Wall clock time and date at job start Wed Apr 1 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46823 * 124.36259 * 2 1 4 4 C 1.54586 * 105.49347 * 196.92501 * 3 2 1 5 5 C 1.54135 * 101.65088 * 335.01318 * 4 3 2 6 6 C 1.52537 * 110.07087 * 265.35600 * 5 4 3 7 7 C 1.53141 * 109.32775 * 181.95274 * 6 5 4 8 8 N 1.46852 * 109.45114 * 58.25486 * 7 6 5 9 9 C 1.46897 * 111.00231 * 173.62798 * 8 7 6 10 10 C 1.50705 * 109.46861 * 314.34179 * 9 8 7 11 11 C 1.38301 * 119.93270 * 269.72864 * 10 9 8 12 12 C 1.38099 * 120.06520 * 179.72572 * 11 10 9 13 13 C 1.38882 * 119.93077 * 0.55040 * 12 11 10 14 14 O 1.35755 * 120.06531 * 179.74885 * 13 12 11 15 15 C 1.34830 * 116.99328 * 174.44064 * 14 13 12 16 16 H 1.07995 * 120.00658 * 5.04733 * 15 14 13 17 17 C 1.38653 * 119.99189 * 185.05555 * 15 14 13 18 18 N 1.31556 * 120.00776 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99715 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47391 * 59.99736 * 19 17 15 21 21 H 1.48499 * 109.47371 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47162 * 299.99727 * 19 17 15 23 23 C 1.38878 * 119.86286 * 359.72123 * 13 12 11 24 24 C 1.38101 * 119.93116 * 0.02562 * 23 13 12 25 25 C 1.46867 * 111.30126 * 297.79957 * 8 7 6 26 26 C 1.52540 * 110.06935 * 143.31237 * 5 4 3 27 27 C 1.34570 * 124.35938 * 179.97438 * 2 1 3 28 28 O 1.21281 * 125.03306 * 359.31507 * 27 2 1 29 29 H 1.09003 * 109.47394 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47132 * 300.02457 * 1 2 3 31 31 H 1.09002 * 109.47034 * 60.02681 * 1 2 3 32 32 H 1.09004 * 110.23773 * 315.92713 * 3 2 1 33 33 H 1.08999 * 110.24105 * 77.83012 * 3 2 1 34 34 H 1.09000 * 110.99000 * 216.92446 * 4 3 2 35 35 H 1.09003 * 110.99269 * 93.10899 * 4 3 2 36 36 H 1.08999 * 109.49627 * 301.90921 * 6 5 4 37 37 H 1.08995 * 109.49198 * 61.99413 * 6 5 4 38 38 H 1.08999 * 109.47535 * 178.25014 * 7 6 5 39 39 H 1.09002 * 109.47168 * 298.26548 * 7 6 5 40 40 H 1.08995 * 109.47121 * 74.34141 * 9 8 7 41 41 H 1.09002 * 109.47002 * 194.34845 * 9 8 7 42 42 H 1.07994 * 119.96011 * 359.97438 * 11 10 9 43 43 H 1.08000 * 120.02986 * 180.26792 * 12 11 10 44 44 H 0.96999 * 120.00728 * 179.97438 * 18 17 15 45 45 H 1.07993 * 120.03407 * 179.97438 * 23 13 12 46 46 H 1.07998 * 119.96373 * 180.02562 * 24 23 13 47 47 H 1.08995 * 109.47470 * 302.20856 * 25 8 7 48 48 H 1.09000 * 109.47740 * 182.18535 * 25 8 7 49 49 H 1.08998 * 109.49194 * 298.00975 * 26 5 4 50 50 H 1.08993 * 109.49221 * 58.06917 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2936 1.2120 0.0000 4 6 3.7032 0.7485 -0.4337 5 6 3.6846 -0.7355 -0.0174 6 6 4.2985 -0.8978 1.3696 7 6 4.3160 -2.3822 1.7455 8 7 5.0811 -3.1321 0.7411 9 6 5.2484 -4.5343 1.1456 10 6 5.6586 -4.5935 2.5945 11 6 6.9995 -4.5824 2.9331 12 6 7.3784 -4.6309 4.2602 13 6 6.4116 -4.7024 5.2547 14 8 6.7812 -4.7553 6.5599 15 6 5.7946 -4.7070 7.4777 16 1 4.7620 -4.7121 7.1615 17 6 6.1060 -4.6508 8.8277 18 7 7.3638 -4.6450 9.2131 19 14 4.7393 -4.5833 10.0993 20 1 3.8893 -5.7948 9.9773 21 1 5.3314 -4.5296 11.4601 22 1 3.9106 -3.3722 9.8715 23 6 5.0661 -4.7190 4.9112 24 6 4.6934 -4.6651 3.5825 25 6 4.4566 -3.0378 -0.5849 26 6 4.4440 -1.5754 -1.0395 27 6 2.2244 -1.1109 0.0005 28 8 1.7976 -2.2461 0.0129 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 1.8999 1.9380 -0.7114 33 1 2.3285 1.6450 0.9997 34 1 4.4770 1.2955 0.1049 35 1 3.8334 0.8502 -1.5111 36 1 5.3179 -0.5120 1.3636 37 1 3.7043 -0.3451 2.0972 38 1 4.7826 -2.5040 2.7231 39 1 3.2943 -2.7602 1.7808 40 1 4.3060 -5.0657 1.0128 41 1 6.0183 -5.0005 0.5307 42 1 7.7508 -4.5317 2.1590 43 1 8.4256 -4.6178 4.5241 44 1 7.5817 -4.6053 10.1574 45 1 4.3120 -4.7750 5.6822 46 1 3.6472 -4.6776 3.3148 47 1 3.4339 -3.4109 -0.5323 48 1 5.0252 -3.6350 -1.2977 49 1 3.9523 -1.5002 -2.0093 50 1 5.4678 -1.2106 -1.1214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773924480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:10 Heat of formation + Delta-G solvation = -46.340681 kcal Electronic energy + Delta-G solvation = -30678.380897 eV Core-core repulsion = 26670.262023 eV Total energy + Delta-G solvation = -4008.118873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.24980 -40.88987 -39.35967 -37.95195 -37.51511 -35.16862 -34.25709 -32.16130 -31.87806 -31.64491 -30.13988 -27.93174 -27.62871 -26.78651 -24.84452 -24.26277 -23.56252 -22.38046 -22.08710 -21.56648 -19.84279 -19.60457 -18.80866 -17.62304 -17.25742 -16.86989 -16.56431 -16.46760 -16.26157 -15.95931 -15.58811 -15.40848 -15.34825 -15.14138 -14.86053 -14.63726 -14.53567 -14.32018 -14.12477 -13.80490 -13.62289 -13.53160 -13.34557 -13.30361 -13.15947 -12.90592 -12.77936 -12.74167 -12.45185 -12.34869 -12.28710 -12.16269 -12.07047 -11.93305 -11.28879 -11.20162 -11.17540 -10.78866 -10.56858 -9.77819 -9.68724 -9.21873 -8.84936 -8.47972 -6.16097 0.57698 0.65559 1.33117 1.43477 1.49174 1.54768 2.08944 2.16602 2.73710 3.03269 3.25069 3.35747 3.49724 3.51473 3.69884 3.94059 3.98776 4.02323 4.04763 4.17796 4.31109 4.33984 4.36473 4.39382 4.50317 4.57894 4.58538 4.60778 4.66031 4.69125 4.75140 4.80796 4.81183 4.84488 4.94050 4.98811 5.01570 5.07710 5.13354 5.14288 5.16832 5.22204 5.28010 5.34879 5.56140 5.60401 5.69470 5.80232 6.01682 6.09825 6.13399 6.17433 6.27588 6.96536 7.17536 7.76981 8.74924 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.002634 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.783507 B =10625.680858 C =11768.403099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.097 3.903 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.089 4.089 7 C 0.052 3.948 8 N -0.524 5.524 9 C 0.114 3.886 10 C -0.155 4.155 11 C -0.043 4.043 12 C -0.201 4.201 13 C 0.118 3.882 14 O -0.229 6.229 15 C -0.415 4.415 16 H 0.098 0.902 17 C -0.020 4.020 18 N -0.919 5.919 19 Si 1.016 2.984 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.241 4.241 24 C -0.063 4.063 25 C 0.041 3.959 26 C -0.085 4.085 27 C 0.512 3.488 28 O -0.569 6.569 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.013 0.987 40 H 0.028 0.972 41 H 0.098 0.902 42 H 0.151 0.849 43 H 0.117 0.883 44 H 0.273 0.727 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.034 0.966 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.256 14.559 -23.976 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.363 5.363 3 C -0.024 4.024 4 C -0.154 4.154 5 C -0.094 4.094 6 C -0.127 4.127 7 C -0.076 4.076 8 N -0.248 5.248 9 C -0.013 4.013 10 C -0.156 4.156 11 C -0.061 4.061 12 C -0.220 4.220 13 C 0.067 3.933 14 O -0.136 6.136 15 C -0.491 4.491 16 H 0.115 0.885 17 C -0.218 4.218 18 N -0.557 5.557 19 Si 0.835 3.165 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.183 1.183 23 C -0.261 4.261 24 C -0.082 4.082 25 C -0.087 4.087 26 C -0.123 4.123 27 C 0.301 3.699 28 O -0.448 6.448 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.116 0.884 42 H 0.169 0.831 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.052 0.948 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.794 14.195 -23.728 29.333 hybrid contribution -1.559 -0.806 1.331 2.203 sum -11.353 13.389 -22.397 28.457 Atomic orbital electron populations 1.21659 0.77635 1.02832 1.03178 1.48473 1.07186 1.07938 1.72684 1.22383 0.90364 0.86410 1.03285 1.22767 0.97005 0.91710 1.03901 1.21079 0.91414 0.98779 0.98116 1.21412 1.02218 0.95086 0.93956 1.22108 0.94937 0.94571 0.95958 1.62154 1.49496 1.10899 1.02280 1.20846 0.99897 0.89186 0.91367 1.19517 0.93047 1.08117 0.94939 1.20831 0.95871 0.95431 0.93969 1.20479 0.98095 1.11261 0.92142 1.19901 0.93969 0.94110 0.85303 1.83944 1.36288 1.81602 1.11764 1.21736 0.87865 1.53317 0.86211 0.88513 1.26540 1.00508 0.95806 0.98919 1.70166 1.19390 1.48665 1.17480 0.84695 0.76140 0.79834 0.75844 1.18366 1.19310 1.18252 1.21136 0.95247 1.12217 0.97451 1.20797 0.98896 0.97075 0.91421 1.22318 0.97852 0.98254 0.90266 1.21391 1.01373 0.93051 0.96498 1.21240 0.90186 0.84208 0.74261 1.90640 1.79380 1.22756 1.52057 0.92296 0.90807 0.89764 0.87735 0.90277 0.86951 0.88025 0.88560 0.91577 0.91768 0.96884 0.95382 0.88380 0.83124 0.86470 0.91756 0.86793 0.86636 0.94820 0.89706 0.90544 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 11.15 127.77 1.42 2.63 16 2 N -0.63 -10.50 3.34 -843.00 -2.81 -13.31 16 3 C 0.10 0.87 7.36 86.86 0.64 1.51 16 4 C -0.12 -1.01 6.21 31.52 0.20 -0.81 16 5 C -0.09 -1.57 0.55 -52.82 -0.03 -1.60 16 6 C -0.09 -1.88 4.76 30.49 0.15 -1.74 16 7 C 0.05 1.51 4.37 86.36 0.38 1.89 16 8 N -0.52 -13.68 4.79 -900.43 -4.31 -17.99 16 9 C 0.11 3.17 5.43 85.56 0.46 3.63 16 10 C -0.16 -5.27 4.12 -19.83 -0.08 -5.35 16 11 C -0.04 -1.48 9.69 22.25 0.22 -1.27 16 12 C -0.20 -8.71 9.99 22.39 0.22 -8.49 16 13 C 0.12 6.03 6.65 22.58 0.15 6.18 16 14 O -0.23 -14.10 9.76 -22.79 -0.22 -14.32 16 15 C -0.42 -24.77 9.49 67.92 0.64 -24.13 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 18 N -0.92 -57.03 13.67 21.61 0.30 -56.74 16 19 Si 1.02 43.71 29.55 68.60 2.03 45.73 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.24 -11.14 9.17 22.39 0.21 -10.93 16 24 C -0.06 -2.43 7.77 22.25 0.17 -2.25 16 25 C 0.04 0.92 5.20 86.36 0.45 1.37 16 26 C -0.09 -1.43 4.77 30.49 0.15 -1.29 16 27 C 0.51 11.89 6.33 87.72 0.56 12.45 16 28 O -0.57 -18.22 13.61 -3.03 -0.04 -18.26 16 29 H 0.06 1.08 7.54 -2.39 -0.02 1.06 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 0.64 7.86 -2.39 -0.02 0.62 16 35 H 0.10 0.57 7.89 -2.39 -0.02 0.55 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 2.17 5.61 -2.39 -0.01 2.16 16 39 H 0.01 0.44 6.68 -2.39 -0.02 0.42 16 40 H 0.03 0.82 8.02 -2.39 -0.02 0.80 16 41 H 0.10 2.31 8.08 -2.39 -0.02 2.29 16 42 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.11 5.41 5.64 -2.91 -0.02 5.39 16 46 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 47 H 0.03 0.97 5.79 -2.39 -0.01 0.96 16 48 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -78.66 388.58 2.23 -76.42 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.94 Total: 27.37 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 6.36 Total: -28.90 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -6.83 Total: -88.04 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.26 Total: -32.58 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -78.66 2.23 -76.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773924480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.082 kcal (2) G-P(sol) polarization free energy of solvation -78.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds