Wall clock time and date at job start Wed Apr 1 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21289 * 119.99952 * 2 1 4 4 N 1.34776 * 120.00125 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99755 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47216 * 155.00045 * 5 4 2 7 7 C 1.52993 * 109.47419 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47461 * 300.00428 * 7 6 5 9 9 N 1.46501 * 109.47257 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00060 * 154.99939 * 9 8 7 11 11 O 1.21280 * 120.00400 * 359.97438 * 10 9 8 12 12 C 1.50708 * 119.99885 * 179.97438 * 10 9 8 13 13 C 1.50703 * 109.46845 * 179.97438 * 12 10 9 14 14 C 1.37630 * 120.13156 * 264.99818 * 13 12 10 15 15 C 1.38610 * 120.25206 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50035 * 0.02562 * 15 14 13 17 17 C 1.37603 * 120.24959 * 0.02562 * 16 15 14 18 18 C 1.40704 * 120.12471 * 84.72663 * 13 12 10 19 19 C 1.41398 * 120.24312 * 359.97438 * 18 13 12 20 20 H 1.07999 * 120.00339 * 333.89897 * 19 18 13 21 21 C 1.39952 * 119.99779 * 153.90037 * 19 18 13 22 22 N 1.30817 * 119.99956 * 343.70601 * 21 19 18 23 23 Si 1.86797 * 119.99651 * 163.70694 * 21 19 18 24 24 H 1.48494 * 109.47474 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46963 * 120.00040 * 23 21 19 26 26 H 1.48500 * 109.46769 * 239.99693 * 23 21 19 27 27 C 1.52998 * 109.47154 * 59.99409 * 8 7 6 28 28 C 1.52995 * 109.47154 * 300.00353 * 27 8 7 29 29 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47675 * 300.00213 * 1 2 3 31 31 H 1.08999 * 109.47437 * 60.00808 * 1 2 3 32 32 H 0.96994 * 120.00102 * 0.02562 * 4 2 1 33 33 H 1.09001 * 109.47353 * 34.99679 * 5 4 2 34 34 H 1.09004 * 109.46771 * 59.99708 * 6 5 4 35 35 H 1.09003 * 109.47018 * 300.00153 * 6 5 4 36 36 H 1.09002 * 109.47272 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46996 * 60.00325 * 7 6 5 38 38 H 1.09001 * 109.46580 * 299.99555 * 8 7 6 39 39 H 0.97008 * 119.99646 * 334.99695 * 9 8 7 40 40 H 1.08999 * 109.46840 * 59.99920 * 12 10 9 41 41 H 1.08997 * 109.46960 * 299.99356 * 12 10 9 42 42 H 1.08003 * 119.87679 * 0.02562 * 14 13 12 43 43 H 1.07999 * 119.75361 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.88163 * 179.97438 * 16 15 14 45 45 H 1.08004 * 120.12880 * 179.97438 * 17 16 15 46 46 H 0.97000 * 120.00500 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.46771 * 60.00428 * 27 8 7 48 48 H 1.09003 * 109.47018 * 179.97438 * 27 8 7 49 49 H 1.08994 * 109.47385 * 299.99568 * 28 27 8 50 50 H 1.09002 * 109.47007 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1557 -2.4742 0.6112 7 6 5.6857 -2.4745 0.6112 8 6 6.1958 -2.3492 -0.8258 9 7 7.6608 -2.3488 -0.8257 10 6 8.3349 -2.7483 -1.9221 11 8 7.7287 -3.1086 -2.9089 12 6 9.8419 -2.7474 -1.9222 13 6 10.3445 -3.2345 -3.2568 14 6 10.6735 -4.5597 -3.4294 15 6 11.1355 -5.0106 -4.6560 16 6 11.2722 -4.1343 -5.7218 17 6 10.9503 -2.8049 -5.5719 18 6 10.4738 -2.3373 -4.3330 19 6 10.1329 -0.9748 -4.1692 20 1 9.4091 -0.6853 -3.4218 21 6 10.7335 -0.0015 -4.9758 22 7 11.8196 -0.2871 -5.6466 23 14 9.9840 1.7055 -5.0943 24 1 8.7679 1.7722 -4.2449 25 1 10.9700 2.7125 -4.6262 26 1 9.6190 1.9888 -6.5055 27 6 5.6859 -1.0421 -1.4359 28 6 4.1560 -1.0419 -1.4359 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 4.0090 -0.3251 0.5904 34 1 3.7926 -3.3162 0.0218 35 1 3.7920 -2.5636 1.6348 36 1 6.0489 -3.4059 1.0455 37 1 6.0491 -1.6325 1.2004 38 1 5.8324 -3.1913 -1.4149 39 1 8.1456 -2.0610 -0.0363 40 1 10.2057 -3.4072 -1.1345 41 1 10.2046 -1.7350 -1.7445 42 1 10.5705 -5.2512 -2.6061 43 1 11.3909 -6.0523 -4.7825 44 1 11.6335 -4.4963 -6.6730 45 1 11.0579 -2.1239 -6.4033 46 1 12.2357 0.3874 -6.2060 47 1 6.0494 -0.2001 -0.8467 48 1 6.0498 -0.9527 -2.4595 49 1 3.7926 -1.8838 -2.0251 50 1 3.7928 -0.1105 -1.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777381309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:29 Heat of formation + Delta-G solvation = -81.899291 kcal Electronic energy + Delta-G solvation = -30008.383779 eV Core-core repulsion = 25998.722969 eV Total energy + Delta-G solvation = -4009.660810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.32570 -39.39109 -38.04532 -37.09024 -34.85709 -33.57450 -32.94978 -31.64538 -30.98265 -30.35358 -29.40688 -28.10085 -26.40430 -24.91213 -23.00432 -22.49622 -20.89009 -20.76382 -20.35569 -20.20834 -19.16601 -17.22890 -17.09078 -16.72283 -16.28642 -16.01803 -15.52665 -15.35082 -14.78395 -14.45584 -14.27930 -14.22787 -13.93642 -13.63936 -13.34572 -13.15267 -13.08037 -12.90765 -12.71066 -12.54469 -12.44281 -12.33133 -11.81466 -11.61964 -11.51669 -11.49632 -11.30811 -11.12531 -10.98902 -10.93896 -10.64276 -10.57563 -10.53226 -10.34173 -10.10466 -9.44005 -9.32666 -9.29116 -9.12719 -9.07386 -8.64354 -7.26652 -7.24439 -6.69173 -4.29494 2.38528 2.81812 2.91293 3.02321 3.11544 3.17385 3.30640 3.39542 3.69006 3.98231 4.38636 4.51489 4.56100 4.70626 4.80576 4.89803 4.92637 5.04842 5.09304 5.24579 5.28261 5.32387 5.43155 5.50141 5.57206 5.61597 5.77444 5.83571 5.86754 5.94522 6.06258 6.11993 6.15638 6.22480 6.31907 6.34662 6.41163 6.48240 6.55158 6.84537 6.89533 7.13618 7.22681 7.34205 7.46922 7.69019 7.94059 7.96742 8.01732 8.13155 8.17571 8.36326 8.69933 8.93087 8.96856 9.06406 10.24963 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.002750 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.763469 B =10179.179697 C =11768.045054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.546 6.546 4 N -0.727 5.727 5 C 0.141 3.859 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.147 3.853 9 N -0.743 5.743 10 C 0.516 3.484 11 O -0.520 6.520 12 C -0.071 4.071 13 C -0.180 4.180 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.454 4.454 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.272 1.272 27 C -0.129 4.129 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.399 0.601 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.395 0.605 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.278 0.722 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 -2.179 14.130 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.423 6.423 4 N -0.379 5.379 5 C 0.037 3.963 6 C -0.159 4.159 7 C -0.160 4.160 8 C 0.042 3.958 9 N -0.396 5.396 10 C 0.303 3.697 11 O -0.394 6.394 12 C -0.111 4.111 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.260 4.260 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.126 3.874 19 C -0.484 4.484 20 H 0.093 0.907 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.725 3.275 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.197 1.197 27 C -0.168 4.168 28 C -0.163 4.163 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.228 0.772 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.569 -1.576 13.231 21.262 hybrid contribution -0.287 0.535 0.170 0.631 sum -16.856 -1.041 13.401 21.559 Atomic orbital electron populations 1.21855 0.91847 1.04113 1.05290 1.20828 0.90572 0.83636 0.75442 1.90750 1.70715 1.31397 1.49439 1.46236 1.07457 1.08649 1.75535 1.21087 0.78995 0.98934 0.97300 1.21723 0.95875 0.96987 1.01286 1.21736 0.94691 1.02919 0.96665 1.20847 0.80856 0.98452 0.95686 1.46198 1.06082 1.70081 1.17239 1.21223 0.90906 0.75616 0.81939 1.90673 1.70294 1.45688 1.32720 1.20272 0.89976 1.03134 0.97730 1.19063 1.11434 0.94137 0.93555 1.20288 0.99531 0.94240 0.95933 1.20298 1.13268 0.97516 0.94881 1.20672 1.00756 0.94463 0.96713 1.21299 1.04835 0.93725 0.98032 1.17345 0.87894 0.92341 0.89805 1.19497 1.21127 0.91041 1.16748 0.90741 1.25873 0.93488 1.00964 0.93718 1.69825 1.14312 1.35668 1.22354 0.86379 0.80252 0.81641 0.79198 1.18450 1.20040 1.19737 1.21906 0.94260 0.97753 1.02885 1.21854 0.95878 1.02672 0.95918 0.90648 0.88845 0.88753 0.76649 0.89325 0.91030 0.91015 0.90745 0.91121 0.89681 0.77193 0.90721 0.88634 0.89826 0.89723 0.89638 0.86551 0.91067 0.91691 0.90458 0.91572 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.39 36.00 0.37 -0.54 16 2 C 0.51 4.90 7.90 -10.99 -0.09 4.81 16 3 O -0.55 -8.01 16.76 5.55 0.09 -7.92 16 4 N -0.73 -5.60 5.08 -53.80 -0.27 -5.87 16 5 C 0.14 1.32 2.46 -67.93 -0.17 1.15 16 6 C -0.12 -0.88 5.39 -26.74 -0.14 -1.02 16 7 C -0.12 -1.04 5.39 -26.73 -0.14 -1.19 16 8 C 0.15 1.83 2.45 -67.93 -0.17 1.67 16 9 N -0.74 -10.42 5.08 -53.81 -0.27 -10.69 16 10 C 0.52 9.87 7.40 -10.99 -0.08 9.79 16 11 O -0.52 -12.29 15.70 5.56 0.09 -12.20 16 12 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 13 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 14 C -0.08 -1.90 9.66 -39.67 -0.38 -2.28 16 15 C -0.24 -5.67 10.05 -39.29 -0.39 -6.06 16 16 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 17 C -0.16 -4.33 8.69 -38.87 -0.34 -4.66 16 18 C 0.13 3.47 5.56 -106.82 -0.59 2.88 16 19 C -0.45 -12.08 8.14 -37.74 -0.31 -12.39 16 20 H 0.07 1.94 6.67 -52.49 -0.35 1.59 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.80 -20.84 10.96 55.55 0.61 -20.23 16 23 Si 0.90 19.33 29.59 -169.99 -5.03 14.30 16 24 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.13 -1.74 5.49 -26.73 -0.15 -1.89 16 28 C -0.12 -1.44 5.49 -26.73 -0.15 -1.59 16 29 H 0.07 0.20 7.91 -51.93 -0.41 -0.21 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 1.83 8.44 -40.82 -0.34 1.49 16 33 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 39 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 40 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 42 H 0.08 1.71 8.06 -52.48 -0.42 1.28 16 43 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 45 H 0.12 3.24 6.21 -52.48 -0.33 2.92 16 46 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -34.37 405.76 -10.48 -44.86 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.99 Total: 10.53 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -3.82 Total: -18.89 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.06 Total: -36.79 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.12 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.37 -10.48 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777381309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.044 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds