Si 1.86809 * 119.99651 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47265 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46830 * 120.00397 * 24 22 20 27 27 H 1.48503 * 109.47108 * 240.00004 * 24 22 20 28 28 C 1.52998 * 109.46977 * 185.00371 * 5 3 2 29 29 H 1.09002 * 109.46813 * 299.99856 * 1 2 3 30 30 H 1.08996 * 109.47337 * 59.99507 * 1 2 3 31 31 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46651 * 240.00673 * 2 1 3 33 33 H 1.08996 * 109.47337 * 120.00493 * 2 1 3 34 34 H 1.09009 * 109.47238 * 60.00242 * 7 5 3 35 35 H 1.09003 * 109.47713 * 300.00410 * 7 5 3 36 36 H 1.08999 * 109.46443 * 299.99935 * 8 7 5 37 37 H 1.08997 * 109.47244 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.46681 * 180.02562 * 9 8 7 39 39 H 1.08994 * 109.47376 * 60.00452 * 9 8 7 40 40 H 0.97000 * 119.99601 * 94.99753 * 12 10 9 41 41 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 42 42 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 43 43 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 44 44 H 1.08996 * 109.47009 * 60.00253 * 18 17 16 45 45 H 1.09004 * 109.46783 * 179.97438 * 18 17 16 46 46 H 1.08998 * 109.47156 * 300.00070 * 18 17 16 47 47 H 1.09000 * 109.47011 * 60.00556 * 19 17 16 48 48 H 1.09004 * 109.46658 * 180.02562 * 19 17 16 49 49 H 1.08996 * 109.47069 * 299.99740 * 19 17 16 50 50 H 0.96999 * 120.00239 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.47241 * 59.99609 * 28 5 3 52 52 H 1.09000 * 109.46848 * 299.99683 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7311 2.3553 -1.2002 5 6 3.9372 1.5058 -0.0008 6 1 4.2488 1.0335 -0.9323 7 6 4.3511 0.6261 1.1805 8 6 5.8715 0.4541 1.1803 9 6 6.5397 1.8247 1.3063 10 6 6.1257 2.7044 0.1250 11 1 6.6021 3.6807 0.2145 12 7 6.5452 2.0699 -1.1271 13 6 7.7962 2.2582 -1.5919 14 8 8.5765 2.9550 -0.9723 15 7 8.1822 1.6740 -2.7435 16 6 9.5400 1.8835 -3.2519 17 6 9.7158 1.1210 -4.5667 18 6 9.4866 -0.3722 -4.3247 19 6 8.7024 1.6330 -5.5924 20 6 11.1128 1.3361 -5.0893 21 1 11.8058 1.9551 -4.5389 22 6 11.5060 0.7426 -6.2700 23 7 10.6619 -0.0108 -6.9405 24 14 13.2375 1.0098 -6.9182 25 1 13.9846 1.8915 -5.9858 26 1 13.9328 -0.2979 -7.0263 27 1 13.1717 1.6476 -8.2577 28 6 4.6059 2.8761 0.1249 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8747 -0.3503 1.0910 35 1 4.0394 1.0983 2.1122 36 1 6.1834 -0.0181 0.2488 37 1 6.1663 -0.1730 2.0217 38 1 7.6228 1.7022 1.3057 39 1 6.2276 2.2968 2.2378 40 1 5.9226 1.5142 -1.6215 41 1 7.5596 1.1183 -3.2380 42 1 9.7034 2.9474 -3.4243 43 1 10.2620 1.5189 -2.5212 44 1 8.4763 -0.5281 -3.9465 45 1 9.6113 -0.9154 -5.2615 46 1 10.2084 -0.7369 -3.5939 47 1 8.8658 2.6968 -5.7648 48 1 8.8273 1.0894 -6.5290 49 1 7.6922 1.4770 -5.2142 50 1 10.9387 -0.4286 -7.7709 51 1 4.2942 3.3485 1.0565 52 1 4.3110 3.5029 -0.7167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458493815.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:51 Heat of formation + Delta-G solvation = -92.631332 kcal Electronic energy + Delta-G solvation = -29146.836698 eV Core-core repulsion = 25272.154463 eV Total energy + Delta-G solvation = -3874.682235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.14460 -38.31989 -36.30625 -36.00046 -33.63327 -33.24809 -33.05149 -31.16422 -30.92867 -29.50727 -25.71149 -25.55552 -24.78681 -24.27020 -22.95983 -22.55565 -21.10483 -19.36897 -18.70215 -18.36077 -17.64230 -16.44071 -16.03886 -15.79392 -15.41813 -15.35263 -15.08213 -14.87228 -14.68961 -14.28787 -14.22590 -13.78990 -13.52513 -13.21436 -12.90171 -12.86629 -12.75844 -12.61199 -12.40968 -12.26230 -12.21925 -12.14199 -11.82130 -11.57243 -11.38004 -11.19249 -11.07417 -10.87569 -10.82869 -10.64723 -10.56739 -10.36453 -10.19639 -9.92297 -9.73082 -9.61546 -9.28834 -8.92342 -8.76720 -8.52771 -8.40455 -8.16000 -6.00988 -4.10791 1.12316 2.23733 3.13674 3.27910 3.36459 3.41663 3.43686 3.68302 4.26815 4.33431 4.39778 4.49606 4.59523 4.64627 4.75812 4.87314 4.96348 4.97969 5.10236 5.14489 5.25836 5.28334 5.35842 5.37067 5.47558 5.58850 5.63804 5.64953 5.67075 5.91122 5.98274 6.11075 6.16850 6.24747 6.38854 6.52491 6.75154 6.82041 6.84212 6.93256 7.04765 7.13009 7.33385 7.44772 7.57319 7.71203 8.02308 8.14119 8.39871 8.52006 8.89560 9.09253 9.54948 11.00528 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002287 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.566612 B =12237.817062 C =12984.641615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.453 4.453 3 S 1.237 4.763 4 O -0.845 6.845 5 C -0.410 4.410 6 H 0.090 0.910 7 C -0.093 4.093 8 C -0.115 4.115 9 C -0.131 4.131 10 C 0.172 3.828 11 H 0.091 0.909 12 N -0.747 5.747 13 C 0.698 3.302 14 O -0.600 6.600 15 N -0.735 5.735 16 C 0.151 3.849 17 C 0.056 3.944 18 C -0.129 4.129 19 C -0.130 4.130 20 C -0.503 4.503 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.102 4.102 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.389 0.611 41 H 0.392 0.608 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.004 0.996 45 H 0.085 0.915 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.085 0.915 49 H 0.004 0.996 50 H 0.259 0.741 51 H 0.090 0.910 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.471 -0.715 20.390 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.590 4.590 3 S 1.437 4.563 4 O -0.841 6.841 5 C -0.527 4.527 6 H 0.108 0.892 7 C -0.131 4.131 8 C -0.153 4.153 9 C -0.170 4.170 10 C 0.065 3.935 11 H 0.109 0.891 12 N -0.404 5.404 13 C 0.398 3.602 14 O -0.479 6.479 15 N -0.389 5.389 16 C 0.028 3.972 17 C 0.055 3.945 18 C -0.187 4.187 19 C -0.188 4.188 20 C -0.542 4.542 21 H 0.077 0.923 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.141 4.141 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.223 0.777 41 H 0.226 0.774 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.023 0.977 45 H 0.103 0.897 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.103 0.897 49 H 0.023 0.977 50 H 0.069 0.931 51 H 0.109 0.891 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.277 0.673 20.730 29.005 hybrid contribution 1.157 -1.751 -2.857 3.546 sum -19.119 -1.078 17.872 26.194 Atomic orbital electron populations 1.21359 0.92147 1.03078 1.02620 1.27609 1.03790 1.20032 1.07592 1.70442 0.86195 0.87131 1.12515 1.93149 1.75912 1.63806 1.51203 1.27521 1.18621 1.02301 1.04274 0.89170 1.21303 0.97235 0.98318 0.96244 1.21468 0.94112 0.97524 1.02241 1.21944 1.01510 0.95686 0.97832 1.20619 0.92736 0.97046 0.83123 0.89133 1.45268 1.13102 1.55803 1.26267 1.16087 0.81922 0.80634 0.81576 1.90868 1.52822 1.44013 1.60172 1.45525 1.16911 1.53088 1.23361 1.21563 0.79113 0.99937 0.96580 1.18366 0.95734 0.91604 0.88792 1.21814 0.95431 0.99411 1.02030 1.21821 0.94508 0.99558 1.02882 1.21027 0.96423 1.30053 1.06686 0.92338 1.24891 0.97285 0.94898 0.96537 1.69817 1.34381 1.32340 1.16013 0.86512 0.84658 0.77917 0.78785 1.19726 1.21089 1.21076 1.21502 0.94865 0.94028 1.03678 0.91417 0.92265 0.91616 0.89687 0.86336 0.91478 0.90202 0.91909 0.91704 0.91038 0.91028 0.77700 0.77382 0.93023 0.93000 0.97694 0.89667 0.95454 0.95431 0.89660 0.97658 0.93100 0.89143 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 9.92 37.16 0.37 -0.36 16 2 C -0.45 -2.45 6.04 37.16 0.22 -2.23 16 3 S 1.24 7.75 12.67 -107.50 -1.36 6.38 16 4 O -0.85 -11.37 18.14 -35.23 -0.64 -12.01 16 5 C -0.41 -2.78 2.54 -26.73 -0.07 -2.85 16 6 H 0.09 0.77 6.51 -51.93 -0.34 0.43 16 7 C -0.09 -0.46 4.95 -26.73 -0.13 -0.59 16 8 C -0.11 -0.90 5.77 -26.73 -0.15 -1.05 16 9 C -0.13 -1.24 5.60 -26.73 -0.15 -1.39 16 10 C 0.17 1.87 2.78 -67.95 -0.19 1.68 16 11 H 0.09 1.16 7.57 -51.93 -0.39 0.76 16 12 N -0.75 -10.01 4.24 -58.70 -0.25 -10.26 16 13 C 0.70 12.66 8.53 -86.92 -0.74 11.92 16 14 O -0.60 -13.03 16.00 5.29 0.08 -12.94 16 15 N -0.73 -13.75 4.96 -65.22 -0.32 -14.07 16 16 C 0.15 3.34 4.50 -4.04 -0.02 3.32 16 17 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 18 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 19 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 20 C -0.50 -13.43 8.01 -34.44 -0.28 -13.71 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.74 5.15 -17.82 -0.09 1.64 16 23 N -0.89 -24.05 9.35 55.43 0.52 -23.53 16 24 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.10 -0.80 4.89 -26.76 -0.13 -0.93 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.12 0.32 6.90 -51.93 -0.36 -0.04 16 34 H 0.07 0.25 6.51 -51.92 -0.34 -0.09 16 35 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.39 4.61 6.88 -40.82 -0.28 4.33 16 41 H 0.39 6.73 6.18 -40.82 -0.25 6.48 16 42 H 0.05 1.21 8.14 -51.92 -0.42 0.78 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 45 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 49 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 50 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 405.63 15.07 6.11 6.11 Total: -1.00 -35.34 405.63 -10.87 -46.22 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -9.16 Total: 6.80 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.84 Total: -8.71 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.05 Total: -47.86 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.55 Total: -24.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 7.75 SS G_CDS: -1.36 Total: 6.38 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.34 -10.87 -46.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458493815.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.413 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds