Wall clock time and date at job start Wed Apr 1 2020 03:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47053 * 186.75045 * 3 2 1 5 5 C 1.52998 * 109.47152 * 66.75589 * 3 2 1 6 6 N 1.46898 * 109.47092 * 306.75544 * 3 2 1 7 7 C 1.46901 * 110.99852 * 303.95289 * 6 3 2 8 8 C 1.46908 * 110.99883 * 180.02562 * 6 3 2 9 9 C 1.50697 * 109.46798 * 189.99905 * 8 6 3 10 10 O 1.21287 * 120.00471 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99842 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99991 * 355.26480 * 11 9 8 13 13 C 1.50705 * 109.47047 * 89.99813 * 12 11 9 14 14 H 1.07999 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00034 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99925 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46759 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47323 * 120.00046 * 17 15 13 20 20 H 1.48497 * 109.47386 * 240.00451 * 17 15 13 21 21 C 1.40113 * 120.00030 * 175.26569 * 11 9 8 22 22 C 1.38843 * 120.01672 * 291.85431 * 21 11 9 23 23 C 1.38086 * 119.98465 * 179.72558 * 22 21 11 24 24 C 1.38720 * 120.01318 * 0.54671 * 23 22 21 25 25 O 1.35974 * 119.98110 * 179.70734 * 24 23 22 26 26 C 1.42896 * 117.00525 * 0.02562 * 25 24 23 27 27 C 1.52999 * 109.47576 * 180.02562 * 26 25 24 28 28 C 1.38716 * 120.03076 * 359.73092 * 24 23 22 29 29 C 1.38095 * 120.01710 * 359.97438 * 28 24 23 30 30 H 4.18740 * 15.03949 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47413 * 299.99726 * 5 3 2 32 32 H 1.08996 * 109.47336 * 59.99914 * 5 3 2 33 33 H 1.09002 * 109.47247 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47200 * 60.00157 * 7 6 3 35 35 H 1.09001 * 109.47011 * 180.02562 * 7 6 3 36 36 H 1.08999 * 109.47504 * 299.99757 * 7 6 3 37 37 H 1.08997 * 109.47044 * 309.99760 * 8 6 3 38 38 H 1.08996 * 109.47216 * 70.00069 * 8 6 3 39 39 H 1.08993 * 109.47779 * 210.00021 * 12 11 9 40 40 H 1.09000 * 109.47453 * 330.00391 * 12 11 9 41 41 H 0.97000 * 119.99691 * 180.02562 * 16 15 13 42 42 H 1.08008 * 120.00649 * 359.97403 * 22 21 11 43 43 H 1.08005 * 119.98966 * 180.27721 * 23 22 21 44 44 H 1.09002 * 109.46748 * 300.00433 * 26 25 24 45 45 H 1.09005 * 109.46839 * 59.99708 * 26 25 24 46 46 H 1.09003 * 109.46760 * 60.00013 * 27 26 25 47 47 H 1.08990 * 109.47112 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.46914 * 300.00578 * 27 26 25 49 49 H 1.08003 * 119.99304 * 179.97438 * 28 24 23 50 50 H 1.07997 * 120.00486 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0214 0.1208 5 6 3.1563 -0.5684 -1.3254 6 7 3.1360 -0.8279 1.1096 7 6 2.5891 -0.3665 2.3926 8 6 4.6046 -0.8502 1.1414 9 6 5.0699 -1.8926 2.1251 10 8 4.2582 -2.5518 2.7397 11 7 6.3882 -2.0918 2.3228 12 6 7.3684 -1.3697 1.5079 13 6 7.7207 -0.0685 2.1817 14 1 7.2608 0.1941 3.1229 15 6 8.6309 0.7863 1.5970 16 7 9.1913 0.4663 0.4511 17 14 9.0682 2.3988 2.4325 18 1 8.3064 2.5213 3.7013 19 1 10.5238 2.4260 2.7250 20 1 8.7223 3.5307 1.5356 21 6 6.8212 -2.9895 3.3076 22 6 6.6230 -2.6963 4.6502 23 6 7.0449 -3.5841 5.6200 24 6 7.6768 -4.7634 5.2536 25 8 8.0973 -5.6343 6.2094 26 6 7.8550 -5.2711 7.5700 27 6 8.3944 -6.3650 8.4937 28 6 7.8803 -5.0542 3.9126 29 6 7.4534 -4.1701 2.9414 30 1 -1.0499 -0.0010 -0.0006 31 1 2.7935 -1.5891 -1.4463 32 1 2.7927 0.0464 -2.1487 33 1 4.2463 -0.5675 -1.3256 34 1 1.5011 -0.4258 2.3661 35 1 2.9683 -0.9968 3.1969 36 1 2.8926 0.6658 2.5668 37 1 4.9859 -1.0912 0.1491 38 1 4.9764 0.1282 1.4457 39 1 8.2670 -1.9766 1.3976 40 1 6.9443 -1.1664 0.5246 41 1 9.8320 1.0675 0.0399 42 1 6.1353 -1.7758 4.9358 43 1 6.8867 -3.3582 6.6643 44 1 8.3583 -4.3296 7.7898 45 1 6.7829 -5.1559 7.7299 46 1 9.4665 -6.4797 8.3337 47 1 8.2092 -6.0882 9.5315 48 1 7.8915 -7.3067 8.2739 49 1 8.3727 -5.9724 3.6280 50 1 7.6123 -4.3966 1.8975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491804221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:19 Heat of formation + Delta-G solvation = 26.076124 kcal Electronic energy + Delta-G solvation = -30248.927426 eV Core-core repulsion = 26243.948781 eV Total energy + Delta-G solvation = -4004.978645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18902 -39.38755 -37.89789 -36.71551 -34.82281 -32.96100 -32.63870 -31.77785 -30.61758 -30.37124 -29.21327 -27.69063 -26.73177 -24.58809 -24.02019 -23.14003 -22.69802 -21.79240 -21.01329 -18.74929 -18.09194 -17.97124 -16.86878 -16.65026 -16.07477 -16.00392 -15.70475 -15.55067 -14.84515 -14.56790 -14.30457 -14.22569 -14.17719 -13.51027 -13.39861 -13.25787 -13.16562 -12.76775 -12.60704 -12.51602 -12.27517 -12.11540 -12.02909 -11.80051 -11.68741 -11.60043 -11.55672 -11.19149 -11.09603 -11.02136 -10.84344 -10.64670 -10.55891 -10.35193 -10.27571 -10.11753 -9.83673 -9.12852 -8.65613 -8.62085 -8.27498 -8.06063 -7.42461 -6.25670 -4.33226 1.70251 1.77664 2.75793 2.91577 3.16193 3.24911 3.26661 3.31290 3.32449 3.69797 4.12248 4.26438 4.33143 4.43780 4.83922 4.88263 5.07828 5.10698 5.19270 5.21777 5.22522 5.27550 5.36222 5.40538 5.59510 5.64620 5.66730 5.69642 5.73300 5.77912 5.86778 5.89579 5.94283 5.97231 6.03886 6.14848 6.23197 6.29348 6.35120 6.38903 6.63795 6.76387 6.88395 7.01242 7.07825 7.17433 7.24180 7.51509 7.66451 7.68158 7.75689 7.95678 8.18791 8.71019 8.96997 9.34743 10.80940 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007788 B = 0.003611 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.206137 B = 7752.420256 C =10211.265524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.186 3.814 4 H 0.064 0.936 5 C -0.145 4.145 6 N -0.519 5.519 7 C 0.020 3.980 8 C 0.038 3.962 9 C 0.525 3.475 10 O -0.542 6.542 11 N -0.561 5.561 12 C 0.238 3.762 13 C -0.538 4.538 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.144 3.856 22 C -0.067 4.067 23 C -0.198 4.198 24 C 0.112 3.888 25 O -0.320 6.320 26 C 0.054 3.946 27 C -0.151 4.151 28 C -0.142 4.142 29 C -0.084 4.084 30 H 0.216 0.784 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.020 0.980 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.266 0.734 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.129 0.871 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 -5.500 5.274 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.161 4.161 3 C 0.078 3.922 4 H 0.082 0.918 5 C -0.202 4.202 6 N -0.244 5.244 7 C -0.127 4.127 8 C -0.092 4.092 9 C 0.314 3.686 10 O -0.420 6.420 11 N -0.289 5.289 12 C 0.120 3.880 13 C -0.576 4.576 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.053 3.947 22 C -0.087 4.087 23 C -0.217 4.217 24 C 0.068 3.932 25 O -0.235 6.235 26 C -0.021 4.021 27 C -0.208 4.208 28 C -0.161 4.161 29 C -0.104 4.104 30 H 0.233 0.767 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.146 0.854 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.087 -6.417 5.325 10.944 hybrid contribution 0.493 2.165 0.637 2.310 sum -6.594 -4.252 5.962 9.854 Atomic orbital electron populations 1.24784 0.95719 1.01539 1.00826 1.22772 0.93882 0.99550 0.99857 1.18598 0.84619 0.96008 0.92926 0.91827 1.21892 1.01928 1.02034 0.94392 1.61759 1.07185 1.52136 1.03299 1.22530 1.00173 0.98093 0.91933 1.22056 0.87171 0.99127 1.00814 1.20324 0.81630 0.83534 0.83158 1.90607 1.53130 1.48229 1.49987 1.45909 1.06582 1.41066 1.35384 1.19567 0.87052 0.91400 0.90002 1.21463 1.25374 1.03135 1.07652 0.92061 1.24905 0.95470 0.98373 0.94822 1.69920 1.28622 1.37279 1.16852 0.86494 0.78507 0.83186 0.79649 1.19703 1.20743 1.20772 1.17426 0.98985 0.90113 0.88213 1.20992 0.97616 0.98366 0.91719 1.20994 1.05540 0.95470 0.99726 1.18865 0.96107 0.89489 0.88762 1.86031 1.77331 1.45207 1.14889 1.22715 1.00474 0.98885 0.80043 1.21761 1.02278 0.98718 0.98020 1.20157 1.05347 1.01323 0.89317 1.21023 0.97829 0.92117 0.99400 0.76731 0.91312 0.91840 0.90889 0.91788 0.89227 0.96145 0.87303 0.90030 0.94185 0.94093 0.92471 0.86078 0.85838 0.92147 0.92213 0.91607 0.90632 0.91661 0.85350 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.55 19.25 29.55 0.57 -1.98 16 2 C -0.16 -2.26 11.15 -37.12 -0.41 -2.67 16 3 C 0.19 2.69 2.53 -70.50 -0.18 2.51 16 4 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.87 8.94 37.16 0.33 -1.53 16 6 N -0.52 -8.74 4.35 -239.73 -1.04 -9.78 16 7 C 0.02 0.34 8.88 60.07 0.53 0.87 16 8 C 0.04 0.69 3.93 -4.97 -0.02 0.67 16 9 C 0.52 10.75 7.22 -10.98 -0.08 10.67 16 10 O -0.54 -12.07 14.10 5.55 0.08 -11.99 16 11 N -0.56 -11.72 2.51 -114.70 -0.29 -12.01 16 12 C 0.24 5.44 4.88 -5.19 -0.03 5.41 16 13 C -0.54 -13.42 9.16 -34.44 -0.32 -13.73 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 17 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.14 2.88 4.75 -83.62 -0.40 2.48 16 22 C -0.07 -1.27 9.56 -39.41 -0.38 -1.64 16 23 C -0.20 -3.23 9.03 -39.46 -0.36 -3.59 16 24 C 0.11 1.82 6.69 -39.23 -0.26 1.56 16 25 O -0.32 -4.64 10.14 -19.66 -0.20 -4.83 16 26 C 0.05 0.59 5.46 37.16 0.20 0.79 16 27 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 28 C -0.14 -2.32 9.98 -39.46 -0.39 -2.72 16 29 C -0.08 -1.51 9.68 -39.41 -0.38 -1.89 16 30 H 0.22 1.76 7.80 -54.09 -0.42 1.34 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.94 6.20 -51.93 -0.32 0.62 16 34 H 0.06 0.99 6.99 -51.93 -0.36 0.62 16 35 H 0.09 1.65 5.82 -51.93 -0.30 1.34 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 1.86 4.95 -51.93 -0.26 1.60 16 38 H 0.08 1.53 7.89 -51.93 -0.41 1.12 16 39 H 0.04 0.97 7.86 -51.93 -0.41 0.57 16 40 H 0.04 0.93 6.47 -51.93 -0.34 0.60 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 42 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 43 H 0.12 1.68 6.29 -52.48 -0.33 1.35 16 44 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 45 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 50 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 414.95 15.07 6.25 6.25 Total: -1.00 -29.69 414.95 -8.48 -38.17 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.72 Total: 6.06 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.28 Total: -4.02 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.59 Total: -44.62 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.12 Total: -16.83 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.69 -8.48 -38.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491804221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.244 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds