Wall clock time and date at job start Wed Apr 1 2020 03:29:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46765 * 124.34614 * 2 1
4 4 C 1.54484 * 105.47169 * 162.98149 * 3 2 1
5 5 C 1.54623 * 101.76458 * 25.41852 * 4 3 2
6 6 C 1.52994 * 110.49080 * 94.01177 * 5 4 3
7 7 C 1.50701 * 109.46943 * 64.41834 * 6 5 4
8 8 C 1.38241 * 119.99909 * 267.27177 * 7 6 5
9 9 C 1.38232 * 119.99362 * 179.74485 * 8 7 6
10 10 C 1.38237 * 120.00630 * 0.53514 * 9 8 7
11 11 C 1.38241 * 119.99594 * 359.74321 * 10 9 8
12 12 C 1.38234 * 119.99999 * 359.97438 * 11 10 9
13 13 C 1.50701 * 110.48512 * 216.52343 * 5 4 3
14 14 O 1.21287 * 120.00022 * 2.09419 * 13 5 4
15 15 N 1.34772 * 120.00009 * 182.09288 * 13 5 4
16 16 C 1.46501 * 119.99941 * 175.07364 * 15 13 5
17 17 C 1.53003 * 109.47021 * 180.02562 * 16 15 13
18 18 C 1.53006 * 109.47044 * 180.02562 * 17 16 15
19 19 C 1.50699 * 109.46958 * 179.97438 * 18 17 16
20 20 H 1.07998 * 120.00343 * 0.02562 * 19 18 17
21 21 C 1.37880 * 119.99628 * 179.97438 * 19 18 17
22 22 N 1.31512 * 120.00357 * 0.02562 * 21 19 18
23 23 Si 1.86806 * 119.99827 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47054 * 270.00204 * 23 21 19
25 25 H 1.48497 * 109.46929 * 150.00199 * 23 21 19
26 26 H 1.48502 * 109.47076 * 30.00265 * 23 21 19
27 27 C 1.34415 * 124.35401 * 179.97438 * 2 1 3
28 28 O 1.21285 * 124.93840 * 0.44959 * 27 2 1
29 29 H 1.08999 * 109.47265 * 90.00284 * 1 2 3
30 30 H 1.09001 * 109.46656 * 210.00124 * 1 2 3
31 31 H 1.08994 * 109.47649 * 329.99762 * 1 2 3
32 32 H 1.09003 * 110.24813 * 43.98548 * 3 2 1
33 33 H 1.08996 * 110.32343 * 282.02073 * 3 2 1
34 34 H 1.09004 * 110.96933 * 267.29644 * 4 3 2
35 35 H 1.09002 * 110.99801 * 143.55085 * 4 3 2
36 36 H 1.08998 * 109.47506 * 184.42429 * 6 5 4
37 37 H 1.09003 * 109.46718 * 304.42210 * 6 5 4
38 38 H 1.07998 * 119.99828 * 0.02562 * 8 7 6
39 39 H 1.08007 * 119.99678 * 180.30448 * 9 8 7
40 40 H 1.07998 * 120.00008 * 179.76994 * 10 9 8
41 41 H 1.07997 * 119.99700 * 179.97438 * 11 10 9
42 42 H 1.07992 * 119.99970 * 179.97438 * 12 11 10
43 43 H 0.96999 * 120.00042 * 355.07203 * 15 13 5
44 44 H 1.08997 * 109.47317 * 59.99812 * 16 15 13
45 45 H 1.09003 * 109.47189 * 299.99890 * 16 15 13
46 46 H 1.08997 * 109.47412 * 59.99646 * 17 16 15
47 47 H 1.08997 * 109.46787 * 299.99166 * 17 16 15
48 48 H 1.08997 * 109.47356 * 59.99550 * 18 17 16
49 49 H 1.08998 * 109.46667 * 299.99760 * 18 17 16
50 50 H 0.96996 * 119.99768 * 359.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2931 1.2118 0.0000
4 6 3.7010 0.7488 0.4358
5 6 3.6899 -0.7377 0.0101
6 6 4.2959 -0.8998 -1.3852
7 6 5.7501 -0.5058 -1.3501
8 6 6.1223 0.7912 -1.6506
9 6 7.4557 1.1537 -1.6132
10 6 8.4180 0.2167 -1.2861
11 6 8.0463 -1.0817 -0.9913
12 6 6.7123 -1.4429 -1.0229
13 6 4.4404 -1.5784 1.0107
14 8 4.9133 -1.0637 2.0018
15 7 4.5860 -2.9022 0.8040
16 6 5.4060 -3.7004 1.7187
17 6 5.4058 -5.1605 1.2614
18 6 6.2617 -5.9944 2.2171
19 6 6.2610 -7.4326 1.7670
20 1 5.7061 -7.7229 0.8872
21 6 6.9698 -8.3777 2.4780
22 7 7.6460 -8.0242 3.5491
23 14 6.9696 -10.1604 1.9197
24 1 5.8428 -10.8810 2.5650
25 1 8.2526 -10.8003 2.3063
26 1 6.8131 -10.2170 0.4440
27 6 2.2235 -1.1097 0.0005
28 8 1.7947 -2.2442 -0.0068
29 1 -0.3634 -0.0001 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5138
32 1 1.8984 1.9384 0.7102
33 1 2.3309 1.6444 -0.9997
34 1 3.8268 0.8449 1.5142
35 1 4.4758 1.3011 -0.0961
36 1 4.2086 -1.9394 -1.7008
37 1 3.7632 -0.2604 -2.0892
38 1 5.3709 1.5222 -1.9102
39 1 7.7461 2.1683 -1.8432
40 1 9.4601 0.4992 -1.2606
41 1 8.7981 -1.8138 -0.7361
42 1 6.4220 -2.4573 -0.7930
43 1 4.1479 -3.3264 0.0497
44 1 4.9953 -3.6348 2.7262
45 1 6.4274 -3.3198 1.7172
46 1 5.8168 -5.2259 0.2540
47 1 4.3846 -5.5415 1.2627
48 1 5.8504 -5.9290 3.2243
49 1 7.2830 -5.6135 2.2163
50 1 7.6465 -7.0985 3.8387
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602092075.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:29:59
Heat of formation + Delta-G solvation = -59.670255 kcal
Electronic energy + Delta-G solvation = -30882.747640 eV
Core-core repulsion = 26874.050753 eV
Total energy + Delta-G solvation = -4008.696887 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.68068 -39.37537 -38.84803 -36.82455 -35.49781 -34.75675 -33.51336 -31.66722
-31.17599 -30.92957 -28.98990 -27.18029 -26.43804 -25.60204 -23.43620 -22.72092
-22.19689 -21.53551 -20.84481 -20.58568 -19.25906 -17.52210 -16.89069 -16.80624
-16.76545 -16.42176 -15.77529 -15.45737 -15.31733 -15.21567 -14.91151 -14.27934
-14.14034 -13.83249 -13.71325 -13.55242 -13.35499 -13.27771 -13.13885 -12.99646
-12.88549 -12.76411 -12.55920 -12.22092 -11.89916 -11.80165 -11.58464 -11.40985
-11.25833 -11.10164 -10.85990 -10.75676 -10.18803 -10.10950 -9.97994 -9.95301
-9.58955 -9.12099 -9.02376 -8.87369 -8.78380 -8.53961 -8.30363 -6.33988
-4.03259 1.15785 1.27757 2.12048 2.48901 2.80907 3.32414 3.45601
3.49029 3.60289 3.64766 3.85673 4.06048 4.43254 4.50527 4.56188
4.57631 4.70999 4.78034 4.85684 4.86777 4.88848 4.98491 5.07170
5.12178 5.16141 5.35210 5.36146 5.43261 5.46271 5.52793 5.54964
5.65853 5.71460 5.77848 5.86483 5.91495 6.08513 6.09404 6.30523
6.40145 6.43594 6.45066 6.51932 6.64862 6.77244 6.86553 6.88997
7.39499 7.52021 7.66108 7.78955 8.22034 8.31138 8.48675 8.90564
9.69084 11.06857
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.010542 B = 0.003026 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2655.477823 B = 9251.461656 C =11115.657078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.096 3.904
2 N -0.620 5.620
3 C 0.102 3.898
4 C -0.121 4.121
5 C -0.110 4.110
6 C -0.056 4.056
7 C -0.088 4.088
8 C -0.115 4.115
9 C -0.122 4.122
10 C -0.119 4.119
11 C -0.112 4.112
12 C -0.105 4.105
13 C 0.537 3.463
14 O -0.534 6.534
15 N -0.713 5.713
16 C 0.117 3.883
17 C -0.114 4.114
18 C 0.012 3.988
19 C -0.602 4.602
20 H 0.049 0.951
21 C 0.014 3.986
22 N -0.913 5.913
23 Si 1.072 2.928
24 H -0.288 1.288
25 H -0.284 1.284
26 H -0.289 1.289
27 C 0.530 3.470
28 O -0.511 6.511
29 H 0.058 0.942
30 H 0.077 0.923
31 H 0.073 0.927
32 H 0.083 0.917
33 H 0.074 0.926
34 H 0.102 0.898
35 H 0.101 0.899
36 H 0.087 0.913
37 H 0.087 0.913
38 H 0.121 0.879
39 H 0.121 0.879
40 H 0.121 0.879
41 H 0.124 0.876
42 H 0.126 0.874
43 H 0.403 0.597
44 H 0.063 0.937
45 H 0.064 0.936
46 H 0.056 0.944
47 H 0.057 0.943
48 H 0.009 0.991
49 H 0.009 0.991
50 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.091 25.301 -13.420 30.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.355 5.355
3 C -0.021 4.021
4 C -0.158 4.158
5 C -0.117 4.117
6 C -0.094 4.094
7 C -0.088 4.088
8 C -0.133 4.133
9 C -0.140 4.140
10 C -0.137 4.137
11 C -0.130 4.130
12 C -0.123 4.123
13 C 0.320 3.680
14 O -0.411 6.411
15 N -0.363 5.363
16 C -0.006 4.006
17 C -0.152 4.152
18 C -0.026 4.026
19 C -0.640 4.640
20 H 0.068 0.932
21 C -0.190 4.190
22 N -0.550 5.550
23 Si 0.900 3.100
24 H -0.215 1.215
25 H -0.210 1.210
26 H -0.215 1.215
27 C 0.316 3.684
28 O -0.385 6.385
29 H 0.077 0.923
30 H 0.095 0.905
31 H 0.092 0.908
32 H 0.102 0.898
33 H 0.093 0.907
34 H 0.121 0.879
35 H 0.119 0.881
36 H 0.105 0.895
37 H 0.106 0.894
38 H 0.139 0.861
39 H 0.139 0.861
40 H 0.139 0.861
41 H 0.142 0.858
42 H 0.144 0.856
43 H 0.238 0.762
44 H 0.082 0.918
45 H 0.082 0.918
46 H 0.074 0.926
47 H 0.076 0.924
48 H 0.028 0.972
49 H 0.028 0.972
50 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -8.476 23.535 -12.341 27.893
hybrid contribution -0.885 1.404 -0.684 1.795
sum -9.361 24.939 -13.026 29.652
Atomic orbital electron populations
1.21590 0.77488 1.03439 1.02048 1.48068 1.06639 1.07170 1.73607
1.22203 0.90552 0.87312 1.02039 1.22805 0.96368 0.91824 1.04842
1.21660 0.94058 0.98340 0.97612 1.20420 0.92415 1.03759 0.92800
1.19612 0.94207 0.94235 1.00760 1.20958 0.96209 0.95263 1.00826
1.21092 0.93025 0.99387 1.00464 1.21187 0.99517 0.93531 0.99452
1.21226 0.96249 0.96574 0.98953 1.21242 0.92959 0.99832 0.98262
1.19501 0.80059 0.82664 0.85762 1.90686 1.49436 1.72385 1.28625
1.46125 1.51022 1.07624 1.31556 1.21660 0.94173 0.91696 0.93039
1.21754 1.01488 0.91294 1.00660 1.19147 0.94107 0.95128 0.94180
1.22049 1.34284 0.93384 1.14308 0.93236 1.25857 0.93255 1.05454
0.94406 1.70745 1.39872 1.20895 1.23452 0.83509 0.76594 0.74640
0.75248 1.21464 1.21007 1.21488 1.20279 0.87670 0.84746 0.75738
1.90777 1.77886 1.20647 1.49212 0.92335 0.90469 0.90820 0.89837
0.90736 0.87914 0.88060 0.89492 0.89448 0.86076 0.86118 0.86131
0.85760 0.85617 0.76185 0.91837 0.91772 0.92569 0.92380 0.97236
0.97235 0.92020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.67 10.96 59.85 0.66 1.33 16
2 N -0.62 -5.75 3.33 -180.29 -0.60 -6.36 16
3 C 0.10 0.66 7.35 -3.12 -0.02 0.64 16
4 C -0.12 -1.10 5.86 -25.10 -0.15 -1.24 16
5 C -0.11 -1.27 0.48 -155.68 -0.07 -1.35 16
6 C -0.06 -0.54 4.39 -27.89 -0.12 -0.67 16
7 C -0.09 -0.93 4.44 -104.62 -0.46 -1.40 16
8 C -0.11 -1.02 8.02 -39.58 -0.32 -1.33 16
9 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
10 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16
11 C -0.11 -1.33 10.05 -39.58 -0.40 -1.72 16
12 C -0.10 -1.31 8.61 -39.58 -0.34 -1.65 16
13 C 0.54 8.37 4.93 -10.99 -0.05 8.31 16
14 O -0.53 -10.00 15.48 5.55 0.09 -9.91 16
15 N -0.71 -11.33 4.11 -60.29 -0.25 -11.58 16
16 C 0.12 2.16 5.68 -4.04 -0.02 2.13 16
17 C -0.11 -2.35 5.27 -26.73 -0.14 -2.49 16
18 C 0.01 0.31 4.28 -27.88 -0.12 0.19 16
19 C -0.60 -17.38 9.11 -34.44 -0.31 -17.69 16
20 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16
21 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16
22 N -0.91 -28.47 13.65 55.43 0.76 -27.72 16
23 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16
24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16
27 C 0.53 6.70 6.77 -10.86 -0.07 6.63 16
28 O -0.51 -8.18 16.79 5.55 0.09 -8.09 16
29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
30 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16
31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16
32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
34 H 0.10 1.14 6.97 -51.93 -0.36 0.78 16
35 H 0.10 0.78 5.17 -51.93 -0.27 0.51 16
36 H 0.09 0.88 7.52 -51.93 -0.39 0.49 16
37 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16
38 H 0.12 0.74 7.52 -52.49 -0.39 0.34 16
39 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16
40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16
42 H 0.13 1.67 6.93 -52.49 -0.36 1.31 16
43 H 0.40 5.95 7.38 -40.82 -0.30 5.65 16
44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
46 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
47 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
48 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16
49 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16
50 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16
LS Contribution 404.12 15.07 6.09 6.09
Total: -1.00 -36.19 404.12 -9.65 -45.84
By element:
Atomic # 1 Polarization: 12.05 SS G_CDS: -7.89 Total: 4.16 kcal
Atomic # 6 Polarization: -10.25 SS G_CDS: -2.85 Total: -13.10 kcal
Atomic # 7 Polarization: -45.56 SS G_CDS: -0.09 Total: -45.65 kcal
Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal
Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -36.19 -9.65 -45.84 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602092075.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.832 kcal
(2) G-P(sol) polarization free energy of solvation -36.192 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds