Wall clock time and date at job start Wed Apr 1 2020 03:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21289 * 119.99952 * 2 1 4 4 N 1.34776 * 120.00125 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99755 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47216 * 155.00045 * 5 4 2 7 7 C 1.52993 * 109.47419 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47461 * 300.00428 * 7 6 5 9 9 N 1.46501 * 109.47257 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00060 * 154.99939 * 9 8 7 11 11 O 1.21280 * 120.00400 * 359.97438 * 10 9 8 12 12 C 1.50708 * 119.99885 * 179.97438 * 10 9 8 13 13 C 1.50703 * 109.46845 * 179.97438 * 12 10 9 14 14 C 1.37630 * 120.13156 * 264.99818 * 13 12 10 15 15 C 1.38610 * 120.25206 * 179.97438 * 14 13 12 16 16 C 1.38654 * 120.50035 * 0.02562 * 15 14 13 17 17 C 1.37603 * 120.24959 * 0.02562 * 16 15 14 18 18 C 1.40704 * 120.12471 * 84.72663 * 13 12 10 19 19 C 1.41398 * 120.24312 * 359.97438 * 18 13 12 20 20 H 1.07999 * 120.00339 * 333.89897 * 19 18 13 21 21 C 1.39952 * 119.99779 * 153.90037 * 19 18 13 22 22 N 1.30817 * 119.99956 * 343.70601 * 21 19 18 23 23 Si 1.86797 * 119.99651 * 163.70694 * 21 19 18 24 24 H 1.48494 * 109.47474 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46963 * 120.00040 * 23 21 19 26 26 H 1.48500 * 109.46769 * 239.99693 * 23 21 19 27 27 C 1.52998 * 109.47154 * 59.99409 * 8 7 6 28 28 C 1.52995 * 109.47154 * 300.00353 * 27 8 7 29 29 H 1.09000 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47675 * 300.00213 * 1 2 3 31 31 H 1.08999 * 109.47437 * 60.00808 * 1 2 3 32 32 H 0.96994 * 120.00102 * 0.02562 * 4 2 1 33 33 H 1.09001 * 109.47353 * 34.99679 * 5 4 2 34 34 H 1.09004 * 109.46771 * 59.99708 * 6 5 4 35 35 H 1.09003 * 109.47018 * 300.00153 * 6 5 4 36 36 H 1.09002 * 109.47272 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46996 * 60.00325 * 7 6 5 38 38 H 1.09001 * 109.46580 * 299.99555 * 8 7 6 39 39 H 0.97008 * 119.99646 * 334.99695 * 9 8 7 40 40 H 1.08999 * 109.46840 * 59.99920 * 12 10 9 41 41 H 1.08997 * 109.46960 * 299.99356 * 12 10 9 42 42 H 1.08003 * 119.87679 * 0.02562 * 14 13 12 43 43 H 1.07999 * 119.75361 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.88163 * 179.97438 * 16 15 14 45 45 H 1.08004 * 120.12880 * 179.97438 * 17 16 15 46 46 H 0.97000 * 120.00500 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.46771 * 60.00428 * 27 8 7 48 48 H 1.09003 * 109.47018 * 179.97438 * 27 8 7 49 49 H 1.08994 * 109.47385 * 299.99568 * 28 27 8 50 50 H 1.09002 * 109.47007 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1557 -2.4742 0.6112 7 6 5.6857 -2.4745 0.6112 8 6 6.1958 -2.3492 -0.8258 9 7 7.6608 -2.3488 -0.8257 10 6 8.3349 -2.7483 -1.9221 11 8 7.7287 -3.1086 -2.9089 12 6 9.8419 -2.7474 -1.9222 13 6 10.3445 -3.2345 -3.2568 14 6 10.6735 -4.5597 -3.4294 15 6 11.1355 -5.0106 -4.6560 16 6 11.2722 -4.1343 -5.7218 17 6 10.9503 -2.8049 -5.5719 18 6 10.4738 -2.3373 -4.3330 19 6 10.1329 -0.9748 -4.1692 20 1 9.4091 -0.6853 -3.4218 21 6 10.7335 -0.0015 -4.9758 22 7 11.8196 -0.2871 -5.6466 23 14 9.9840 1.7055 -5.0943 24 1 8.7679 1.7722 -4.2449 25 1 10.9700 2.7125 -4.6262 26 1 9.6190 1.9888 -6.5055 27 6 5.6859 -1.0421 -1.4359 28 6 4.1560 -1.0419 -1.4359 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6959 -2.0072 0.0005 33 1 4.0090 -0.3251 0.5904 34 1 3.7926 -3.3162 0.0218 35 1 3.7920 -2.5636 1.6348 36 1 6.0489 -3.4059 1.0455 37 1 6.0491 -1.6325 1.2004 38 1 5.8324 -3.1913 -1.4149 39 1 8.1456 -2.0610 -0.0363 40 1 10.2057 -3.4072 -1.1345 41 1 10.2046 -1.7350 -1.7445 42 1 10.5705 -5.2512 -2.6061 43 1 11.3909 -6.0523 -4.7825 44 1 11.6335 -4.4963 -6.6730 45 1 11.0579 -2.1239 -6.4033 46 1 12.2357 0.3874 -6.2060 47 1 6.0494 -0.2001 -0.8467 48 1 6.0498 -0.9527 -2.4595 49 1 3.7926 -1.8838 -2.0251 50 1 3.7928 -0.1105 -1.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777381309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:28 Heat of formation + Delta-G solvation = -104.722533 kcal Electronic energy + Delta-G solvation = -30009.373469 eV Core-core repulsion = 25998.722969 eV Total energy + Delta-G solvation = -4010.650500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27819 -40.64512 -39.42567 -38.59399 -35.91562 -35.50583 -34.08718 -33.30518 -31.84639 -31.36307 -31.08268 -29.19712 -27.90679 -26.76962 -23.89192 -23.52374 -22.81510 -21.90504 -21.54493 -21.25049 -20.64584 -19.07694 -18.05590 -17.57217 -17.51503 -17.35647 -17.07269 -16.36696 -16.21499 -16.13596 -15.46676 -15.36015 -15.17901 -14.89568 -14.73944 -14.57464 -14.38136 -14.09379 -13.69881 -13.48954 -13.40061 -13.33278 -13.26058 -13.02552 -12.92568 -12.77356 -12.68414 -12.62226 -12.47385 -12.34862 -12.16895 -12.14200 -11.49045 -11.48686 -11.31560 -11.20466 -11.04475 -10.94929 -10.65784 -10.09980 -9.92021 -9.22160 -9.15267 -8.60938 -6.29701 0.98163 1.13611 1.32520 1.45018 1.49264 1.64979 1.88530 2.17016 2.23140 2.46376 2.77734 3.62667 3.67134 3.76767 3.95050 4.01475 4.10265 4.17564 4.19716 4.35431 4.38339 4.42739 4.43055 4.50623 4.54171 4.63548 4.66967 4.71727 4.73382 4.75705 4.82709 4.97951 5.05185 5.06927 5.10284 5.11963 5.12802 5.19972 5.30860 5.34543 5.37364 5.53314 5.55366 5.68440 5.78166 6.04358 6.17495 6.21931 6.42361 6.61465 6.71046 6.78304 6.99265 7.11700 7.30409 7.51630 8.35607 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.002750 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.763469 B =10179.179697 C =11768.045054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.500 3.500 3 O -0.605 6.605 4 N -0.713 5.713 5 C 0.146 3.854 6 C -0.111 4.111 7 C -0.112 4.112 8 C 0.148 3.852 9 N -0.722 5.722 10 C 0.517 3.483 11 O -0.574 6.574 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.091 4.091 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.195 4.195 18 C 0.095 3.905 19 C -0.479 4.479 20 H 0.068 0.932 21 C 0.037 3.963 22 N -0.826 5.826 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.259 1.259 26 H -0.269 1.269 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.418 0.582 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.413 0.587 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.285 0.715 47 H 0.065 0.935 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.288 -3.626 17.075 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.289 3.711 3 O -0.486 6.486 4 N -0.365 5.365 5 C 0.041 3.959 6 C -0.149 4.149 7 C -0.151 4.151 8 C 0.043 3.957 9 N -0.375 5.375 10 C 0.305 3.695 11 O -0.452 6.452 12 C -0.110 4.110 13 C -0.188 4.188 14 C -0.109 4.109 15 C -0.261 4.261 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.092 3.908 19 C -0.509 4.509 20 H 0.086 0.914 21 C -0.177 4.177 22 N -0.453 5.453 23 Si 0.788 3.212 24 H -0.191 1.191 25 H -0.183 1.183 26 H -0.194 1.194 27 C -0.164 4.164 28 C -0.156 4.156 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.250 0.750 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.049 0.951 49 H 0.087 0.913 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.124 -3.059 16.233 24.522 hybrid contribution 0.200 0.882 -0.742 1.170 sum -17.924 -2.177 15.491 23.790 Atomic orbital electron populations 1.21872 0.88233 1.06479 1.05701 1.21669 0.92365 0.83023 0.74026 1.90726 1.72195 1.33512 1.52213 1.46126 1.06803 1.09273 1.74308 1.20922 0.80103 0.99815 0.95069 1.21696 0.94714 0.95650 1.02848 1.21709 0.95576 1.04447 0.93325 1.20960 0.79560 0.96770 0.98417 1.45984 1.06994 1.68080 1.16427 1.21098 0.90790 0.75320 0.82271 1.90656 1.71121 1.48542 1.34851 1.20296 0.90417 1.03796 0.96541 1.19573 1.09972 0.94405 0.94818 1.20741 0.98644 0.94487 0.97030 1.20734 1.11964 0.98834 0.94541 1.20948 1.00551 0.93867 0.98269 1.21306 1.07441 0.94719 0.97964 1.17741 0.88901 0.93350 0.90771 1.19600 1.21808 0.91695 1.17838 0.91353 1.26597 0.93563 1.04380 0.93144 1.69877 1.15247 1.37105 1.23024 0.85400 0.79287 0.77495 0.79020 1.19130 1.18308 1.19384 1.21820 0.95740 0.98698 1.00183 1.21761 0.94426 1.01456 0.97963 0.87325 0.87983 0.88660 0.74394 0.91102 0.89867 0.88241 0.88765 0.89978 0.91470 0.74990 0.86743 0.88814 0.86335 0.86585 0.87727 0.88658 0.90403 0.91624 0.95070 0.91291 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 10.39 71.23 0.74 -0.62 16 2 C 0.50 9.10 7.90 87.65 0.69 9.80 16 3 O -0.60 -18.09 16.76 -3.06 -0.05 -18.15 16 4 N -0.71 -9.56 5.08 -442.53 -2.25 -11.80 16 5 C 0.15 2.53 2.46 44.99 0.11 2.64 16 6 C -0.11 -1.24 5.39 30.59 0.16 -1.07 16 7 C -0.11 -1.57 5.39 30.59 0.16 -1.40 16 8 C 0.15 3.56 2.45 44.99 0.11 3.67 16 9 N -0.72 -19.43 5.08 -442.54 -2.25 -21.67 16 10 C 0.52 19.73 7.40 87.66 0.65 20.38 16 11 O -0.57 -27.85 15.70 -3.03 -0.05 -27.89 16 12 C -0.07 -2.71 5.18 29.11 0.15 -2.56 16 13 C -0.19 -9.03 4.43 -19.40 -0.09 -9.12 16 14 C -0.09 -4.11 9.66 22.21 0.21 -3.89 16 15 C -0.24 -11.09 10.05 22.46 0.23 -10.87 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.19 -11.01 8.69 22.73 0.20 -10.82 16 18 C 0.09 5.29 5.56 -21.29 -0.12 5.18 16 19 C -0.48 -26.62 8.14 23.46 0.19 -26.43 16 20 H 0.07 3.74 6.67 -2.91 -0.02 3.72 16 21 C 0.04 1.98 5.16 85.26 0.44 2.42 16 22 N -0.83 -44.93 10.96 21.83 0.24 -44.69 16 23 Si 0.97 41.04 29.59 68.60 2.03 43.07 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 C -0.12 -3.51 5.49 30.59 0.17 -3.34 16 28 C -0.12 -2.78 5.49 30.59 0.17 -2.61 16 29 H 0.11 0.16 7.91 -2.39 -0.02 0.15 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.42 2.45 8.44 -92.71 -0.78 1.67 16 33 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 39 H 0.41 8.08 8.60 -92.70 -0.80 7.28 16 40 H 0.11 3.38 8.05 -2.39 -0.02 3.36 16 41 H 0.09 3.61 7.08 -2.39 -0.02 3.59 16 42 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 43 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.10 5.65 6.21 -2.91 -0.02 5.63 16 46 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 47 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -81.35 405.76 1.46 -79.88 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.62 Total: 35.61 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 4.41 Total: -34.35 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -4.25 Total: -78.17 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -0.10 Total: -46.04 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -81.35 1.46 -79.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777381309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.839 kcal (2) G-P(sol) polarization free energy of solvation -81.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds