Wall clock time and date at job start Wed Apr 1 2020 03:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81401 * 109.47128 * 2 1 4 4 O 1.42108 * 109.46913 * 296.39173 * 3 2 1 5 5 C 1.81401 * 102.99960 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47220 * 64.99999 * 5 3 2 7 7 C 1.52997 * 109.46983 * 304.99911 * 5 3 2 8 8 C 1.53003 * 109.47435 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46658 * 60.00008 * 8 7 5 10 10 C 1.52997 * 109.47191 * 300.00142 * 9 8 7 11 11 H 1.08995 * 109.47096 * 180.02562 * 10 9 8 12 12 N 1.46507 * 109.47408 * 300.00221 * 10 9 8 13 13 C 1.34775 * 119.99876 * 275.00414 * 12 10 9 14 14 O 1.21583 * 120.00144 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99585 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99665 * 179.72218 * 15 13 12 17 17 C 1.53004 * 109.47198 * 180.27868 * 16 15 13 18 18 C 1.52998 * 109.46876 * 299.99984 * 17 16 15 19 19 C 1.53005 * 109.46795 * 60.00011 * 17 16 15 20 20 C 1.50700 * 109.47208 * 180.02562 * 17 16 15 21 21 H 1.08002 * 119.99770 * 359.97438 * 20 17 16 22 22 C 1.37876 * 119.99720 * 179.97438 * 20 17 16 23 23 N 1.31514 * 120.00513 * 0.02562 * 22 20 17 24 24 Si 1.86809 * 119.99651 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47265 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46830 * 120.00397 * 24 22 20 27 27 H 1.48503 * 109.47108 * 240.00004 * 24 22 20 28 28 C 1.52998 * 109.46977 * 185.00371 * 5 3 2 29 29 H 1.09002 * 109.46813 * 299.99856 * 1 2 3 30 30 H 1.08996 * 109.47337 * 59.99507 * 1 2 3 31 31 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46651 * 240.00673 * 2 1 3 33 33 H 1.08996 * 109.47337 * 120.00493 * 2 1 3 34 34 H 1.09009 * 109.47238 * 60.00242 * 7 5 3 35 35 H 1.09003 * 109.47713 * 300.00410 * 7 5 3 36 36 H 1.08999 * 109.46443 * 299.99935 * 8 7 5 37 37 H 1.08997 * 109.47244 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.46681 * 180.02562 * 9 8 7 39 39 H 1.08994 * 109.47376 * 60.00452 * 9 8 7 40 40 H 0.97000 * 119.99601 * 94.99753 * 12 10 9 41 41 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 42 42 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 43 43 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 44 44 H 1.08996 * 109.47009 * 60.00253 * 18 17 16 45 45 H 1.09004 * 109.46783 * 179.97438 * 18 17 16 46 46 H 1.08998 * 109.47156 * 300.00070 * 18 17 16 47 47 H 1.09000 * 109.47011 * 60.00556 * 19 17 16 48 48 H 1.09004 * 109.46658 * 180.02562 * 19 17 16 49 49 H 1.08996 * 109.47069 * 299.99740 * 19 17 16 50 50 H 0.96999 * 120.00239 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.47241 * 59.99609 * 28 5 3 52 52 H 1.09000 * 109.46848 * 299.99683 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7311 2.3553 -1.2002 5 6 3.9372 1.5058 -0.0008 6 1 4.2488 1.0335 -0.9323 7 6 4.3511 0.6261 1.1805 8 6 5.8715 0.4541 1.1803 9 6 6.5397 1.8247 1.3063 10 6 6.1257 2.7044 0.1250 11 1 6.6021 3.6807 0.2145 12 7 6.5452 2.0699 -1.1271 13 6 7.7962 2.2582 -1.5919 14 8 8.5765 2.9550 -0.9723 15 7 8.1822 1.6740 -2.7435 16 6 9.5400 1.8835 -3.2519 17 6 9.7158 1.1210 -4.5667 18 6 9.4866 -0.3722 -4.3247 19 6 8.7024 1.6330 -5.5924 20 6 11.1128 1.3361 -5.0893 21 1 11.8058 1.9551 -4.5389 22 6 11.5060 0.7426 -6.2700 23 7 10.6619 -0.0108 -6.9405 24 14 13.2375 1.0098 -6.9182 25 1 13.9846 1.8915 -5.9858 26 1 13.9328 -0.2979 -7.0263 27 1 13.1717 1.6476 -8.2577 28 6 4.6059 2.8761 0.1249 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8747 -0.3503 1.0910 35 1 4.0394 1.0983 2.1122 36 1 6.1834 -0.0181 0.2488 37 1 6.1663 -0.1730 2.0217 38 1 7.6228 1.7022 1.3057 39 1 6.2276 2.2968 2.2378 40 1 5.9226 1.5142 -1.6215 41 1 7.5596 1.1183 -3.2380 42 1 9.7034 2.9474 -3.4243 43 1 10.2620 1.5189 -2.5212 44 1 8.4763 -0.5281 -3.9465 45 1 9.6113 -0.9154 -5.2615 46 1 10.2084 -0.7369 -3.5939 47 1 8.8658 2.6968 -5.7648 48 1 8.8273 1.0894 -6.5290 49 1 7.6922 1.4770 -5.2142 50 1 10.9387 -0.4286 -7.7709 51 1 4.2942 3.3485 1.0565 52 1 4.3110 3.5029 -0.7167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458493815.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:50 Heat of formation + Delta-G solvation = -117.264784 kcal Electronic energy + Delta-G solvation = -29147.904885 eV Core-core repulsion = 25272.154463 eV Total energy + Delta-G solvation = -3875.750422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38065 -39.43697 -38.04719 -36.82173 -35.04708 -34.60659 -33.60953 -32.70405 -31.80795 -30.48704 -27.63102 -27.48533 -26.59786 -24.77827 -23.66947 -23.16561 -22.41729 -20.68181 -20.17496 -19.71925 -18.28230 -17.82611 -17.23903 -17.03282 -16.60422 -16.52678 -16.12832 -15.86063 -15.55793 -15.42636 -15.26691 -15.13895 -14.74576 -14.60401 -14.29909 -14.06653 -13.72691 -13.47420 -13.34561 -13.23171 -13.15479 -13.08267 -12.91733 -12.74774 -12.69568 -12.59364 -12.44445 -12.30773 -12.17236 -12.03981 -11.77127 -11.54331 -11.39370 -11.38432 -11.24363 -11.16137 -10.74722 -10.59081 -10.44399 -10.24229 -9.67264 -9.14041 -8.05765 -6.21695 0.60118 1.39207 1.42857 1.52848 1.73910 1.83368 2.19911 2.43654 2.87061 3.17835 3.38088 3.66246 3.76219 3.94525 4.06449 4.19354 4.25897 4.28812 4.36992 4.45277 4.48876 4.54308 4.58717 4.64394 4.68978 4.75386 4.89538 4.94367 4.97105 4.98841 5.04223 5.05181 5.10246 5.13796 5.17643 5.23960 5.27033 5.33001 5.36001 5.42170 5.50899 5.58040 5.60896 5.63506 5.70633 6.03691 6.08437 6.16624 6.39340 6.82628 7.10989 7.46181 7.62521 8.93690 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002287 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.566612 B =12237.817062 C =12984.641615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.450 4.450 3 S 1.293 4.707 4 O -0.923 6.923 5 C -0.408 4.408 6 H 0.069 0.931 7 C -0.089 4.089 8 C -0.114 4.114 9 C -0.126 4.126 10 C 0.163 3.837 11 H 0.067 0.933 12 N -0.731 5.731 13 C 0.696 3.304 14 O -0.638 6.638 15 N -0.731 5.731 16 C 0.169 3.831 17 C 0.052 3.948 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.526 4.526 21 H 0.045 0.955 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 0.948 3.052 25 H -0.274 1.274 26 H -0.280 1.280 27 H -0.281 1.281 28 C -0.098 4.098 29 H 0.095 0.905 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.105 0.895 40 H 0.399 0.601 41 H 0.401 0.599 42 H 0.033 0.967 43 H 0.036 0.964 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.063 0.937 49 H 0.030 0.970 50 H 0.260 0.740 51 H 0.132 0.868 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.406 -1.767 22.911 32.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.588 4.588 3 S 1.495 4.505 4 O -0.918 6.918 5 C -0.526 4.526 6 H 0.088 0.912 7 C -0.127 4.127 8 C -0.153 4.153 9 C -0.165 4.165 10 C 0.057 3.943 11 H 0.085 0.915 12 N -0.387 5.387 13 C 0.396 3.604 14 O -0.520 6.520 15 N -0.386 5.386 16 C 0.045 3.955 17 C 0.052 3.948 18 C -0.176 4.176 19 C -0.178 4.178 20 C -0.565 4.565 21 H 0.064 0.936 22 C -0.173 4.173 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.199 1.199 26 H -0.206 1.206 27 H -0.207 1.207 28 C -0.137 4.137 29 H 0.114 0.886 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.123 0.877 40 H 0.234 0.766 41 H 0.237 0.763 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.082 0.918 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.082 0.918 49 H 0.049 0.951 50 H 0.070 0.930 51 H 0.151 0.849 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.267 -0.382 23.255 32.198 hybrid contribution 1.728 -1.469 -3.577 4.236 sum -20.539 -1.852 19.678 28.504 Atomic orbital electron populations 1.21474 0.92156 1.03730 1.02735 1.27615 1.03873 1.18656 1.08691 1.69489 0.84557 0.86818 1.09599 1.93025 1.77663 1.67293 1.53854 1.27525 1.18650 1.01875 1.04578 0.91242 1.21415 0.94955 0.99424 0.96926 1.21468 0.96171 0.96139 1.01510 1.21911 0.99297 0.96892 0.98395 1.20900 0.94807 0.96131 0.82456 0.91457 1.45246 1.11349 1.55140 1.26982 1.16231 0.82991 0.80146 0.81077 1.90838 1.54354 1.45661 1.61134 1.45266 1.15861 1.53607 1.23875 1.21102 0.80606 0.98339 0.95502 1.18354 0.94700 0.92332 0.89442 1.21646 0.96883 0.98343 1.00724 1.21668 0.95846 0.98458 1.01791 1.21282 0.97760 1.30278 1.07184 0.93621 1.25491 1.00354 0.94767 0.96716 1.69919 1.35488 1.32488 1.16096 0.85658 0.80991 0.77817 0.78065 1.19907 1.20564 1.20732 1.21521 0.92287 0.94810 1.05046 0.88582 0.95018 0.90732 0.91463 0.82373 0.89334 0.86066 0.94527 0.90290 0.94919 0.87682 0.76567 0.76317 0.94860 0.94548 0.94937 0.91833 0.96136 0.96366 0.91781 0.95068 0.93015 0.84946 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.92 71.98 0.71 -0.49 16 2 C -0.45 -3.42 6.04 71.98 0.43 -2.99 16 3 S 1.29 13.12 12.67 -56.49 -0.72 12.40 16 4 O -0.92 -24.67 18.14 -148.98 -2.70 -27.37 16 5 C -0.41 -4.47 2.54 30.59 0.08 -4.39 16 6 H 0.07 1.08 6.51 -2.39 -0.02 1.06 16 7 C -0.09 -0.47 4.95 30.59 0.15 -0.32 16 8 C -0.11 -1.46 5.77 30.60 0.18 -1.28 16 9 C -0.13 -2.18 5.60 30.59 0.17 -2.01 16 10 C 0.16 3.42 2.78 44.97 0.13 3.55 16 11 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 12 N -0.73 -19.61 4.24 -457.90 -1.94 -21.55 16 13 C 0.70 25.76 8.53 179.05 1.53 27.29 16 14 O -0.64 -28.68 16.00 -3.98 -0.06 -28.75 16 15 N -0.73 -27.63 4.96 -478.53 -2.37 -30.01 16 16 C 0.17 7.67 4.50 86.38 0.39 8.06 16 17 C 0.05 2.53 0.50 -52.93 -0.03 2.51 16 18 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 19 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 20 C -0.53 -28.69 8.01 25.60 0.21 -28.48 16 21 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 22 C 0.03 1.42 5.15 84.65 0.44 1.85 16 23 N -0.90 -49.22 9.35 21.45 0.20 -49.02 16 24 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 C -0.10 -1.35 4.89 30.58 0.15 -1.20 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.16 -0.03 6.90 -2.39 -0.02 -0.05 16 34 H 0.09 0.17 6.51 -2.38 -0.02 0.15 16 35 H 0.12 -0.26 8.14 -2.39 -0.02 -0.27 16 36 H 0.04 0.66 7.60 -2.39 -0.02 0.64 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.40 9.31 6.88 -92.71 -0.64 8.67 16 41 H 0.40 13.54 6.18 -92.71 -0.57 12.97 16 42 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 45 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 46 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 3.31 6.07 -2.38 -0.01 3.30 16 49 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 50 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 51 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -81.49 405.63 -0.18 -81.66 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.30 Total: 24.91 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.69 Total: -7.84 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.11 Total: -100.58 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -2.77 Total: -56.12 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 13.12 SS G_CDS: -0.72 Total: 12.40 kcal Total: -81.49 -0.18 -81.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458493815.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.601 kcal (2) G-P(sol) polarization free energy of solvation -81.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds