Wall clock time and date at job start Wed Apr 1 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99927 * 2 1 4 4 N 1.34777 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99790 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46928 * 179.97438 * 5 4 2 7 7 H 1.09006 * 109.49489 * 55.06454 * 6 5 4 8 8 C 1.53037 * 109.52409 * 175.14154 * 6 5 4 9 9 C 1.53033 * 109.54097 * 181.33236 * 8 6 5 10 10 C 1.53624 * 109.24438 * 298.51762 * 9 8 6 11 11 N 1.46926 * 108.54490 * 54.84755 * 10 9 8 12 12 C 1.34782 * 120.62783 * 126.37241 * 11 10 9 13 13 O 1.21282 * 119.99944 * 179.72474 * 12 11 10 14 14 C 1.50701 * 119.99864 * 359.72049 * 12 11 10 15 15 C 1.50698 * 109.46677 * 179.97438 * 14 12 11 16 16 C 1.37645 * 120.12950 * 264.97614 * 15 14 12 17 17 C 1.38610 * 120.24698 * 180.02562 * 16 15 14 18 18 C 1.38658 * 120.50399 * 0.02794 * 17 16 15 19 19 C 1.37599 * 120.24587 * 359.67005 * 18 17 16 20 20 C 1.40694 * 120.12773 * 85.00667 * 15 14 12 21 21 C 1.41397 * 120.24570 * 359.97438 * 20 15 14 22 22 H 1.08003 * 119.99715 * 334.50001 * 21 20 15 23 23 C 1.39943 * 120.00283 * 154.22562 * 21 20 15 24 24 N 1.30826 * 119.99549 * 343.04417 * 23 21 20 25 25 Si 1.86792 * 120.00109 * 163.05080 * 23 21 20 26 26 H 1.48503 * 109.47505 * 94.51055 * 25 23 21 27 27 H 1.48501 * 109.47356 * 214.50803 * 25 23 21 28 28 H 1.48498 * 109.47290 * 334.50937 * 25 23 21 29 29 C 1.46925 * 118.74251 * 306.10160 * 11 10 9 30 30 H 1.08999 * 109.47664 * 240.00378 * 1 2 3 31 31 H 1.09000 * 109.47494 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47229 * 119.99956 * 1 2 3 33 33 H 0.96993 * 120.00018 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47277 * 59.99599 * 5 4 2 35 35 H 1.08996 * 109.46759 * 299.99752 * 5 4 2 36 36 H 1.09001 * 109.46084 * 301.35674 * 8 6 5 37 37 H 1.08998 * 109.45895 * 61.32595 * 8 6 5 38 38 H 1.09003 * 109.49586 * 58.59011 * 9 8 6 39 39 H 1.08997 * 109.49982 * 178.65130 * 9 8 6 40 40 H 1.09002 * 109.73620 * 295.11725 * 10 9 8 41 41 H 1.08991 * 109.66822 * 174.54963 * 10 9 8 42 42 H 1.09000 * 109.46554 * 60.00458 * 14 12 11 43 43 H 1.08993 * 109.47330 * 300.00419 * 14 12 11 44 44 H 1.07997 * 119.87041 * 0.02562 * 16 15 14 45 45 H 1.08001 * 119.74257 * 179.97438 * 17 16 15 46 46 H 1.08001 * 119.87493 * 179.97438 * 18 17 16 47 47 H 1.07999 * 120.12537 * 180.32217 * 19 18 17 48 48 H 0.97004 * 119.99409 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.59134 * 173.64217 * 29 11 10 50 50 H 1.09001 * 109.58745 * 293.92883 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1559 -2.6097 0.0023 7 1 3.7226 -3.1494 -0.8399 8 6 5.6814 -2.6129 -0.1193 9 6 6.1892 -4.0562 -0.1516 10 6 5.8076 -4.7568 1.1613 11 7 4.3562 -4.6322 1.3526 12 6 3.5957 -5.7240 1.5675 13 8 2.3994 -5.6075 1.7291 14 6 4.2320 -7.0896 1.6071 15 6 3.1722 -8.1303 1.8609 16 6 2.9281 -8.5696 3.1424 17 6 1.9542 -9.5272 3.3786 18 6 1.2158 -10.0538 2.3297 19 6 1.4385 -9.6249 1.0414 20 6 2.4287 -8.6573 0.7890 21 6 2.6707 -8.2138 -0.5317 22 1 3.0893 -7.2331 -0.7038 23 6 2.3732 -9.0476 -1.6155 24 7 2.1920 -10.3291 -1.4243 25 14 2.2351 -8.3310 -3.3349 26 1 3.5390 -8.4643 -4.0331 27 1 1.1901 -9.0636 -4.0941 28 1 1.8664 -6.8953 -3.2447 29 6 3.7504 -3.2943 1.3113 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6958 -2.0072 0.0013 34 1 4.0089 -0.6531 0.8910 35 1 4.0094 -0.6536 -0.8889 36 1 5.9735 -2.1045 -1.0381 37 1 6.1149 -2.0947 0.7360 38 1 5.7369 -4.5823 -0.9923 39 1 7.2736 -4.0579 -0.2623 40 1 6.3278 -4.2850 1.9949 41 1 6.0800 -5.8107 1.1073 42 1 4.9720 -7.1225 2.4067 43 1 4.7189 -7.2913 0.6530 44 1 3.4976 -8.1666 3.9667 45 1 1.7697 -9.8663 4.3873 46 1 0.4597 -10.7997 2.5254 47 1 0.8587 -10.0326 0.2265 48 1 1.9862 -10.9071 -2.1756 49 1 2.6649 -3.3831 1.3563 50 1 4.1043 -2.7066 2.1583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777373102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:41 Heat of formation + Delta-G solvation = -71.727836 kcal Electronic energy + Delta-G solvation = -30625.133345 eV Core-core repulsion = 26615.913602 eV Total energy + Delta-G solvation = -4009.219743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.22110 -39.50398 -37.93407 -36.94524 -35.12341 -33.63126 -32.90634 -31.82700 -31.36092 -29.79639 -29.45601 -27.29914 -25.73582 -25.34074 -24.55107 -22.30663 -21.07138 -20.93334 -20.46031 -19.80229 -18.52442 -17.17097 -17.06188 -16.59973 -16.24256 -16.05900 -15.50180 -15.30050 -14.99715 -14.65500 -14.46905 -14.06114 -13.83552 -13.60940 -13.56298 -13.33375 -13.15668 -12.93593 -12.73608 -12.61555 -12.56174 -12.32348 -12.02191 -11.67391 -11.58872 -11.27780 -11.20088 -11.14134 -11.01517 -10.96211 -10.83711 -10.72900 -10.67925 -10.41353 -10.04378 -9.48548 -9.37836 -9.26300 -9.17944 -9.14544 -8.39068 -7.32029 -7.29432 -6.75620 -4.35040 2.48559 2.76415 2.93502 3.04348 3.06812 3.08627 3.24715 3.25791 3.36822 3.91159 4.46377 4.56521 4.62449 4.64725 4.69444 4.87996 5.02769 5.11007 5.17743 5.19689 5.27394 5.38070 5.43938 5.49907 5.54662 5.66368 5.70298 5.70958 5.75525 5.87265 5.90564 5.94362 6.02154 6.12361 6.19583 6.26602 6.28074 6.41374 6.50654 6.73939 6.81384 7.07398 7.28688 7.32250 7.41584 7.62055 7.75693 7.92818 8.04649 8.05957 8.12771 8.30777 8.63583 8.78458 8.90706 9.00984 10.18945 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009534 B = 0.003320 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.305737 B = 8432.503530 C = 8913.794750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.554 6.554 4 N -0.731 5.731 5 C 0.127 3.873 6 C -0.117 4.117 7 H 0.084 0.916 8 C -0.109 4.109 9 C -0.136 4.136 10 C 0.108 3.892 11 N -0.626 5.626 12 C 0.519 3.481 13 O -0.521 6.521 14 C -0.069 4.069 15 C -0.181 4.181 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.130 3.870 21 C -0.456 4.456 22 H 0.073 0.927 23 C 0.078 3.922 24 N -0.794 5.794 25 Si 0.900 3.100 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.262 1.262 29 C 0.119 3.881 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.406 0.594 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.279 0.721 49 H 0.089 0.911 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.535 12.923 0.328 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.298 3.702 3 O -0.432 6.432 4 N -0.384 5.384 5 C 0.003 3.997 6 C -0.137 4.137 7 H 0.102 0.898 8 C -0.147 4.147 9 C -0.174 4.174 10 C -0.015 4.015 11 N -0.362 5.362 12 C 0.309 3.691 13 O -0.395 6.395 14 C -0.108 4.108 15 C -0.183 4.183 16 C -0.100 4.100 17 C -0.259 4.259 18 C -0.125 4.125 19 C -0.179 4.179 20 C 0.128 3.872 21 C -0.486 4.486 22 H 0.091 0.909 23 C -0.139 4.139 24 N -0.420 5.420 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.186 1.186 29 C -0.005 4.005 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.133 0.867 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.254 13.487 0.293 14.477 hybrid contribution -0.235 -0.232 -0.869 0.930 sum 5.018 13.254 -0.577 14.184 Atomic orbital electron populations 1.21930 0.91633 1.05410 1.04626 1.20823 0.90710 0.83347 0.75308 1.90707 1.71027 1.31496 1.49957 1.46160 1.07593 1.09154 1.75507 1.21350 0.79699 0.96213 1.02443 1.21821 0.97179 0.94878 0.99793 0.89755 1.21454 0.93677 0.97168 1.02365 1.21998 1.01154 0.95745 0.98527 1.21786 0.80737 1.02156 0.96834 1.48228 1.07798 1.06244 1.73958 1.21278 0.87134 0.85948 0.74757 1.90659 1.14960 1.86132 1.47714 1.20284 0.97853 0.89822 1.02868 1.19059 1.01835 1.03621 0.93818 1.20299 0.97603 0.97263 0.94786 1.20302 1.03776 1.04988 0.96819 1.20672 0.98843 0.99143 0.93846 1.21268 0.99989 1.01737 0.94910 1.17318 0.88355 0.89651 0.91908 1.19438 1.37613 1.01307 0.90240 0.90894 1.25861 0.92533 0.94249 1.01294 1.69828 1.34501 1.04025 1.33614 0.86433 0.78812 0.80521 0.81771 1.19625 1.20020 1.18591 1.21468 1.00072 0.83258 0.95671 0.89158 0.89061 0.89279 0.75887 0.91312 0.91230 0.91450 0.91501 0.90977 0.90604 0.91791 0.89111 0.90727 0.88609 0.89826 0.89688 0.89607 0.86677 0.90978 0.89250 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 10.32 36.00 0.37 -1.01 16 2 C 0.51 5.84 7.94 -10.99 -0.09 5.76 16 3 O -0.55 -8.54 17.09 5.56 0.09 -8.45 16 4 N -0.73 -7.47 5.33 -60.29 -0.32 -7.80 16 5 C 0.13 1.27 5.07 -4.04 -0.02 1.25 16 6 C -0.12 -1.18 2.37 -90.50 -0.21 -1.39 16 7 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.11 -0.92 5.17 -26.70 -0.14 -1.06 16 9 C -0.14 -1.24 6.10 -26.39 -0.16 -1.40 16 10 C 0.11 1.15 6.37 -3.49 -0.02 1.13 16 11 N -0.63 -8.83 2.97 -172.51 -0.51 -9.34 16 12 C 0.52 9.75 7.33 -10.98 -0.08 9.67 16 13 O -0.52 -11.93 15.45 5.56 0.09 -11.84 16 14 C -0.07 -1.31 3.53 -29.04 -0.10 -1.41 16 15 C -0.18 -4.28 4.43 -103.91 -0.46 -4.74 16 16 C -0.08 -1.85 9.66 -39.66 -0.38 -2.24 16 17 C -0.24 -5.53 10.05 -39.29 -0.39 -5.92 16 18 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 19 C -0.16 -4.21 8.68 -38.87 -0.34 -4.55 16 20 C 0.13 3.41 5.56 -106.82 -0.59 2.81 16 21 C -0.46 -11.70 8.15 -37.74 -0.31 -12.00 16 22 H 0.07 1.82 6.67 -52.48 -0.35 1.47 16 23 C 0.08 1.92 5.15 -17.34 -0.09 1.83 16 24 N -0.79 -20.16 11.01 55.55 0.61 -19.55 16 25 Si 0.90 18.39 29.59 -169.99 -5.03 13.36 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 29 C 0.12 1.45 5.51 -3.71 -0.02 1.43 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.41 3.80 7.69 -40.82 -0.31 3.48 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.96 5.93 -51.93 -0.31 0.66 16 42 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 43 H 0.10 1.79 6.62 -51.93 -0.34 1.45 16 44 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 47 H 0.12 3.12 6.25 -52.49 -0.33 2.79 16 48 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 49 H 0.09 1.25 6.20 -51.93 -0.32 0.93 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -32.68 401.52 -10.31 -42.98 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.85 Total: 9.39 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -3.44 Total: -14.81 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.22 Total: -36.68 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.18 Total: -20.29 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.68 -10.31 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777373102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.743 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds