Wall clock time and date at job start Wed Apr 1 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47053 * 186.75045 * 3 2 1 5 5 C 1.52998 * 109.47152 * 66.75589 * 3 2 1 6 6 N 1.46898 * 109.47092 * 306.75544 * 3 2 1 7 7 C 1.46901 * 110.99852 * 303.95289 * 6 3 2 8 8 C 1.46908 * 110.99883 * 180.02562 * 6 3 2 9 9 C 1.50697 * 109.46798 * 189.99905 * 8 6 3 10 10 O 1.21287 * 120.00471 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99842 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99991 * 355.26480 * 11 9 8 13 13 C 1.50705 * 109.47047 * 89.99813 * 12 11 9 14 14 H 1.07999 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00034 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99925 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00242 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46759 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47323 * 120.00046 * 17 15 13 20 20 H 1.48497 * 109.47386 * 240.00451 * 17 15 13 21 21 C 1.40113 * 120.00030 * 175.26569 * 11 9 8 22 22 C 1.38843 * 120.01672 * 291.85431 * 21 11 9 23 23 C 1.38086 * 119.98465 * 179.72558 * 22 21 11 24 24 C 1.38720 * 120.01318 * 0.54671 * 23 22 21 25 25 O 1.35974 * 119.98110 * 179.70734 * 24 23 22 26 26 C 1.42896 * 117.00525 * 0.02562 * 25 24 23 27 27 C 1.52999 * 109.47576 * 180.02562 * 26 25 24 28 28 C 1.38716 * 120.03076 * 359.73092 * 24 23 22 29 29 C 1.38095 * 120.01710 * 359.97438 * 28 24 23 30 30 H 4.18740 * 15.03949 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47413 * 299.99726 * 5 3 2 32 32 H 1.08996 * 109.47336 * 59.99914 * 5 3 2 33 33 H 1.09002 * 109.47247 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47200 * 60.00157 * 7 6 3 35 35 H 1.09001 * 109.47011 * 180.02562 * 7 6 3 36 36 H 1.08999 * 109.47504 * 299.99757 * 7 6 3 37 37 H 1.08997 * 109.47044 * 309.99760 * 8 6 3 38 38 H 1.08996 * 109.47216 * 70.00069 * 8 6 3 39 39 H 1.08993 * 109.47779 * 210.00021 * 12 11 9 40 40 H 1.09000 * 109.47453 * 330.00391 * 12 11 9 41 41 H 0.97000 * 119.99691 * 180.02562 * 16 15 13 42 42 H 1.08008 * 120.00649 * 359.97403 * 22 21 11 43 43 H 1.08005 * 119.98966 * 180.27721 * 23 22 21 44 44 H 1.09002 * 109.46748 * 300.00433 * 26 25 24 45 45 H 1.09005 * 109.46839 * 59.99708 * 26 25 24 46 46 H 1.09003 * 109.46760 * 60.00013 * 27 26 25 47 47 H 1.08990 * 109.47112 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.46914 * 300.00578 * 27 26 25 49 49 H 1.08003 * 119.99304 * 179.97438 * 28 24 23 50 50 H 1.07997 * 120.00486 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0214 0.1208 5 6 3.1563 -0.5684 -1.3254 6 7 3.1360 -0.8279 1.1096 7 6 2.5891 -0.3665 2.3926 8 6 4.6046 -0.8502 1.1414 9 6 5.0699 -1.8926 2.1251 10 8 4.2582 -2.5518 2.7397 11 7 6.3882 -2.0918 2.3228 12 6 7.3684 -1.3697 1.5079 13 6 7.7207 -0.0685 2.1817 14 1 7.2608 0.1941 3.1229 15 6 8.6309 0.7863 1.5970 16 7 9.1913 0.4663 0.4511 17 14 9.0682 2.3988 2.4325 18 1 8.3064 2.5213 3.7013 19 1 10.5238 2.4260 2.7250 20 1 8.7223 3.5307 1.5356 21 6 6.8212 -2.9895 3.3076 22 6 6.6230 -2.6963 4.6502 23 6 7.0449 -3.5841 5.6200 24 6 7.6768 -4.7634 5.2536 25 8 8.0973 -5.6343 6.2094 26 6 7.8550 -5.2711 7.5700 27 6 8.3944 -6.3650 8.4937 28 6 7.8803 -5.0542 3.9126 29 6 7.4534 -4.1701 2.9414 30 1 -1.0499 -0.0010 -0.0006 31 1 2.7935 -1.5891 -1.4463 32 1 2.7927 0.0464 -2.1487 33 1 4.2463 -0.5675 -1.3256 34 1 1.5011 -0.4258 2.3661 35 1 2.9683 -0.9968 3.1969 36 1 2.8926 0.6658 2.5668 37 1 4.9859 -1.0912 0.1491 38 1 4.9764 0.1282 1.4457 39 1 8.2670 -1.9766 1.3976 40 1 6.9443 -1.1664 0.5246 41 1 9.8320 1.0675 0.0399 42 1 6.1353 -1.7758 4.9358 43 1 6.8867 -3.3582 6.6643 44 1 8.3583 -4.3296 7.7898 45 1 6.7829 -5.1559 7.7299 46 1 9.4665 -6.4797 8.3337 47 1 8.2092 -6.0882 9.5315 48 1 7.8915 -7.3067 8.2739 49 1 8.3727 -5.9724 3.6280 50 1 7.6123 -4.3966 1.8975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491804221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:18 Heat of formation + Delta-G solvation = 10.502734 kcal Electronic energy + Delta-G solvation = -30249.602739 eV Core-core repulsion = 26243.948781 eV Total energy + Delta-G solvation = -4005.653958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63303 -40.71489 -39.16254 -38.06439 -36.48170 -34.53702 -34.04645 -32.74844 -31.91736 -31.45832 -30.60231 -29.36639 -28.27859 -25.81564 -25.25845 -24.70369 -24.08196 -22.99924 -22.25771 -20.26161 -19.29002 -19.08842 -18.70063 -18.14212 -17.60444 -17.13748 -17.00776 -16.80427 -16.39502 -16.00438 -15.74767 -15.60500 -15.51911 -14.74059 -14.71074 -14.47578 -14.33150 -14.24074 -14.05856 -13.79407 -13.53562 -13.46984 -13.21866 -13.15767 -12.94437 -12.89035 -12.77765 -12.64979 -12.62615 -12.46484 -12.27964 -12.12825 -11.91442 -11.64895 -11.58822 -11.41158 -11.16274 -10.77535 -10.56518 -10.00463 -9.86965 -9.38802 -8.88612 -8.20882 -6.35199 0.33734 0.38077 1.38119 1.42126 1.51000 1.65939 1.69755 1.92252 2.17725 2.28983 2.40885 2.74467 3.08002 3.09633 3.40736 3.74934 3.82154 3.89601 4.07713 4.10550 4.18207 4.20518 4.23311 4.30449 4.38068 4.38924 4.40058 4.51525 4.56597 4.60678 4.68119 4.74863 4.89217 4.91715 4.96780 5.00764 5.01820 5.06836 5.13801 5.17347 5.20838 5.24214 5.32931 5.51220 5.60355 5.68756 5.80698 5.98277 6.03055 6.05561 6.44726 6.50412 6.70372 6.76674 7.29400 7.39889 8.84330 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007788 B = 0.003611 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.206137 B = 7752.420256 C =10211.265524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.210 4.210 3 C 0.184 3.816 4 H 0.065 0.935 5 C -0.140 4.140 6 N -0.528 5.528 7 C 0.028 3.972 8 C 0.049 3.951 9 C 0.521 3.479 10 O -0.562 6.562 11 N -0.560 5.560 12 C 0.254 3.746 13 C -0.543 4.543 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.274 1.274 21 C 0.106 3.894 22 C -0.084 4.084 23 C -0.194 4.194 24 C 0.117 3.883 25 O -0.325 6.325 26 C 0.041 3.959 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.093 4.093 30 H 0.252 0.748 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.022 0.978 40 H 0.039 0.961 41 H 0.268 0.732 42 H 0.111 0.889 43 H 0.151 0.849 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.065 0.935 49 H 0.153 0.847 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -5.573 6.223 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.211 4.211 3 C 0.077 3.923 4 H 0.083 0.917 5 C -0.198 4.198 6 N -0.253 5.253 7 C -0.120 4.120 8 C -0.081 4.081 9 C 0.311 3.689 10 O -0.441 6.441 11 N -0.288 5.288 12 C 0.135 3.865 13 C -0.581 4.581 14 H 0.069 0.931 15 C -0.173 4.173 16 N -0.554 5.554 17 Si 0.776 3.224 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.200 1.200 21 C 0.015 3.985 22 C -0.104 4.104 23 C -0.213 4.213 24 C 0.072 3.928 25 O -0.240 6.240 26 C -0.033 4.033 27 C -0.203 4.203 28 C -0.161 4.161 29 C -0.113 4.113 30 H 0.268 0.732 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.168 0.832 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.084 0.916 49 H 0.171 0.829 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.737 -6.497 6.287 11.900 hybrid contribution 0.646 2.091 0.440 2.233 sum -7.091 -4.406 6.727 10.721 Atomic orbital electron populations 1.25672 0.96507 0.99160 0.98393 1.22894 0.94264 1.01771 1.02127 1.18627 0.85557 0.95662 0.92432 0.91746 1.21864 1.01491 1.02010 0.94394 1.61769 1.06096 1.53294 1.04170 1.22411 1.00614 0.97731 0.91245 1.21917 0.88316 0.97584 1.00309 1.20733 0.81313 0.83680 0.83208 1.90579 1.53419 1.49235 1.50912 1.45828 1.06388 1.41152 1.35431 1.19228 0.86732 0.90509 0.90064 1.21592 1.25304 1.03993 1.07247 0.93149 1.25537 0.95391 1.01051 0.95307 1.69997 1.29177 1.38377 1.17855 0.85620 0.78034 0.79999 0.78732 1.19782 1.20592 1.19980 1.17774 1.01046 0.91088 0.88543 1.21032 0.98554 0.98824 0.91975 1.21220 1.04610 0.94938 1.00547 1.18974 0.95114 0.89431 0.89315 1.86050 1.76928 1.44822 1.16198 1.23092 1.01416 1.00359 0.78472 1.21790 1.02026 0.97841 0.98639 1.20430 1.04698 1.01687 0.89293 1.21150 0.97869 0.91966 1.00266 0.73176 0.91884 0.89869 0.91461 0.90721 0.91549 0.95637 0.86602 0.91121 0.96008 0.94290 0.92235 0.87123 0.83155 0.91465 0.91382 0.91710 0.88163 0.91634 0.82947 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 19.25 74.32 1.43 -2.46 16 2 C -0.21 -5.66 11.15 31.12 0.35 -5.32 16 3 C 0.18 5.30 2.53 43.11 0.11 5.41 16 4 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 5 C -0.14 -3.57 8.94 71.98 0.64 -2.93 16 6 N -0.53 -18.08 4.35 -912.38 -3.97 -22.05 16 7 C 0.03 0.93 8.88 127.69 1.13 2.07 16 8 C 0.05 1.82 3.93 85.55 0.34 2.15 16 9 C 0.52 22.18 7.22 87.66 0.63 22.82 16 10 O -0.56 -25.94 14.10 -3.05 -0.04 -25.99 16 11 N -0.56 -24.36 2.51 -635.18 -1.59 -25.95 16 12 C 0.25 12.02 4.88 85.63 0.42 12.44 16 13 C -0.54 -27.73 9.16 25.60 0.23 -27.49 16 14 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 15 C 0.03 1.44 5.46 84.65 0.46 1.90 16 16 N -0.92 -48.97 13.29 21.45 0.28 -48.68 16 17 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 C 0.11 4.39 4.75 38.11 0.18 4.57 16 22 C -0.08 -3.25 9.56 22.38 0.21 -3.04 16 23 C -0.19 -6.22 9.03 22.35 0.20 -6.01 16 24 C 0.12 3.66 6.69 22.50 0.15 3.81 16 25 O -0.33 -8.82 10.14 -93.26 -0.95 -9.76 16 26 C 0.04 0.80 5.46 71.98 0.39 1.19 16 27 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 28 C -0.14 -4.54 9.98 22.35 0.22 -4.32 16 29 C -0.09 -3.41 9.68 22.38 0.22 -3.19 16 30 H 0.25 3.13 7.80 -4.42 -0.03 3.10 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.76 6.20 -2.39 -0.01 1.74 16 34 H 0.07 2.29 6.99 -2.39 -0.02 2.27 16 35 H 0.07 2.52 5.82 -2.39 -0.01 2.51 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.12 4.10 4.95 -2.39 -0.01 4.09 16 38 H 0.07 2.77 7.89 -2.39 -0.02 2.75 16 39 H 0.02 1.11 7.86 -2.39 -0.02 1.09 16 40 H 0.04 1.85 6.47 -2.39 -0.02 1.83 16 41 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 42 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.15 3.85 6.29 -2.91 -0.02 3.83 16 44 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 45 H 0.07 1.23 7.66 -2.38 -0.02 1.21 16 46 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 50 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -64.16 414.95 4.75 -59.41 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.92 Total: 29.58 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 8.07 Total: 0.31 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -5.28 Total: -96.69 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.99 Total: -35.75 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -64.16 4.75 -59.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491804221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.912 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds